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The map label for this gene is yxkH [H]

Identifier: 39996557

GI number: 39996557

Start: 1596512

End: 1597225

Strand: Direct

Name: yxkH [H]

Synonym: GSU1457

Alternate gene names: 39996557

Gene position: 1596512-1597225 (Clockwise)

Preceding gene: 39996556

Following gene: 39996558

Centisome position: 41.86

GC content: 61.34

Gene sequence:

>714_bases
ATGGCCGTCCCACTGCCGGTCTCGGCCCGGAAGGACACGGTGGTGCCGGTGCTCATGTACCACGATGTCTCCAACCATTT
CCACGATCCCTTTACCATCTCACCCGCGCTCTTTGCCGCCCACATGGAGTGGCTCCATGCTGCCGGCTACCGGGCCGTGA
CGGTGGGGGAAGCCCTGGCCGGGCGGGGAGCCACTGCCGGCAAAATGGTGGTTATCACGTTTGACGACGGCTATGCCTCG
TTTCTGGACTATGTCCATCCGCTTCTGCTTCAGTATGGCTTCTCGGCCGCAATTTCGGTCATCGGCAGTCATGTGGGGAC
CTGGCTGGAGCGGGATGGCCGCCGGCCCATGCTGAGCTGGGACGAGTATCGCTATCTGGCGGCGCGGCGAGTGGAGGTAG
GGTGCCATGCCTATCATCTCCACGCCATCGAGCGGTTGCGGCATGCCTCGGCCGACGAATTGGCTGAAGATCTGGAGCTC
TTTCAGAAGACCATGGCGCGGGAGATGGGGCGGCGGGCTACGCTTCTGGCCTGGCCCTACGGAATCTACACGTCCGAGCG
GGTTCAGATTGCCCGGCAGGCCGGATTTGTGCACATTCTTACCTCCAACGAGGGATATGTGGATGACGGCACCGATCCGG
GGGCGATCCCGCGGCTCAATATCGATAATCGGCTTGACCTTGTTTCGTTCAGTAATTATCTCAGGGGGGAATGA

Upstream 100 bases:

>100_bases
TACTACCTCTACCGGGATGTACTCGACCGGATGCCGGAGTGATGCCGTGAACGTGAGCCGCAGACAATTTCTGATCATCG
GGGGAGCTGCGCTGGCAGCC

Downstream 100 bases:

>100_bases
AGAATGACGAAGACGATCATCCCGGCAGTCATGCTCGTGGTGATGCCCTGTGCGGCACTGGCTTCGGCGCCAGCCGACCT
GTTCCGGGGCGGGAAGATAG

Product: polysaccharide deacetylase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 237; Mature: 236

Protein sequence:

>237_residues
MAVPLPVSARKDTVVPVLMYHDVSNHFHDPFTISPALFAAHMEWLHAAGYRAVTVGEALAGRGATAGKMVVITFDDGYAS
FLDYVHPLLLQYGFSAAISVIGSHVGTWLERDGRRPMLSWDEYRYLAARRVEVGCHAYHLHAIERLRHASADELAEDLEL
FQKTMAREMGRRATLLAWPYGIYTSERVQIARQAGFVHILTSNEGYVDDGTDPGAIPRLNIDNRLDLVSFSNYLRGE

Sequences:

>Translated_237_residues
MAVPLPVSARKDTVVPVLMYHDVSNHFHDPFTISPALFAAHMEWLHAAGYRAVTVGEALAGRGATAGKMVVITFDDGYAS
FLDYVHPLLLQYGFSAAISVIGSHVGTWLERDGRRPMLSWDEYRYLAARRVEVGCHAYHLHAIERLRHASADELAEDLEL
FQKTMAREMGRRATLLAWPYGIYTSERVQIARQAGFVHILTSNEGYVDDGTDPGAIPRLNIDNRLDLVSFSNYLRGE
>Mature_236_residues
AVPLPVSARKDTVVPVLMYHDVSNHFHDPFTISPALFAAHMEWLHAAGYRAVTVGEALAGRGATAGKMVVITFDDGYASF
LDYVHPLLLQYGFSAAISVIGSHVGTWLERDGRRPMLSWDEYRYLAARRVEVGCHAYHLHAIERLRHASADELAEDLELF
QKTMAREMGRRATLLAWPYGIYTSERVQIARQAGFVHILTSNEGYVDDGTDPGAIPRLNIDNRLDLVSFSNYLRGE

Specific function: Unknown

COG id: COG0726

COG function: function code G; Predicted xylanase/chitin deacetylase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide deacetylase family [H]

Homologues:

Organism=Escherichia coli, GI1786322, Length=229, Percent_Identity=25.3275109170306, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787260, Length=255, Percent_Identity=23.1372549019608, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF01522 Polysacc_deac_1 [H]

EC number: NA

Molecular weight: Translated: 26516; Mature: 26385

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVPLPVSARKDTVVPVLMYHDVSNHFHDPFTISPALFAAHMEWLHAAGYRAVTVGEALA
CCCCCCCCCCCCCEEEEEEEECHHHHCCCCCEECHHHHHHHHHHHHHCCCEEEEHHHHHH
GRGATAGKMVVITFDDGYASFLDYVHPLLLQYGFSAAISVIGSHVGTWLERDGRRPMLSW
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
DEYRYLAARRVEVGCHAYHLHAIERLRHASADELAEDLELFQKTMAREMGRRATLLAWPY
HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
GIYTSERVQIARQAGFVHILTSNEGYVDDGTDPGAIPRLNIDNRLDLVSFSNYLRGE
CCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
AVPLPVSARKDTVVPVLMYHDVSNHFHDPFTISPALFAAHMEWLHAAGYRAVTVGEALA
CCCCCCCCCCCCEEEEEEEECHHHHCCCCCEECHHHHHHHHHHHHHCCCEEEEHHHHHH
GRGATAGKMVVITFDDGYASFLDYVHPLLLQYGFSAAISVIGSHVGTWLERDGRRPMLSW
CCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCH
DEYRYLAARRVEVGCHAYHLHAIERLRHASADELAEDLELFQKTMAREMGRRATLLAWPY
HHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECC
GIYTSERVQIARQAGFVHILTSNEGYVDDGTDPGAIPRLNIDNRLDLVSFSNYLRGE
CCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]