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The map label for this gene is rbfA

Identifier: 39996689

GI number: 39996689

Start: 1743169

End: 1743525

Strand: Direct

Name: rbfA

Synonym: GSU1589

Alternate gene names: 39996689

Gene position: 1743169-1743525 (Clockwise)

Preceding gene: 39996688

Following gene: 39996690

Centisome position: 45.7

GC content: 53.78

Gene sequence:

>357_bases
ATGTTCAACCGTTCTGAAAAAGTAGCCGAGGCGATCCATGAGCTCGTGTCGGGGCTTATCGTCAAGGGGATGAAGGATCC
GCGCATCGGGTTCATCACCATTACCGGCGTAAAAGTTACCGATGACATACGCCAGGCGACCATCTATTACACGGTCATGG
GTGATGACGAAGCCAGGGTCTCGACGGCGCGCGGGCTTGCAAGTGCAACCGGCTTCCTGCGCCGGGAGATCGGAAAGCAG
CTCAGGCTCAAATTCGCACCGGAGCTTCACTTCAAATACGACCAGTCAATTGAGTACGGCAACCGGATCGATCAACTGCT
GAAAGAAATCGAGACTGAGAAAGGTTCCGATGATTGA

Upstream 100 bases:

>100_bases
TTCGAGATCGAGAAGATCGCCACCACCCTGTAGAAAGGGAACAAGTATGCGCACGACGGTTCCGTAGTCCGTTGACCGCC
GTGCGCTCCGGGCCGTGCCT

Downstream 100 bases:

>100_bases
AAGCATTCTTCGTGAAATTCGGATTCACCGTAGTTTTTTGATCACCACTCACGAGAATCCTGACGGCGATGCGGTCGGGT
CGTCCCTTGCCCTTGCAGGT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 118; Mature: 118

Protein sequence:

>118_residues
MFNRSEKVAEAIHELVSGLIVKGMKDPRIGFITITGVKVTDDIRQATIYYTVMGDDEARVSTARGLASATGFLRREIGKQ
LRLKFAPELHFKYDQSIEYGNRIDQLLKEIETEKGSDD

Sequences:

>Translated_118_residues
MFNRSEKVAEAIHELVSGLIVKGMKDPRIGFITITGVKVTDDIRQATIYYTVMGDDEARVSTARGLASATGFLRREIGKQ
LRLKFAPELHFKYDQSIEYGNRIDQLLKEIETEKGSDD
>Mature_118_residues
MFNRSEKVAEAIHELVSGLIVKGMKDPRIGFITITGVKVTDDIRQATIYYTVMGDDEARVSTARGLASATGFLRREIGKQ
LRLKFAPELHFKYDQSIEYGNRIDQLLKEIETEKGSDD

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=112, Percent_Identity=34.8214285714286, Blast_Score=76, Evalue=5e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_GEOSL (Q74CT2)

Other databases:

- EMBL:   AE017180
- RefSeq:   NP_952640.1
- ProteinModelPortal:   Q74CT2
- SMR:   Q74CT2
- GeneID:   2687364
- GenomeReviews:   AE017180_GR
- KEGG:   gsu:GSU1589
- NMPDR:   fig|243231.1.peg.1578
- TIGR:   GSU1589
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- ProtClustDB:   PRK13815
- BioCyc:   GSUL243231:GSU_1589-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13323; Mature: 13323

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNRSEKVAEAIHELVSGLIVKGMKDPRIGFITITGVKVTDDIRQATIYYTVMGDDEARV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEECCCCCEEEEEEEEECCCCHHH
STARGLASATGFLRREIGKQLRLKFAPELHFKYDQSIEYGNRIDQLLKEIETEKGSDD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MFNRSEKVAEAIHELVSGLIVKGMKDPRIGFITITGVKVTDDIRQATIYYTVMGDDEARV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECEEECCCCCEEEEEEEEECCCCHHH
STARGLASATGFLRREIGKQLRLKFAPELHFKYDQSIEYGNRIDQLLKEIETEKGSDD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA