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The map label for this gene is ompA [H]

Identifier: 39996844

GI number: 39996844

Start: 1909766

End: 1911340

Strand: Reverse

Name: ompA [H]

Synonym: GSU1745

Alternate gene names: 39996844

Gene position: 1911340-1909766 (Counterclockwise)

Preceding gene: 39996845

Following gene: 39996843

Centisome position: 50.11

GC content: 58.73

Gene sequence:

>1575_bases
ATGCAGAGACTTCGGGTAATTCTTACAATCTTCCTCTCGCTGCTCGCCTCGGAGGTTTTTGCTAATCCGTCCACCAGCGG
CGAGACGGGACTCATCACGGTCCCGTCGGCCGAAACCCTCGACGCGGGCAACATCTGCGTCGGTCTGTGGGGGATAGGCA
CCGGTACGCAGGCGGATAACGCCCTGACCCTCCCCGCGTCGCTCACGCTCGGCATAGGCTCGTTCTGGGAAATATACGGC
AACTATCCGAACCTGCTGTTCAACGGCGATGAGGACAAGACCGATCGGGGCTACGCCGAAATAGGAACCAAACTTCGCTT
TCTCGGCAAGAGAAGCTCCCCCCTGAAGGCTGCAGTCGATCTCTTCGTACAGCGGCAGATCTCCGAAGACCCCGACGTGG
ATGGAACAACCCACGGCGGCGGCCGACTCATCACCTCCTATTCCTCCGAACAACTCGGCGTGCACGGCAATCTGGGCTAC
CTCTTCGCTGGCTCTTATGCCAACAGGTCGGTTGATGATGAAATCCTCTACGGTTTCGGCATCGACTATACGCCCGCAAC
CCGCCTGAGGCTTACGGCAGAGTTGACGGGAAGCACCGGACGCTTCGCAGATCAAGACGCTCCCCTGGAGGGGCTCCTCG
GATTCCAGTACTACATCTCGCCGCATCTCACCCTCAATCTTGCCGGCGGGCTCGGTCTTTCCGATGCCAGCCCCGACTGG
CGCGCCGTGGCCGGGCTCACGGCATGTCAAGGCGTCGGTACCTACATCAAGCCGGTCCCTCGACTGGGAGGCGGTGATTT
CGAGGAAGAAAAGCAAAAGAAGCAAGAACCAGTGAAGATCAGAAAGATCATTCCGATTTCCCCCCTCCTGATCAGCTCCC
TTTCCCAGCCTGCTCCGGTCAGCAAGCTTGAGGTCCCCCTTGGTCAGGACAAGGAAGATGTTGTTATCAAGCCGTACGGG
AAGGTGACTCTTGCCGCCCAGGCCGCCAATGCGCCCGTTGCGGTGGCTGCCGCATCCGAAGAGGTTGCACTGGGGCAGGG
GGGAGAAGAGGTGCGCCTGGCCACCCGGTCCGTGGACGGGTACGAGAATGTGGCCCTTGAATACACGCTGAGCAGACTGG
AAGGCGTTACCCCGCTGTACAGTGTCGACGTCAAGGGACAGAATTTCCAGGTGGCATCAGCCGTGCACGAGAATATTCCG
GAAGCAATGACCGTCTACCGCAAGTTCCGCTTTCCGGACGTATCCTTCGATTTCGATCAGTGGAGCCTTTCCGCCGAAGG
GAAAAAGGCCCTTTCCGAGGTTGCCGAGCAGATTCGCAGGGACAAACGGTGGGTTTATCTCCGAATCGACGGGCATGCGG
ACAACATCGGCTCGGTCGGCTACAACATGGATTTATCGCTCAAACGTGCCATTTCAGTGGCCAGCTATCTCATTGCCCGC
GAAGGGATCGACCCGTCCCGCCTCTTTGTCAAGGGGCTCGGCAAGTCAAAGCCCATTGGCGACAACAAGACTGCCGAAGG
GAGAAAACTCAATCGCCGGGGCGAGATACTGTTTCTGATCCCCAAGGACGAGTAA

Upstream 100 bases:

>100_bases
GCTGAAGGAGCGCGTTGACGGCAAGTGATTGCAGCTTCTCCTTTTTGGCGAGCAGGTGATCATAACCTCTACTGGTCAGC
GTTCCGGATGACACCTCTTA

Downstream 100 bases:

>100_bases
ATCCATGAGACGACTCATACCTGCATGTTTGGTTATAGCCCTCGGTGTGCTCACCGGCGCCCCCGCTTTTGCGGCTGAGA
AGCAGCCGAGAGAAGAGGTC

Product: OmpA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 524; Mature: 524

Protein sequence:

>524_residues
MQRLRVILTIFLSLLASEVFANPSTSGETGLITVPSAETLDAGNICVGLWGIGTGTQADNALTLPASLTLGIGSFWEIYG
NYPNLLFNGDEDKTDRGYAEIGTKLRFLGKRSSPLKAAVDLFVQRQISEDPDVDGTTHGGGRLITSYSSEQLGVHGNLGY
LFAGSYANRSVDDEILYGFGIDYTPATRLRLTAELTGSTGRFADQDAPLEGLLGFQYYISPHLTLNLAGGLGLSDASPDW
RAVAGLTACQGVGTYIKPVPRLGGGDFEEEKQKKQEPVKIRKIIPISPLLISSLSQPAPVSKLEVPLGQDKEDVVIKPYG
KVTLAAQAANAPVAVAAASEEVALGQGGEEVRLATRSVDGYENVALEYTLSRLEGVTPLYSVDVKGQNFQVASAVHENIP
EAMTVYRKFRFPDVSFDFDQWSLSAEGKKALSEVAEQIRRDKRWVYLRIDGHADNIGSVGYNMDLSLKRAISVASYLIAR
EGIDPSRLFVKGLGKSKPIGDNKTAEGRKLNRRGEILFLIPKDE

Sequences:

>Translated_524_residues
MQRLRVILTIFLSLLASEVFANPSTSGETGLITVPSAETLDAGNICVGLWGIGTGTQADNALTLPASLTLGIGSFWEIYG
NYPNLLFNGDEDKTDRGYAEIGTKLRFLGKRSSPLKAAVDLFVQRQISEDPDVDGTTHGGGRLITSYSSEQLGVHGNLGY
LFAGSYANRSVDDEILYGFGIDYTPATRLRLTAELTGSTGRFADQDAPLEGLLGFQYYISPHLTLNLAGGLGLSDASPDW
RAVAGLTACQGVGTYIKPVPRLGGGDFEEEKQKKQEPVKIRKIIPISPLLISSLSQPAPVSKLEVPLGQDKEDVVIKPYG
KVTLAAQAANAPVAVAAASEEVALGQGGEEVRLATRSVDGYENVALEYTLSRLEGVTPLYSVDVKGQNFQVASAVHENIP
EAMTVYRKFRFPDVSFDFDQWSLSAEGKKALSEVAEQIRRDKRWVYLRIDGHADNIGSVGYNMDLSLKRAISVASYLIAR
EGIDPSRLFVKGLGKSKPIGDNKTAEGRKLNRRGEILFLIPKDE
>Mature_524_residues
MQRLRVILTIFLSLLASEVFANPSTSGETGLITVPSAETLDAGNICVGLWGIGTGTQADNALTLPASLTLGIGSFWEIYG
NYPNLLFNGDEDKTDRGYAEIGTKLRFLGKRSSPLKAAVDLFVQRQISEDPDVDGTTHGGGRLITSYSSEQLGVHGNLGY
LFAGSYANRSVDDEILYGFGIDYTPATRLRLTAELTGSTGRFADQDAPLEGLLGFQYYISPHLTLNLAGGLGLSDASPDW
RAVAGLTACQGVGTYIKPVPRLGGGDFEEEKQKKQEPVKIRKIIPISPLLISSLSQPAPVSKLEVPLGQDKEDVVIKPYG
KVTLAAQAANAPVAVAAASEEVALGQGGEEVRLATRSVDGYENVALEYTLSRLEGVTPLYSVDVKGQNFQVASAVHENIP
EAMTVYRKFRFPDVSFDFDQWSLSAEGKKALSEVAEQIRRDKRWVYLRIDGHADNIGSVGYNMDLSLKRAISVASYLIAR
EGIDPSRLFVKGLGKSKPIGDNKTAEGRKLNRRGEILFLIPKDE

Specific function: Structural protein that may protect the integrity of the bacterium [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=106, Percent_Identity=39.622641509434, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1788957, Length=136, Percent_Identity=35.2941176470588, Blast_Score=68, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 56650; Mature: 56650

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRLRVILTIFLSLLASEVFANPSTSGETGLITVPSAETLDAGNICVGLWGIGTGTQADN
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCC
ALTLPASLTLGIGSFWEIYGNYPNLLFNGDEDKTDRGYAEIGTKLRFLGKRSSPLKAAVD
EEECCCEEEECCCHHHHHHCCCCCEEECCCCCCCCCCHHHHCCHHEECCCCCCCHHHHHH
LFVQRQISEDPDVDGTTHGGGRLITSYSSEQLGVHGNLGYLFAGSYANRSVDDEILYGFG
HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECC
IDYTPATRLRLTAELTGSTGRFADQDAPLEGLLGFQYYISPHLTLNLAGGLGLSDASPDW
CCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHCCEEEEECCEEEEEEECCCCCCCCCCCH
RAVAGLTACQGVGTYIKPVPRLGGGDFEEEKQKKQEPVKIRKIIPISPLLISSLSQPAPV
HHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCC
SKLEVPLGQDKEDVVIKPYGKVTLAAQAANAPVAVAAASEEVALGQGGEEVRLATRSVDG
CEEECCCCCCCCCEEEECCCCEEEEEECCCCCEEEEECCCCEECCCCCCEEEEEEECCCC
YENVALEYTLSRLEGVTPLYSVDVKGQNFQVASAVHENIPEAMTVYRKFRFPDVSFDFDQ
CHHEEHEEEHHHHCCCCCEEEEECCCCCEEHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
WSLSAEGKKALSEVAEQIRRDKRWVYLRIDGHADNIGSVGYNMDLSLKRAISVASYLIAR
EECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
EGIDPSRLFVKGLGKSKPIGDNKTAEGRKLNRRGEILFLIPKDE
CCCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEEEEECCC
>Mature Secondary Structure
MQRLRVILTIFLSLLASEVFANPSTSGETGLITVPSAETLDAGNICVGLWGIGTGTQADN
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCCCCCCCC
ALTLPASLTLGIGSFWEIYGNYPNLLFNGDEDKTDRGYAEIGTKLRFLGKRSSPLKAAVD
EEECCCEEEECCCHHHHHHCCCCCEEECCCCCCCCCCHHHHCCHHEECCCCCCCHHHHHH
LFVQRQISEDPDVDGTTHGGGRLITSYSSEQLGVHGNLGYLFAGSYANRSVDDEILYGFG
HHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCEEEECC
IDYTPATRLRLTAELTGSTGRFADQDAPLEGLLGFQYYISPHLTLNLAGGLGLSDASPDW
CCCCCCCEEEEEEEECCCCCCCCCCCCCHHHHCCEEEEECCEEEEEEECCCCCCCCCCCH
RAVAGLTACQGVGTYIKPVPRLGGGDFEEEKQKKQEPVKIRKIIPISPLLISSLSQPAPV
HHHHHHHHHHCCCHHHCCCCCCCCCCCHHHHHHHCCCEEEEEECCCCHHHHHHCCCCCCC
SKLEVPLGQDKEDVVIKPYGKVTLAAQAANAPVAVAAASEEVALGQGGEEVRLATRSVDG
CEEECCCCCCCCCEEEECCCCEEEEEECCCCCEEEEECCCCEECCCCCCEEEEEEECCCC
YENVALEYTLSRLEGVTPLYSVDVKGQNFQVASAVHENIPEAMTVYRKFRFPDVSFDFDQ
CHHEEHEEEHHHHCCCCCEEEEECCCCCEEHHHHHHHCCHHHHHHHHHHCCCCCCCCCCC
WSLSAEGKKALSEVAEQIRRDKRWVYLRIDGHADNIGSVGYNMDLSLKRAISVASYLIAR
EECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
EGIDPSRLFVKGLGKSKPIGDNKTAEGRKLNRRGEILFLIPKDE
CCCCHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1447140 [H]