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The map label for this gene is 39996110

Identifier: 39996110

GI number: 39996110

Start: 1086843

End: 1088495

Strand: Reverse

Name: 39996110

Synonym: GSU1007

Alternate gene names: NA

Gene position: 1088495-1086843 (Counterclockwise)

Preceding gene: 39996121

Following gene: 39996108

Centisome position: 28.54

GC content: 63.16

Gene sequence:

>1653_bases
ATGACCGGCACCTACACCGAACTCATCGAGGGAAGCGAGCGATTGAGCGGGCTTACTGATGTGGACGAGGTAATCAAAGA
CCTCTCCCGTCTGCTGCGCAAGCTCGTCAAGACCCGATGGATCGCCGTTTATTTCTTCGACCGGGAACGGAGGGACTTCG
CCCCGGCCCGCAGCACGGGACTCCCTGCCAGCTTCCTTCCCGTGTTTCGCGAGATGCCGCTGGCTCCGGACAAGATACCC
CTCCTGAAAAGCATGCTCCGCAAGCGGCAGCACCTGATGCTCACTGATCCCGGCTCCTCGGACCTGCTCACCCCGAAGCT
CCGGAAACTCCTCCGGAACCTCTGCGTCCTGGCGGTCCCCATGGTGGTCAGGACCCAGGTCATCGGTGCCGTGTTCATGG
CCCGGACTCGCGACAATCCTCCCTTCTCCGACGCTGAAACCGCCATCATCCGCGACCTGGTCTCCCACGCGGCACTGGTG
GTTTCCCACATGCAGCTCTTCGACGAGTCTCTGGACATGGCCCTGGACCTGGCGGGCCGTATCGACGTAATCCTCACCAT
CGACGAAATCAACAAGGCCATCTCCTCTTCTCTTTCTCGGGAAAGGATCATGGAAACGGCCATGGCGCAGGTGGAGCGGA
TTACCGGCTGCGAGTTCGTGGCAATCCTCCAGGCGGAAAACGGAGGGCTCAAGGTCATGTCGTCCCATGCCTCGGGGCTT
GAGATCCCCGCGGCCCTCCGCCCCGGTGCGCCCCTGTCGCTTGCTGGCTGTACCGCCTGGACTGCCTTCCGCACCGGCCG
CAGCGCGAGCATTGCCGACTTGGCCGATACCAGGAAGCCCGGCACCGTTTCCCGGACCCTTCTGGCCGCCGGCATCCGGT
CGCTCCTGGCCATTCCCCTCATGTCGCGCGACCAGGTCAAGGGCGTGCTGCTGCTGGGCGACACGGAACCCGACAAGTTC
GCCCGGGGCGAGACCTTTACTATTGAGAAGATCGCGTCACAGATGGCGGTGGCACTGGAAAACGCCCGGCTTTATGAAGA
CATGCGCAGCCTGTTCTTCAACACCGTGTCCAGCCTGGCCAATGCCATCGATGCCAAGAGTCCCTGGACCAAGGGACACT
CGGAACGGGTCATGCACATTTCGACCCGCATCGCCAAGGAGATGGGGCTTTCGGAACAGGAAGTGGAACAGATCCGGCTC
GGGGGGCTGCTGCACGATATCGGCAAGATCGGCGTCATCGAGGCGCTTCTGGAGAAGCCGGCGCTCCTTTCTGAGGACGA
ATTCCCTCCCATGAGGCTCCATCCGGAAAAGGGGGTTGCCATCCTGGCCCCCATCGCCCAGCTGAAGGAGGTGCTCCCCG
TTATCCTCTACCACCATGAACGGCTGGACGGCTCGGGCTACCCCGAGGGGCTCACCGGTGATCACATCCCCCTGGGGGCA
CGCATCGTGGCGGTGGCCGACTCCTTCGACGCCATGGTGTCGGAGCGGCCCTACAAGCATGCCAACACCCTCACGGAGGC
CCTGGAAGAGCTTCGTGCCGGCGCCGGCAGCCAGTTCGATCCGGTCGTGGTCGAATGCTTCGCCAGGTATGTCAAGCGGG
TAATGGGCAAAGGGGGCGGCAACACGCCCGGTGTGCTCTGGGAAGCTGCCTGA

Upstream 100 bases:

>100_bases
CACTTCGGCTCGGCGCAGAGGGGATAGTAATACAAAAAAACCCCCTCGTTGGCAAGACATATGGCGATTTTATGATACAA
GTGTGAATGGGGAGGACGCC

Downstream 100 bases:

>100_bases
AGGGATCAGGGGGTGAACGGCGGGCGACGGTTTATTCCGTCTCCTCCGGCGGAGCTGCAGGGGCGGGACTCACCGGTTCG
CGAGCGCCACGCACTTCCTC

Product: GAF domain/HD domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 550; Mature: 549

Protein sequence:

>550_residues
MTGTYTELIEGSERLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIP
LLKSMLRKRQHLMLTDPGSSDLLTPKLRKLLRNLCVLAVPMVVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAALV
VSHMQLFDESLDMALDLAGRIDVILTIDEINKAISSSLSRERIMETAMAQVERITGCEFVAILQAENGGLKVMSSHASGL
EIPAALRPGAPLSLAGCTAWTAFRTGRSASIADLADTRKPGTVSRTLLAAGIRSLLAIPLMSRDQVKGVLLLGDTEPDKF
ARGETFTIEKIASQMAVALENARLYEDMRSLFFNTVSSLANAIDAKSPWTKGHSERVMHISTRIAKEMGLSEQEVEQIRL
GGLLHDIGKIGVIEALLEKPALLSEDEFPPMRLHPEKGVAILAPIAQLKEVLPVILYHHERLDGSGYPEGLTGDHIPLGA
RIVAVADSFDAMVSERPYKHANTLTEALEELRAGAGSQFDPVVVECFARYVKRVMGKGGGNTPGVLWEAA

Sequences:

>Translated_550_residues
MTGTYTELIEGSERLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIP
LLKSMLRKRQHLMLTDPGSSDLLTPKLRKLLRNLCVLAVPMVVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAALV
VSHMQLFDESLDMALDLAGRIDVILTIDEINKAISSSLSRERIMETAMAQVERITGCEFVAILQAENGGLKVMSSHASGL
EIPAALRPGAPLSLAGCTAWTAFRTGRSASIADLADTRKPGTVSRTLLAAGIRSLLAIPLMSRDQVKGVLLLGDTEPDKF
ARGETFTIEKIASQMAVALENARLYEDMRSLFFNTVSSLANAIDAKSPWTKGHSERVMHISTRIAKEMGLSEQEVEQIRL
GGLLHDIGKIGVIEALLEKPALLSEDEFPPMRLHPEKGVAILAPIAQLKEVLPVILYHHERLDGSGYPEGLTGDHIPLGA
RIVAVADSFDAMVSERPYKHANTLTEALEELRAGAGSQFDPVVVECFARYVKRVMGKGGGNTPGVLWEAA
>Mature_549_residues
TGTYTELIEGSERLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTGLPASFLPVFREMPLAPDKIPL
LKSMLRKRQHLMLTDPGSSDLLTPKLRKLLRNLCVLAVPMVVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAALVV
SHMQLFDESLDMALDLAGRIDVILTIDEINKAISSSLSRERIMETAMAQVERITGCEFVAILQAENGGLKVMSSHASGLE
IPAALRPGAPLSLAGCTAWTAFRTGRSASIADLADTRKPGTVSRTLLAAGIRSLLAIPLMSRDQVKGVLLLGDTEPDKFA
RGETFTIEKIASQMAVALENARLYEDMRSLFFNTVSSLANAIDAKSPWTKGHSERVMHISTRIAKEMGLSEQEVEQIRLG
GLLHDIGKIGVIEALLEKPALLSEDEFPPMRLHPEKGVAILAPIAQLKEVLPVILYHHERLDGSGYPEGLTGDHIPLGAR
IVAVADSFDAMVSERPYKHANTLTEALEELRAGAGSQFDPVVVECFARYVKRVMGKGGGNTPGVLWEAA

Specific function: Unknown

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR003607 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 60198; Mature: 60066

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGTYTELIEGSERLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTG
CCCCHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCC
LPASFLPVFREMPLAPDKIPLLKSMLRKRQHLMLTDPGSSDLLTPKLRKLLRNLCVLAVP
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
MVVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAALVVSHMQLFDESLDMALDLAGR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IDVILTIDEINKAISSSLSRERIMETAMAQVERITGCEFVAILQAENGGLKVMSSHASGL
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCCCC
EIPAALRPGAPLSLAGCTAWTAFRTGRSASIADLADTRKPGTVSRTLLAAGIRSLLAIPL
CCCCCCCCCCCCEEHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
MSRDQVKGVLLLGDTEPDKFARGETFTIEKIASQMAVALENARLYEDMRSLFFNTVSSLA
CCCCCCCEEEEEECCCCCHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAIDAKSPWTKGHSERVMHISTRIAKEMGLSEQEVEQIRLGGLLHDIGKIGVIEALLEKP
HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ALLSEDEFPPMRLHPEKGVAILAPIAQLKEVLPVILYHHERLDGSGYPEGLTGDHIPLGA
CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
RIVAVADSFDAMVSERPYKHANTLTEALEELRAGAGSQFDPVVVECFARYVKRVMGKGGG
EEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
NTPGVLWEAA
CCCCEEEECC
>Mature Secondary Structure 
TGTYTELIEGSERLSGLTDVDEVIKDLSRLLRKLVKTRWIAVYFFDRERRDFAPARSTG
CCCHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCC
LPASFLPVFREMPLAPDKIPLLKSMLRKRQHLMLTDPGSSDLLTPKLRKLLRNLCVLAVP
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCEEEECCCCCCCCCHHHHHHHHHHHHHHHH
MVVRTQVIGAVFMARTRDNPPFSDAETAIIRDLVSHAALVVSHMQLFDESLDMALDLAGR
HHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
IDVILTIDEINKAISSSLSRERIMETAMAQVERITGCEFVAILQAENGGLKVMSSHASGL
EEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCEEEEECCCCCC
EIPAALRPGAPLSLAGCTAWTAFRTGRSASIADLADTRKPGTVSRTLLAAGIRSLLAIPL
CCCCCCCCCCCCEEHHHHHHHHHHCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHCCC
MSRDQVKGVLLLGDTEPDKFARGETFTIEKIASQMAVALENARLYEDMRSLFFNTVSSLA
CCCCCCCEEEEEECCCCCHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NAIDAKSPWTKGHSERVMHISTRIAKEMGLSEQEVEQIRLGGLLHDIGKIGVIEALLEKP
HHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
ALLSEDEFPPMRLHPEKGVAILAPIAQLKEVLPVILYHHERLDGSGYPEGLTGDHIPLGA
CCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
RIVAVADSFDAMVSERPYKHANTLTEALEELRAGAGSQFDPVVVECFARYVKRVMGKGGG
EEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCC
NTPGVLWEAA
CCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]