| Definition | Geobacter sulfurreducens PCA chromosome, complete genome. |
|---|---|
| Accession | NC_002939 |
| Length | 3,814,139 |
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The map label for this gene is wxcX [H]
Identifier: 39996608
GI number: 39996608
Start: 1653235
End: 1654380
Strand: Direct
Name: wxcX [H]
Synonym: GSU1508
Alternate gene names: 39996608
Gene position: 1653235-1654380 (Clockwise)
Preceding gene: 39996607
Following gene: 39996609
Centisome position: 43.34
GC content: 39.09
Gene sequence:
>1146_bases ATGATCTCTGTGGGGAAAGGGAAAATCATGATTACTCCCGACCACAATATTATCAAACCTATCGCTATCGTATTACCCCA GTTCCATCCCATTCGAGAAAACAATTTATGGTGGGGCGAAGGTTTCACCGAATGGACTAATGTCGTTAAGGGGCGACCGC GTTTCCGGGGACATTACCAGCCTCATTTGCCGAAAGATCTTGGCTACTATGACTTGCGACTACCTGAAACACGCAAAGCG CAAGCTGCTCTCGCAACAAAATACGGCATCTATGGTTTTTGCTATTATCATTACTGGTTTAATGGTCGCCGTATTCTCGA AAGTCCTGTTGACGCAATGTTAGAATCAGGCGAGCCAGATTTCCCCTTCATGCTTTGCTGGGCAAATGAAAATTGGACGA GAAATTGGGATGGAAGTTATAATAAGGTTCTGTTGGAACAAAAGTATTCTAAGGAAGACTTTGTTAATCATGCACGCCAT TTGATAAGATACTTTAAGGATGACCGCTACATAAAAATTGATGGTAGACCTGTTTTTGCAATCTATAAGGATGACATAGG AGAAGATATTGAGAAATATCTTCTCCTATTTCGCAATGAATTGCTTAAAAATTCTATCAACGTATTTTTGTGCAGATTCG AAAGAAATATCGGGACAAGTAGGGACTTAAATAGAGCTTTTCAAGTTTTTGATGCAGGTATCGAATTTCAGCCTCTTGCT AGGCAATTTTCTTATTTGATCAATTATAATAATAGATTAAGTAGACGCATTTACAAGACGTTAAAAAAGCACTTCTGCTT CTGTAAGAATATTGATGATGTATATGTATATTCACATTTGGTAGATAATGACCTTAAATATGATTTTCAGCAAGGATGGC CAATTTTTCCAGGAGTATGTCCTGGATGGGATAACTCTGCTCGTCGCAGAGATACTACAGCGATAATATTCGATAAATCA ACTCCTGAAATCTTTAAACTATGGGTTCGTGAGAAAATTAGAATAACAGATTGGAATTTGCTTCCAGAAAGATTTCTTTT TGTAAACGCTTGGAATGAGTGGGCTGAGGGTAACCATCTTGAACCTTGCGAAAAGTGGGGTACACAGTATCTGGCTGCTC TTCAGGCGGGCATCAATGAAATGTGA
Upstream 100 bases:
>100_bases TACTCTCTCTGCCACCTTATCGGCTGTGGCTTCTAACAACAAAAGCAGGGCTAATGCATAGATTGCATTCTATTTTCACA GCATCACCCCGTGCTCGAAA
Downstream 100 bases:
>100_bases GTCTATTATGCGACCTAAAGTATCTGTTGCATTAGCAACGTATAATGGTGAGAAGTATATTGAAGAGCAGCTTGAGAGTA TTATTAAACAAACTAGGGCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 381; Mature: 381
Protein sequence:
>381_residues MISVGKGKIMITPDHNIIKPIAIVLPQFHPIRENNLWWGEGFTEWTNVVKGRPRFRGHYQPHLPKDLGYYDLRLPETRKA QAALATKYGIYGFCYYHYWFNGRRILESPVDAMLESGEPDFPFMLCWANENWTRNWDGSYNKVLLEQKYSKEDFVNHARH LIRYFKDDRYIKIDGRPVFAIYKDDIGEDIEKYLLLFRNELLKNSINVFLCRFERNIGTSRDLNRAFQVFDAGIEFQPLA RQFSYLINYNNRLSRRIYKTLKKHFCFCKNIDDVYVYSHLVDNDLKYDFQQGWPIFPGVCPGWDNSARRRDTTAIIFDKS TPEIFKLWVREKIRITDWNLLPERFLFVNAWNEWAEGNHLEPCEKWGTQYLAALQAGINEM
Sequences:
>Translated_381_residues MISVGKGKIMITPDHNIIKPIAIVLPQFHPIRENNLWWGEGFTEWTNVVKGRPRFRGHYQPHLPKDLGYYDLRLPETRKA QAALATKYGIYGFCYYHYWFNGRRILESPVDAMLESGEPDFPFMLCWANENWTRNWDGSYNKVLLEQKYSKEDFVNHARH LIRYFKDDRYIKIDGRPVFAIYKDDIGEDIEKYLLLFRNELLKNSINVFLCRFERNIGTSRDLNRAFQVFDAGIEFQPLA RQFSYLINYNNRLSRRIYKTLKKHFCFCKNIDDVYVYSHLVDNDLKYDFQQGWPIFPGVCPGWDNSARRRDTTAIIFDKS TPEIFKLWVREKIRITDWNLLPERFLFVNAWNEWAEGNHLEPCEKWGTQYLAALQAGINEM >Mature_381_residues MISVGKGKIMITPDHNIIKPIAIVLPQFHPIRENNLWWGEGFTEWTNVVKGRPRFRGHYQPHLPKDLGYYDLRLPETRKA QAALATKYGIYGFCYYHYWFNGRRILESPVDAMLESGEPDFPFMLCWANENWTRNWDGSYNKVLLEQKYSKEDFVNHARH LIRYFKDDRYIKIDGRPVFAIYKDDIGEDIEKYLLLFRNELLKNSINVFLCRFERNIGTSRDLNRAFQVFDAGIEFQPLA RQFSYLINYNNRLSRRIYKTLKKHFCFCKNIDDVYVYSHLVDNDLKYDFQQGWPIFPGVCPGWDNSARRRDTTAIIFDKS TPEIFKLWVREKIRITDWNLLPERFLFVNAWNEWAEGNHLEPCEKWGTQYLAALQAGINEM
Specific function: Unknown
COG id: COG3754
COG function: function code M; Lipopolysaccharide biosynthesis protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007739 [H]
Pfam domain/function: PF05045 RgpF [H]
EC number: NA
Molecular weight: Translated: 45450; Mature: 45450
Theoretical pI: Translated: 8.58; Mature: 8.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISVGKGKIMITPDHNIIKPIAIVLPQFHPIRENNLWWGEGFTEWTNVVKGRPRFRGHYQ CCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCC PHLPKDLGYYDLRLPETRKAQAALATKYGIYGFCYYHYWFNGRRILESPVDAMLESGEPD CCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCC FPFMLCWANENWTRNWDGSYNKVLLEQKYSKEDFVNHARHLIRYFKDDRYIKIDGRPVFA CCEEEEECCCCCCCCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCEEEEE IYKDDIGEDIEKYLLLFRNELLKNSINVFLCRFERNIGTSRDLNRAFQVFDAGIEFQPLA EECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHH RQFSYLINYNNRLSRRIYKTLKKHFCFCKNIDDVYVYSHLVDNDLKYDFQQGWPIFPGVC HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCC PGWDNSARRRDTTAIIFDKSTPEIFKLWVREKIRITDWNLLPERFLFVNAWNEWAEGNHL CCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCEEEECCCCCCCCEEEEECCHHHCCCCCC EPCEKWGTQYLAALQAGINEM CHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MISVGKGKIMITPDHNIIKPIAIVLPQFHPIRENNLWWGEGFTEWTNVVKGRPRFRGHYQ CCCCCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCC PHLPKDLGYYDLRLPETRKAQAALATKYGIYGFCYYHYWFNGRRILESPVDAMLESGEPD CCCCCCCCEEEEECCCCHHHHHHHHHHCCCEEEEEEEEEECCCCHHHHHHHHHHHCCCCC FPFMLCWANENWTRNWDGSYNKVLLEQKYSKEDFVNHARHLIRYFKDDRYIKIDGRPVFA CCEEEEECCCCCCCCCCCCCCEEHHHHHCCHHHHHHHHHHHHHHHCCCCEEEECCEEEEE IYKDDIGEDIEKYLLLFRNELLKNSINVFLCRFERNIGTSRDLNRAFQVFDAGIEFQPLA EECCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHH RQFSYLINYNNRLSRRIYKTLKKHFCFCKNIDDVYVYSHLVDNDLKYDFQQGWPIFPGVC HHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCHHHCCCCCCCCCC PGWDNSARRRDTTAIIFDKSTPEIFKLWVREKIRITDWNLLPERFLFVNAWNEWAEGNHL CCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCEEEECCCCCCCCEEEEECCHHHCCCCCC EPCEKWGTQYLAALQAGINEM CHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9385134 [H]