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The map label for this gene is ydeM [C]

Identifier: 39996546

GI number: 39996546

Start: 1585073

End: 1586404

Strand: Direct

Name: ydeM [C]

Synonym: GSU1446

Alternate gene names: 39996546

Gene position: 1585073-1586404 (Clockwise)

Preceding gene: 39996545

Following gene: 39996549

Centisome position: 41.56

GC content: 60.44

Gene sequence:

>1332_bases
ATGGTCTTATCGCGCCATGTGATTATTACTCCCTGCCCGGACCGGCCGGGCACGTCCATCCTGTTTTCCGCCAAGCGAGG
AGCGCTCATCCTGGTGGATGATGAGTTGCTTGCTGCCATCGGTGCCGGAGGGCTCGACGCCGACGAGGAGCAGACCCTGG
CCGAACTGGGGTTTCTCGTGCCCGATCACGACAGTGAGCAGCAGGAAATGTGCTCCTTTGTTGATGAAAGCAACCGTGCG
AGCCGATCGTTTGCCGCCCTGATCATCCTGAACCTGAGCTGCAACCTGGCCTGCTCTTACTGTTTCGAGGGAAACAGGAG
GGGCGCGCATTTCATGGACGACGACACGGCGGATCGCCTGGTGGCCTATCTCGTTTCAGGGCCCGTTGCCGAGGGGAGAT
CGCTGTCGCTCAGGTTCTACGGCGGCGAACCGCTCCTGAGCGTCCCCACCATACGGCGTATTGCCCGTCCCTTGAAGAAA
GTGATGGATGCCCGAGGCCTGTCCTTCAGTTTCTCCCTGACCACCAACGGAACGCTCCTGACCCGGGAACTGGTAGAGGA
ACTCATCCCCTTGGGTCTTGTCGGTGCAACGGTTACTCTCGACGGTCCTCCGGATATCCATGATGCGGCCCGGCCGTTTG
TGGGAGGGGAGGGGAGTTTTTCCGTCATTTTCGCCAACCTCAAGGCCGTTGCGGATCTCATAGCCCTGGAGATCGGTGGC
AACTTCACTCCCGAAACCTACCGGGAATATCCGCGCCTCTTCGATCTGCTCGTGGCAGAGGGCCTCGGTCCGGAGCGGCT
CGCTCTCGTTCGGTTCAACGCGGTCATGTCGGCGGGAGAGAATCGGGCACTCCCCGAGTTTACGGGGGGGTGCGCGTCGG
TGAATGAACCCTGGCTCAAGGATGCCACCCTTTTTATCCGTGAGGAGCTGCTGCGCCGAGGATTCCCCGCACCGGGGCTT
TCACCTCATTACTGCGCCATTGAGGCTGAGGACTCACTCATTGTGAACCATGATGGGACCTTCTACCGCTGTCCCGCCTT
TATCGGCATTGAAGGGCTTGCGGCGGGCAGTCTTGATGACGGCCTGTCTGATCATGCCGCCAGCCATGGCCTTGGGGCCT
GGAAGAACGAGGAATGCCTGAGCTGCGCCTATCTGCCCCTCTGCTTCGGTGGCTGTCGCTATTATGGTTACCTGGAGCAT
GGCAGGATCGACCGCGTGTCCTGTGGCCGAGATTTGTTCGATGCTATTGTGGGGCCGTTTCTCGCCCTTGAGGTGAAATA
CCGCCACCAGCCGGGCGAGGATGCCTCCGATACGGACGGCGACTCGGATTGA

Upstream 100 bases:

>100_bases
TTCACTGGAAAAAGGGGAGAGCAATCTCCCCTTTTTCTTTTGGTGAACCCGTGCCGTCCCACAGCATTGTTGGCGGCGAA
ATTGCCCAATGAGGTGATTC

Downstream 100 bases:

>100_bases
GGTGATTCGGGTCTGAGCGTGTGGAACGTGTAACGACCACTGCTTTTTTGCTGGAGTCTGTCACTTGGTCGGGCGCGGCC
GGTTTGTTTCGTCCGGGCCG

Product: radical SAM protein

Products: NA

Alternate protein names: Radical SAM Domain-Containing Protein; Arylsulfatase Regulator; Radical SAM Family Protein; Transcriptional Regulator; AstB/ChuR-Related Protein; Radical Sam Domain Protein; Heme Biosynthesis Family Protein; Arylsulfatase Regulator Fe-S Oxidoreductase; Heme Biosynthesis Related Protein; Arylsulfatase Regulatory Protein; Fe-S Oxidoreductase; Radical Sam Family Protein; Fe-S Oxidoreductases; Heme Biosynthesis; Anaerobic Sulfatase-Maturase Family Protein; Radical SAM

Number of amino acids: Translated: 443; Mature: 443

Protein sequence:

>443_residues
MVLSRHVIITPCPDRPGTSILFSAKRGALILVDDELLAAIGAGGLDADEEQTLAELGFLVPDHDSEQQEMCSFVDESNRA
SRSFAALIILNLSCNLACSYCFEGNRRGAHFMDDDTADRLVAYLVSGPVAEGRSLSLRFYGGEPLLSVPTIRRIARPLKK
VMDARGLSFSFSLTTNGTLLTRELVEELIPLGLVGATVTLDGPPDIHDAARPFVGGEGSFSVIFANLKAVADLIALEIGG
NFTPETYREYPRLFDLLVAEGLGPERLALVRFNAVMSAGENRALPEFTGGCASVNEPWLKDATLFIREELLRRGFPAPGL
SPHYCAIEAEDSLIVNHDGTFYRCPAFIGIEGLAAGSLDDGLSDHAASHGLGAWKNEECLSCAYLPLCFGGCRYYGYLEH
GRIDRVSCGRDLFDAIVGPFLALEVKYRHQPGEDASDTDGDSD

Sequences:

>Translated_443_residues
MVLSRHVIITPCPDRPGTSILFSAKRGALILVDDELLAAIGAGGLDADEEQTLAELGFLVPDHDSEQQEMCSFVDESNRA
SRSFAALIILNLSCNLACSYCFEGNRRGAHFMDDDTADRLVAYLVSGPVAEGRSLSLRFYGGEPLLSVPTIRRIARPLKK
VMDARGLSFSFSLTTNGTLLTRELVEELIPLGLVGATVTLDGPPDIHDAARPFVGGEGSFSVIFANLKAVADLIALEIGG
NFTPETYREYPRLFDLLVAEGLGPERLALVRFNAVMSAGENRALPEFTGGCASVNEPWLKDATLFIREELLRRGFPAPGL
SPHYCAIEAEDSLIVNHDGTFYRCPAFIGIEGLAAGSLDDGLSDHAASHGLGAWKNEECLSCAYLPLCFGGCRYYGYLEH
GRIDRVSCGRDLFDAIVGPFLALEVKYRHQPGEDASDTDGDSD
>Mature_443_residues
MVLSRHVIITPCPDRPGTSILFSAKRGALILVDDELLAAIGAGGLDADEEQTLAELGFLVPDHDSEQQEMCSFVDESNRA
SRSFAALIILNLSCNLACSYCFEGNRRGAHFMDDDTADRLVAYLVSGPVAEGRSLSLRFYGGEPLLSVPTIRRIARPLKK
VMDARGLSFSFSLTTNGTLLTRELVEELIPLGLVGATVTLDGPPDIHDAARPFVGGEGSFSVIFANLKAVADLIALEIGG
NFTPETYREYPRLFDLLVAEGLGPERLALVRFNAVMSAGENRALPEFTGGCASVNEPWLKDATLFIREELLRRGFPAPGL
SPHYCAIEAEDSLIVNHDGTFYRCPAFIGIEGLAAGSLDDGLSDHAASHGLGAWKNEECLSCAYLPLCFGGCRYYGYLEH
GRIDRVSCGRDLFDAIVGPFLALEVKYRHQPGEDASDTDGDSD

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 47887; Mature: 47887

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLSRHVIITPCPDRPGTSILFSAKRGALILVDDELLAAIGAGGLDADEEQTLAELGFLV
CEEECCEEEEECCCCCCCEEEEECCCCEEEEECHHHHHHHCCCCCCCCHHHHHHHHCCCC
PDHDSEQQEMCSFVDESNRASRSFAALIILNLSCNLACSYCFEGNRRGAHFMDDDTADRL
CCCCCHHHHHHHHHHCCCCHHHHEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHH
VAYLVSGPVAEGRSLSLRFYGGEPLLSVPTIRRIARPLKKVMDARGLSFSFSLTTNGTLL
HHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH
TRELVEELIPLGLVGATVTLDGPPDIHDAARPFVGGEGSFSVIFANLKAVADLIALEIGG
HHHHHHHHHCCCEEEEEEEECCCCCHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHEECC
NFTPETYREYPRLFDLLVAEGLGPERLALVRFNAVMSAGENRALPEFTGGCASVNEPWLK
CCCHHHHHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCHH
DATLFIREELLRRGFPAPGLSPHYCAIEAEDSLIVNHDGTFYRCPAFIGIEGLAAGSLDD
HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCEEECCCEECCCCCCCCCCCC
GLSDHAASHGLGAWKNEECLSCAYLPLCFGGCRYYGYLEHGRIDRVSCGRDLFDAIVGPF
CHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHEEEECCCCCCCHHHCCHHHHHHHHCCC
LALEVKYRHQPGEDASDTDGDSD
EEEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MVLSRHVIITPCPDRPGTSILFSAKRGALILVDDELLAAIGAGGLDADEEQTLAELGFLV
CEEECCEEEEECCCCCCCEEEEECCCCEEEEECHHHHHHHCCCCCCCCHHHHHHHHCCCC
PDHDSEQQEMCSFVDESNRASRSFAALIILNLSCNLACSYCFEGNRRGAHFMDDDTADRL
CCCCCHHHHHHHHHHCCCCHHHHEEEEEEEECCCCEEEEEEECCCCCCCCCCCCCHHHHH
VAYLVSGPVAEGRSLSLRFYGGEPLLSVPTIRRIARPLKKVMDARGLSFSFSLTTNGTLL
HHHHHHCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHH
TRELVEELIPLGLVGATVTLDGPPDIHDAARPFVGGEGSFSVIFANLKAVADLIALEIGG
HHHHHHHHHCCCEEEEEEEECCCCCHHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHEECC
NFTPETYREYPRLFDLLVAEGLGPERLALVRFNAVMSAGENRALPEFTGGCASVNEPWLK
CCCHHHHHHHHHHHHHHHHCCCCHHHEEEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCHH
DATLFIREELLRRGFPAPGLSPHYCAIEAEDSLIVNHDGTFYRCPAFIGIEGLAAGSLDD
HHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCEEECCCEECCCCCCCCCCCC
GLSDHAASHGLGAWKNEECLSCAYLPLCFGGCRYYGYLEHGRIDRVSCGRDLFDAIVGPF
CHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHEEEECCCCCCCHHHCCHHHHHHHHCCC
LALEVKYRHQPGEDASDTDGDSD
EEEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA