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The map label for this gene is 39996558

Identifier: 39996558

GI number: 39996558

Start: 1597229

End: 1598803

Strand: Direct

Name: 39996558

Synonym: GSU1458

Alternate gene names: NA

Gene position: 1597229-1598803 (Clockwise)

Preceding gene: 39996557

Following gene: 39996559

Centisome position: 41.88

GC content: 62.22

Gene sequence:

>1575_bases
ATGACGAAGACGATCATCCCGGCAGTCATGCTCGTGGTGATGCCCTGTGCGGCACTGGCTTCGGCGCCAGCCGACCTGTT
CCGGGGCGGGAAGATAGACGAGGCGGTGACAGCCTATCGCGCCACCATCGGCCAAGCCTCCGCGGCACGGGAAAAGGCGA
TGCTCCACAAGGAGTTGGGCGATCTGTACGCAGAAAAAGATCAGTATGCCGAAGCAGCTGATGAGTACGTCGCGGCTCTG
GCGCTCGACCACGGCTTTCCAACGACTGAACGGATCAGGATGGCAGTGGCCGTTTCGTGGGCCAACCGGCTGGACGATGC
GATCTTCGCGTTGCGCGCCGTGGTTGCCGACGAACCGGACAACACCACTGCCCGGACCCATCTGGCCCGAACCCTGTCCT
GGCGTGGTGATCAGCCCGATGCCATTGCCGAGGCCGATCGTGTCCTAGCAGCTCGACCCGGAGACCGGGATGCGCTTCTG
GTCAAGGCAAACGCCCTCCGTTGGCAGGGTAACAGTAGCCAGGCCCTGCCGCTCTACCAACAGATCCTGGCGGGGAGTGA
CGACTTCGATACCCGCCTGGGTCTTGCCTTTGCCCAGCTCCAGACCGGCAACAAGCAGGAGGCAACCGCCAATGCCGCCA
TCCTCAAGCCCCGATTCCCCTACCAGGAGCGGGACTTGAAGAGACTCCGGGAGGAAATCGAAAATACCACCGCTAATACG
GTCGAGGCGTCATACACTCGCTACGGTGATTCGGACGACAACAAGGCGGACCGTTTCGGCGTTGCCTACACCCATCGCCA
GGGTGACTGGAGCCTCTCCGGTTCCTACCGCCACTTCACGGTAAACGATACCGTCGGCGACACCTATGCCGACATCCTCG
ATGCGGGCGGTTATCTGCGCCTGGCCGGCCGCTACGGTGTCGGCGCCGGTATCGGCGTGGCTCGTTTGGACAGCGGCTCA
TCCGACATGAACCTGACCTGGCGCCTCAACGCCGACGCCGATGTAGCGCGAGGCGGTGTAAGTCTTTCCCTGCGCAAGGA
CGTTCTCACCGACACCGCATCCCTGGTGGAGAACCGGATCAGATACCTCTCCGCCGGCATCAGCGCCAGCCAGCGCATCA
CCCAGCGCTTTACCCTGTTCGGCGGTTACTCCTGGCGCGACTACTCCGACGACAACAGCGCCCATGACCTGCTTATCGCT
CCGTCCTATACCCTCTACACCGGCGACCCCACGGTGCGGACCGGCTACCGCTTCCGATACCTCAATTTCGACCGCCAGAG
CTTCGGCGGCTATTTCGATCCGAACGACTTCATATCTCACCAGCTTTTTGTCTCCGTCGACTGGCAACTCGACCGCATCT
TCCTCTATGCGGAGCCCTATGGCGGATTCCAGTCCTTCGACCGCTACGGCGATCACACCGACGATATCTTCGGCGGCTTC
AGCGGCACCCTCGGCTACCGCTTTACCAAGCGCCTCACGGGTGAGGTGAACGGGGAGCTCGGCAACTACGCCCTCGGCGC
CACCTCCGGTTTCGAGTACTACTCCGTCGGAACCCGCTTCGCCTATTCCTTCTGA

Upstream 100 bases:

>100_bases
TGTGGATGACGGCACCGATCCGGGGGCGATCCCGCGGCTCAATATCGATAATCGGCTTGACCTTGTTTCGTTCAGTAATT
ATCTCAGGGGGGAATGAAGA

Downstream 100 bases:

>100_bases
TCAGCCGGCTGAACATGCCCCGTTCGGACCTCCGGACGGGGCACGATTTCTTGACTTTTCGCCGAATGTCCGGCTACTAT
GCCCCGTTATGAAAGCCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: TPR Domain Protein

Number of amino acids: Translated: 524; Mature: 523

Protein sequence:

>524_residues
MTKTIIPAVMLVVMPCAALASAPADLFRGGKIDEAVTAYRATIGQASAAREKAMLHKELGDLYAEKDQYAEAADEYVAAL
ALDHGFPTTERIRMAVAVSWANRLDDAIFALRAVVADEPDNTTARTHLARTLSWRGDQPDAIAEADRVLAARPGDRDALL
VKANALRWQGNSSQALPLYQQILAGSDDFDTRLGLAFAQLQTGNKQEATANAAILKPRFPYQERDLKRLREEIENTTANT
VEASYTRYGDSDDNKADRFGVAYTHRQGDWSLSGSYRHFTVNDTVGDTYADILDAGGYLRLAGRYGVGAGIGVARLDSGS
SDMNLTWRLNADADVARGGVSLSLRKDVLTDTASLVENRIRYLSAGISASQRITQRFTLFGGYSWRDYSDDNSAHDLLIA
PSYTLYTGDPTVRTGYRFRYLNFDRQSFGGYFDPNDFISHQLFVSVDWQLDRIFLYAEPYGGFQSFDRYGDHTDDIFGGF
SGTLGYRFTKRLTGEVNGELGNYALGATSGFEYYSVGTRFAYSF

Sequences:

>Translated_524_residues
MTKTIIPAVMLVVMPCAALASAPADLFRGGKIDEAVTAYRATIGQASAAREKAMLHKELGDLYAEKDQYAEAADEYVAAL
ALDHGFPTTERIRMAVAVSWANRLDDAIFALRAVVADEPDNTTARTHLARTLSWRGDQPDAIAEADRVLAARPGDRDALL
VKANALRWQGNSSQALPLYQQILAGSDDFDTRLGLAFAQLQTGNKQEATANAAILKPRFPYQERDLKRLREEIENTTANT
VEASYTRYGDSDDNKADRFGVAYTHRQGDWSLSGSYRHFTVNDTVGDTYADILDAGGYLRLAGRYGVGAGIGVARLDSGS
SDMNLTWRLNADADVARGGVSLSLRKDVLTDTASLVENRIRYLSAGISASQRITQRFTLFGGYSWRDYSDDNSAHDLLIA
PSYTLYTGDPTVRTGYRFRYLNFDRQSFGGYFDPNDFISHQLFVSVDWQLDRIFLYAEPYGGFQSFDRYGDHTDDIFGGF
SGTLGYRFTKRLTGEVNGELGNYALGATSGFEYYSVGTRFAYSF
>Mature_523_residues
TKTIIPAVMLVVMPCAALASAPADLFRGGKIDEAVTAYRATIGQASAAREKAMLHKELGDLYAEKDQYAEAADEYVAALA
LDHGFPTTERIRMAVAVSWANRLDDAIFALRAVVADEPDNTTARTHLARTLSWRGDQPDAIAEADRVLAARPGDRDALLV
KANALRWQGNSSQALPLYQQILAGSDDFDTRLGLAFAQLQTGNKQEATANAAILKPRFPYQERDLKRLREEIENTTANTV
EASYTRYGDSDDNKADRFGVAYTHRQGDWSLSGSYRHFTVNDTVGDTYADILDAGGYLRLAGRYGVGAGIGVARLDSGSS
DMNLTWRLNADADVARGGVSLSLRKDVLTDTASLVENRIRYLSAGISASQRITQRFTLFGGYSWRDYSDDNSAHDLLIAP
SYTLYTGDPTVRTGYRFRYLNFDRQSFGGYFDPNDFISHQLFVSVDWQLDRIFLYAEPYGGFQSFDRYGDHTDDIFGGFS
GTLGYRFTKRLTGEVNGELGNYALGATSGFEYYSVGTRFAYSF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57903; Mature: 57771

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTIIPAVMLVVMPCAALASAPADLFRGGKIDEAVTAYRATIGQASAAREKAMLHKELG
CCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLYAEKDQYAEAADEYVAALALDHGFPTTERIRMAVAVSWANRLDDAIFALRAVVADEPD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEHHHHHHHHHHHHHHHHHCCCCC
NTTARTHLARTLSWRGDQPDAIAEADRVLAARPGDRDALLVKANALRWQGNSSQALPLYQ
CCHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCEEEEEEEEEEECCCCCCCCHHHH
QILAGSDDFDTRLGLAFAQLQTGNKQEATANAAILKPRFPYQERDLKRLREEIENTTANT
HHHCCCCCCCHHHHHHHHHHCCCCCCHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC
VEASYTRYGDSDDNKADRFGVAYTHRQGDWSLSGSYRHFTVNDTVGDTYADILDAGGYLR
EEEHHHCCCCCCCCCCHHCCEEEEECCCCEEECCCEEEEEECCCCCHHHHHHHCCCCEEE
LAGRYGVGAGIGVARLDSGSSDMNLTWRLNADADVARGGVSLSLRKDVLTDTASLVENRI
EECCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHCCCEEEEEHHHHHHHHHHHHHHHH
RYLSAGISASQRITQRFTLFGGYSWRDYSDDNSAHDLLIAPSYTLYTGDPTVRTGYRFRY
HHHHHCCCHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEECCEEEEECCCCEECCEEEEE
LNFDRQSFGGYFDPNDFISHQLFVSVDWQLDRIFLYAEPYGGFQSFDRYGDHTDDIFGGF
ECCCHHHCCCCCCCCHHCCEEEEEEEEEEEEEEEEEECCCCCHHHHHHCCCCCHHHHCCC
SGTLGYRFTKRLTGEVNGELGNYALGATSGFEYYSVGTRFAYSF
CCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCEEEECC
>Mature Secondary Structure 
TKTIIPAVMLVVMPCAALASAPADLFRGGKIDEAVTAYRATIGQASAAREKAMLHKELG
CCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DLYAEKDQYAEAADEYVAALALDHGFPTTERIRMAVAVSWANRLDDAIFALRAVVADEPD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEEEEEEHHHHHHHHHHHHHHHHHCCCCC
NTTARTHLARTLSWRGDQPDAIAEADRVLAARPGDRDALLVKANALRWQGNSSQALPLYQ
CCHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCEEEEEEEEEEECCCCCCCCHHHH
QILAGSDDFDTRLGLAFAQLQTGNKQEATANAAILKPRFPYQERDLKRLREEIENTTANT
HHHCCCCCCCHHHHHHHHHHCCCCCCHHCCCEEEECCCCCCCHHHHHHHHHHHHCCCCCC
VEASYTRYGDSDDNKADRFGVAYTHRQGDWSLSGSYRHFTVNDTVGDTYADILDAGGYLR
EEEHHHCCCCCCCCCCHHCCEEEEECCCCEEECCCEEEEEECCCCCHHHHHHHCCCCEEE
LAGRYGVGAGIGVARLDSGSSDMNLTWRLNADADVARGGVSLSLRKDVLTDTASLVENRI
EECCCCCCCCCCEEEECCCCCCCEEEEEECCCCHHHCCCEEEEEHHHHHHHHHHHHHHHH
RYLSAGISASQRITQRFTLFGGYSWRDYSDDNSAHDLLIAPSYTLYTGDPTVRTGYRFRY
HHHHHCCCHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEECCEEEEECCCCEECCEEEEE
LNFDRQSFGGYFDPNDFISHQLFVSVDWQLDRIFLYAEPYGGFQSFDRYGDHTDDIFGGF
ECCCHHHCCCCCCCCHHCCEEEEEEEEEEEEEEEEEECCCCCHHHHHHCCCCCHHHHCCC
SGTLGYRFTKRLTGEVNGELGNYALGATSGFEYYSVGTRFAYSF
CCCHHHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA