Definition Geobacter sulfurreducens PCA chromosome, complete genome.
Accession NC_002939
Length 3,814,139

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The map label for this gene is agaY [C]

Identifier: 39996295

GI number: 39996295

Start: 1297385

End: 1298671

Strand: Direct

Name: agaY [C]

Synonym: GSU1193

Alternate gene names: 39996295

Gene position: 1297385-1298671 (Clockwise)

Preceding gene: 39996294

Following gene: 39996296

Centisome position: 34.02

GC content: 60.76

Gene sequence:

>1287_bases
ATGACAGCTCAGTACTCCGCCGATTTCGAGAAGGCCCTGCAGGTCGGCCGTCCCCCCAACATCCGGGCTCTTTTCCCCAA
CTCCAAGGCCCTCATCGTGAGCGGCAAGGTTGTGGACCGGGCCATGCTTGCAAAGGGGAAAGCCATTGCCATGGCCGCCA
ACGGCCGCAACTACTTCGTCATTCGCGGAGCACTGATGGCCGCCCAGCGGGCCAACTGCCCGCTCATCATCGAAATCGCC
AAGTCGGAGGGGGGGCAGAAGGCCTACTGTGCCGTTAATTACTGGAACATGGCCCGCATCGTCGACGCCCTCTGCAACGA
GCTGGGGATCACTGTGCCGGTGGCTATCCATGCCGACCACTACGGCATCAAGAACGACAAGGATCTGAACGCCGCCAAGG
TGGAGATCCCGACCATGTTCGAGGCGGGGATCACCTCCATCGCCATCGACGCCTCTCACCTGCCAGACGACCAGAACCTG
CTGGCCAACCTGGCCATCAATCCGTTCATCCCGTCCTGGGCCGGCCTTGAGACCGAGGTGGGTGAAATCAAGGGGAACAC
AGGCCTTTCCACCGTGGATGAGGCGAAATTCCTTATCCAGGGGCTCAATGCCCACGGCATCTTCCCCGACTGGATCGCCT
TGAACAACGGCACCACCCACGGTCTGGAGGCGTCGGACGCCGGTATCCAGGTCGGGCTCACCGCCGAGATCCATAAGGCT
TTGGAGCCCTACCGGGTCAACGGTGCCCAGCACGGCACCTCGGGCAACAGCTCCGAGCGCCTCCGCGCCATCGCCAATGA
AACTGCCACCACCAAGGCCAACGTGGCCACCGCGCTCCAGATGATCTCCTGGGGGCTTGAGGTGAACGATTACGGCAATG
CTCAACTTGATGCCGACGGCAATTTCATCAAGAAGTCCGATGCCGGCATGAGCGACGAGCTGTGGGCCGAGATGGTGGCC
CATGCCGAAGGCAAAGGTTGGAAGAAGGGGGACTACAAGAACCTGAACCTTCCCTTTGAGAACAAACTGCTGGCGCAGCC
TAGGGAGATCCGCGAGCGGATGGCCAAGGGGGTGGAAGAGTTCGCCTACAAGATGATGACCGAGGTGCTCAATGCCCGGG
ACACGGCACCTTACGCCATAGAGGCGATTCTCTCGGCCGGTTCCTACGACGTGGGGGCAAAGGGAAGCCGTATAGATGAT
CCGGCCCTCTGGACCGAAGCCCGGATCATCGAGCGGGCGAAATCAATTGTGGGTGACAAGGGCGCTGAAGGAAATTTCGA
CGATTAG

Upstream 100 bases:

>100_bases
CCGGGGCAATCGTTCCTTGATTTTACCCACCGGTCATGCTAATAACATGTTGTTTTATTTATAATAAATATGTTTGAATG
CCACTAAACAGGGAGGTGCT

Downstream 100 bases:

>100_bases
TATCCCGCAGCCAGCGGCGTGAAGGGGGGGCAAAAGCCCCCCCTTTTTCCGTTGCTGCTCCGGAGCAGACCATGACAAAT
CTCAGTGTGTTCCTTGTTTC

Product: ketose-bisphosphate aldolase

Products: Glycerone-Phosphate; D-Glyceraldehyde 3-Phosphate. [C]

Alternate protein names: Ketose-Bisphosphate Aldolase Family Protein; Fructose-Bisphosphate Aldolase; Ketose-Bisphosphate Aldolase; Fructose-Bisphosphate Aldolase Class-II; Fructose/Tagatose Bisphosphate Aldolase-Like Protein; Ketose-Bisphosphate Aldolase Class-II Family Protein; Fructose-16-Bisphosphate Aldolase Class II

Number of amino acids: Translated: 428; Mature: 427

Protein sequence:

>428_residues
MTAQYSADFEKALQVGRPPNIRALFPNSKALIVSGKVVDRAMLAKGKAIAMAANGRNYFVIRGALMAAQRANCPLIIEIA
KSEGGQKAYCAVNYWNMARIVDALCNELGITVPVAIHADHYGIKNDKDLNAAKVEIPTMFEAGITSIAIDASHLPDDQNL
LANLAINPFIPSWAGLETEVGEIKGNTGLSTVDEAKFLIQGLNAHGIFPDWIALNNGTTHGLEASDAGIQVGLTAEIHKA
LEPYRVNGAQHGTSGNSSERLRAIANETATTKANVATALQMISWGLEVNDYGNAQLDADGNFIKKSDAGMSDELWAEMVA
HAEGKGWKKGDYKNLNLPFENKLLAQPREIRERMAKGVEEFAYKMMTEVLNARDTAPYAIEAILSAGSYDVGAKGSRIDD
PALWTEARIIERAKSIVGDKGAEGNFDD

Sequences:

>Translated_428_residues
MTAQYSADFEKALQVGRPPNIRALFPNSKALIVSGKVVDRAMLAKGKAIAMAANGRNYFVIRGALMAAQRANCPLIIEIA
KSEGGQKAYCAVNYWNMARIVDALCNELGITVPVAIHADHYGIKNDKDLNAAKVEIPTMFEAGITSIAIDASHLPDDQNL
LANLAINPFIPSWAGLETEVGEIKGNTGLSTVDEAKFLIQGLNAHGIFPDWIALNNGTTHGLEASDAGIQVGLTAEIHKA
LEPYRVNGAQHGTSGNSSERLRAIANETATTKANVATALQMISWGLEVNDYGNAQLDADGNFIKKSDAGMSDELWAEMVA
HAEGKGWKKGDYKNLNLPFENKLLAQPREIRERMAKGVEEFAYKMMTEVLNARDTAPYAIEAILSAGSYDVGAKGSRIDD
PALWTEARIIERAKSIVGDKGAEGNFDD
>Mature_427_residues
TAQYSADFEKALQVGRPPNIRALFPNSKALIVSGKVVDRAMLAKGKAIAMAANGRNYFVIRGALMAAQRANCPLIIEIAK
SEGGQKAYCAVNYWNMARIVDALCNELGITVPVAIHADHYGIKNDKDLNAAKVEIPTMFEAGITSIAIDASHLPDDQNLL
ANLAINPFIPSWAGLETEVGEIKGNTGLSTVDEAKFLIQGLNAHGIFPDWIALNNGTTHGLEASDAGIQVGLTAEIHKAL
EPYRVNGAQHGTSGNSSERLRAIANETATTKANVATALQMISWGLEVNDYGNAQLDADGNFIKKSDAGMSDELWAEMVAH
AEGKGWKKGDYKNLNLPFENKLLAQPREIRERMAKGVEEFAYKMMTEVLNARDTAPYAIEAILSAGSYDVGAKGSRIDDP
ALWTEARIIERAKSIVGDKGAEGNFDD

Specific function: Catalyzes The Reversible Condensation Of Dihydroxyacetone Phosphate With Glyceraldehyde 3-Phosphate To Produce Tagatose 1,6-Bisphosphate. [C]

COG id: COG0191

COG function: function code G; Fructose/tagatose bisphosphate aldolase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 4.1.2.- [C]

Molecular weight: Translated: 46115; Mature: 45984

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQYSADFEKALQVGRPPNIRALFPNSKALIVSGKVVDRAMLAKGKAIAMAANGRNYFV
CCCCCCCCHHHHHHCCCCCCEEEECCCCCEEEEECHHHHHHHHCCCCEEEEEECCCEEEE
IRGALMAAQRANCPLIIEIAKSEGGQKAYCAVNYWNMARIVDALCNELGITVPVAIHADH
EEHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEEECCC
YGIKNDKDLNAAKVEIPTMFEAGITSIAIDASHLPDDQNLLANLAINPFIPSWAGLETEV
CCCCCCCCCCCEEEECCCHHHCCCCEEEEEHHCCCCHHHHHHHHEECCCCCCCCCCCCHH
GEIKGNTGLSTVDEAKFLIQGLNAHGIFPDWIALNNGTTHGLEASDAGIQVGLTAEIHKA
HHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEHHHHHHC
LEPYRVNGAQHGTSGNSSERLRAIANETATTKANVATALQMISWGLEVNDYGNAQLDADG
CCCEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEECCCCCEEECCCC
NFIKKSDAGMSDELWAEMVAHAEGKGWKKGDYKNLNLPFENKLLAQPREIRERMAKGVEE
CEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
FAYKMMTEVLNARDTAPYAIEAILSAGSYDVGAKGSRIDDPALWTEARIIERAKSIVGDK
HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
GAEGNFDD
CCCCCCCC
>Mature Secondary Structure 
TAQYSADFEKALQVGRPPNIRALFPNSKALIVSGKVVDRAMLAKGKAIAMAANGRNYFV
CCCCCCCHHHHHHCCCCCCEEEECCCCCEEEEECHHHHHHHHCCCCEEEEEECCCEEEE
IRGALMAAQRANCPLIIEIAKSEGGQKAYCAVNYWNMARIVDALCNELGITVPVAIHADH
EEHHHHHHHCCCCCEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEEECCC
YGIKNDKDLNAAKVEIPTMFEAGITSIAIDASHLPDDQNLLANLAINPFIPSWAGLETEV
CCCCCCCCCCCEEEECCCHHHCCCCEEEEEHHCCCCHHHHHHHHEECCCCCCCCCCCCHH
GEIKGNTGLSTVDEAKFLIQGLNAHGIFPDWIALNNGTTHGLEASDAGIQVGLTAEIHKA
HHCCCCCCCCHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEEEEHHHHHHC
LEPYRVNGAQHGTSGNSSERLRAIANETATTKANVATALQMISWGLEVNDYGNAQLDADG
CCCEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEECCCCCEEECCCC
NFIKKSDAGMSDELWAEMVAHAEGKGWKKGDYKNLNLPFENKLLAQPREIRERMAKGVEE
CEEECCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
FAYKMMTEVLNARDTAPYAIEAILSAGSYDVGAKGSRIDDPALWTEARIIERAKSIVGDK
HHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
GAEGNFDD
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: D-Tagatose 1,6-Bisphosphate 1,6-Bisphosphate [C]

Specific reaction: D-Tagatose 1,6-Bisphosphate 1,6-Bisphosphate = Glycerone-Phosphate + D-Glyceraldehyde 3-Phosphate. [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA