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The map label for this gene is ydaM [H]

Identifier: 39996654

GI number: 39996654

Start: 1705571

End: 1706740

Strand: Direct

Name: ydaM [H]

Synonym: GSU1554

Alternate gene names: 39996654

Gene position: 1705571-1706740 (Clockwise)

Preceding gene: 39996653

Following gene: 39996657

Centisome position: 44.72

GC content: 63.85

Gene sequence:

>1170_bases
ATGCCGCGAAAGAAGAAAACCGTCGAAGACCCCGCGCTGACCCGTGCCTTGAAGGTCATGGAGGCGGGCGCGTTGCCGGA
TGCTGACCTGGCCGCCGAATTCGCCACCCTGGCCGAGAGTTACGGGAAGCTGCTGCGCAAATTCAACAAGACGCTCGTGA
TCAGCGATGCCTACGAGGCCCAGCATCAGGCAATGGCCAAGAAGCTGGAGGAGGCCACCTGGAAGTATCGTCAGTTGAAG
GATGTGGCGCTCCCGATCTGCATGTACTGCAAGAAGATCCGCTCCGACGACGACTACTGGCAGCGGCTGGAAACGTTTTT
CTGCAACCATGCCGATATCATGTTCAGTCACGGGATCTGCCCGGACTGCATCAAGACCGCCTATGAGAAGATGGGGATGA
ACAGGAGGGCCATGCCGCTGCCGGATGCTGCCGTGACCGGACAGCCGGCGGCGTCTCCCGAGCGGCAGCCGGTGGAGGAC
GACGCCCTCAGGGAGATGCGGGCGCTGGTGCGCCGGAGTGCCTTTGACGGGAGTCCGGTTGCGCCCGAGGTGGAACAGTT
CGTCGAAAAGTACGGCAAGCTGCTGCGCCGCTTCAGCAAGATCGTCTCCATCAGCGACAGCTACCAGTCACAGCTCCGGG
AGCTCAACGCCCGGCTGGAGCTGATGGCCCGCACCGATCTTCTCACCGGTCTCGCCAACCACTGGGAGATGGTGATGCGA
CTGGCAGCGGAGCAGAGTCGTTCGGAGCGAAACGGGAAGGTCTTTTCGATCGTGCTGGCGGATATCGATCACTTCAAGAA
GGTCAACGACACCCACGGGCACCAGGCCGGCGACCGGGTCATCCGGGGGATCGCCGACACCCTGCGTACCAATATCCGCC
GCGAAGACATCTGCAGCCGGTGGGGAGGGGAGGAGTTCCTCATCATACTGCCGGAGGCGGATTTGCCGCGGGCCGGGGCC
GTGGCGGCGAAGCTCCTCGCCAAGGTGCGGAATACGGTGGTCCCGTGGGATGGGCGCGACATCCGGGTCACCGTGAGCAT
CGGCTATGGCACCAGCGAACCCGGCATGAGCGTCGATGAACTGATCAGGCGAGTCGACGATGCCCTCTACAGCGCCAAGG
CCGCGGGCCGCGACCGGTTCGCCGCGGCCGGTTCCCGCGCCGACGTCTGA

Upstream 100 bases:

>100_bases
TACGACAGGGAGAATCCCCGGTCCCTTGATCTTGCAGAGGAGTTCAAGGAAGAGGTCACCCTGCCGTTTGCCATCGTGGA
ACTGGAAGAATGAGGTGGGT

Downstream 100 bases:

>100_bases
GCATGTCCCCTGCGGAGGCGCCGGTCCCGGCCCTCCGCATCACCCCTGCAGCGCCTCCCTGATTTTTCCATCCAGTGTTG
TAATGGTGAATGGCTTCTGC

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MPRKKKTVEDPALTRALKVMEAGALPDADLAAEFATLAESYGKLLRKFNKTLVISDAYEAQHQAMAKKLEEATWKYRQLK
DVALPICMYCKKIRSDDDYWQRLETFFCNHADIMFSHGICPDCIKTAYEKMGMNRRAMPLPDAAVTGQPAASPERQPVED
DALREMRALVRRSAFDGSPVAPEVEQFVEKYGKLLRRFSKIVSISDSYQSQLRELNARLELMARTDLLTGLANHWEMVMR
LAAEQSRSERNGKVFSIVLADIDHFKKVNDTHGHQAGDRVIRGIADTLRTNIRREDICSRWGGEEFLIILPEADLPRAGA
VAAKLLAKVRNTVVPWDGRDIRVTVSIGYGTSEPGMSVDELIRRVDDALYSAKAAGRDRFAAAGSRADV

Sequences:

>Translated_389_residues
MPRKKKTVEDPALTRALKVMEAGALPDADLAAEFATLAESYGKLLRKFNKTLVISDAYEAQHQAMAKKLEEATWKYRQLK
DVALPICMYCKKIRSDDDYWQRLETFFCNHADIMFSHGICPDCIKTAYEKMGMNRRAMPLPDAAVTGQPAASPERQPVED
DALREMRALVRRSAFDGSPVAPEVEQFVEKYGKLLRRFSKIVSISDSYQSQLRELNARLELMARTDLLTGLANHWEMVMR
LAAEQSRSERNGKVFSIVLADIDHFKKVNDTHGHQAGDRVIRGIADTLRTNIRREDICSRWGGEEFLIILPEADLPRAGA
VAAKLLAKVRNTVVPWDGRDIRVTVSIGYGTSEPGMSVDELIRRVDDALYSAKAAGRDRFAAAGSRADV
>Mature_388_residues
PRKKKTVEDPALTRALKVMEAGALPDADLAAEFATLAESYGKLLRKFNKTLVISDAYEAQHQAMAKKLEEATWKYRQLKD
VALPICMYCKKIRSDDDYWQRLETFFCNHADIMFSHGICPDCIKTAYEKMGMNRRAMPLPDAAVTGQPAASPERQPVEDD
ALREMRALVRRSAFDGSPVAPEVEQFVEKYGKLLRRFSKIVSISDSYQSQLRELNARLELMARTDLLTGLANHWEMVMRL
AAEQSRSERNGKVFSIVLADIDHFKKVNDTHGHQAGDRVIRGIADTLRTNIRREDICSRWGGEEFLIILPEADLPRAGAV
AAKLLAKVRNTVVPWDGRDIRVTVSIGYGTSEPGMSVDELIRRVDDALYSAKAAGRDRFAAAGSRADV

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=177, Percent_Identity=38.9830508474576, Blast_Score=116, Evalue=3e-27,
Organism=Escherichia coli, GI1786584, Length=183, Percent_Identity=34.9726775956284, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87082007, Length=177, Percent_Identity=35.0282485875706, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI145693134, Length=155, Percent_Identity=34.1935483870968, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=35.4037267080745, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788381, Length=185, Percent_Identity=31.8918918918919, Blast_Score=88, Evalue=1e-18,
Organism=Escherichia coli, GI1787541, Length=171, Percent_Identity=32.7485380116959, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=33.9393939393939, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1787802, Length=146, Percent_Identity=30.8219178082192, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=192, Percent_Identity=28.6458333333333, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=141, Percent_Identity=30.4964539007092, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788085, Length=185, Percent_Identity=28.1081081081081, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87081974, Length=89, Percent_Identity=34.8314606741573, Blast_Score=62, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 43663; Mature: 43531

Theoretical pI: Translated: 8.55; Mature: 8.55

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRKKKTVEDPALTRALKVMEAGALPDADLAAEFATLAESYGKLLRKFNKTLVISDAYEA
CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
QHQAMAKKLEEATWKYRQLKDVALPICMYCKKIRSDDDYWQRLETFFCNHADIMFSHGIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHCCCCC
PDCIKTAYEKMGMNRRAMPLPDAAVTGQPAASPERQPVEDDALREMRALVRRSAFDGSPV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
APEVEQFVEKYGKLLRRFSKIVSISDSYQSQLRELNARLELMARTDLLTGLANHWEMVMR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAEQSRSERNGKVFSIVLADIDHFKKVNDTHGHQAGDRVIRGIADTLRTNIRREDICSR
HHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
WGGEEFLIILPEADLPRAGAVAAKLLAKVRNTVVPWDGRDIRVTVSIGYGTSEPGMSVDE
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHH
LIRRVDDALYSAKAAGRDRFAAAGSRADV
HHHHHHHHHHHHHHCCCHHHHHCCCCCCC
>Mature Secondary Structure 
PRKKKTVEDPALTRALKVMEAGALPDADLAAEFATLAESYGKLLRKFNKTLVISDAYEA
CCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHH
QHQAMAKKLEEATWKYRQLKDVALPICMYCKKIRSDDDYWQRLETFFCNHADIMFSHGIC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHCCCCC
PDCIKTAYEKMGMNRRAMPLPDAAVTGQPAASPERQPVEDDALREMRALVRRSAFDGSPV
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
APEVEQFVEKYGKLLRRFSKIVSISDSYQSQLRELNARLELMARTDLLTGLANHWEMVMR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LAAEQSRSERNGKVFSIVLADIDHFKKVNDTHGHQAGDRVIRGIADTLRTNIRREDICSR
HHHHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHH
WGGEEFLIILPEADLPRAGAVAAKLLAKVRNTVVPWDGRDIRVTVSIGYGTSEPGMSVDE
CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCHHH
LIRRVDDALYSAKAAGRDRFAAAGSRADV
HHHHHHHHHHHHHHCCCHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]