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The map label for this gene is ycaC [C]

Identifier: 39996105

GI number: 39996105

Start: 1082223

End: 1082786

Strand: Reverse

Name: ycaC [C]

Synonym: GSU1002

Alternate gene names: 39996105

Gene position: 1082786-1082223 (Counterclockwise)

Preceding gene: 39996106

Following gene: 39996100

Centisome position: 28.39

GC content: 60.82

Gene sequence:

>564_bases
ATGGGAATTATGGAGAAGTTCTTCCTCGACCGGCAGCAGGCAGTGCTCGTGGTCATCGACGTGCAGGAAAAGCTCTGCGC
GGCCATGGACCCGGAAGTTCTGGAACGGCTCACGAAAAATACCGGCATTCTGCTGGAGGCCGCCCAGGATCTCGGCATGC
CGGTGGTTGCCACTGAGCAGTACGTGAAAGGCCTCGGCTGCACCCTTCCGGTCCTGAAGGAAAAGATCGAGGGAGACGCT
TGCGAGAAAATGACCTTCAGCTGCTGCGGCGACGACGCGTTCCTGAACCGTCTCGCGGCACTGGGACGCAAGCAGGTCAT
CATCACCGGCATGGAAACCCATGTCTGCGTGCTCCAGACGGTCATCGAGCTCCTGGAGCGGGGCTACCATGTCCACCTGG
TGCGGGATGCCATTATGAGCCGCCGCAAGGAAAACTGGTTCGTGGGAATGGAAGTGGCGCGGGACGCCGGCGCGGTCATC
ACCTCCACCGAAGCGGCCCTGTTCCAGCTCCTCCGCGTGGCCGGCAGCGAAGAGTTCAAAAAACTGTCGAAACTGGTGCG
CTAG

Upstream 100 bases:

>100_bases
AAAGGAGCTGAGATCCTCGGCATTAACCGCAACACGCTACGCAAGAAGATTCAGGAGCTGGGCATCGAACTGAGAAAAGA
CTGAAAGGAGGGAGCATCTG

Downstream 100 bases:

>100_bases
CAGATCGCGGTCGCACGCCATTCCGGGCCGTCCGAAGAGGACGGCCCTTTTTTTGTTGTTGCATGCGCCGGACTACCCGG
CATCACGGGTTCCGGGATAA

Product: isochorismatase

Products: NA

Alternate protein names: Isochorismatase Family Protein; Isochorismatase Superfamily Hydrolase; Isochorismatase Hydrolase Family Protein; Nicotinamidase-Like Amidase; Amidase; Isochorismatase Family Hydrolase; Isochorismatase Domain-Containing; Hydrolase; Amidohydrolase; Hydrolase Isochorismatase; Amidase Related Nicotinamidase; YcaC Like Amidohydrolase; Isochorismatase Family; Isochorismatase; Nicotinamidase; YcaC-Related Amidohydrolase; Isochorismatase Domain-Containing A; Isochorismatase Hydrolase Family; Hydrolase Isochorismatase Family; Nicotinamidase-Related Amidase

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MGIMEKFFLDRQQAVLVVIDVQEKLCAAMDPEVLERLTKNTGILLEAAQDLGMPVVATEQYVKGLGCTLPVLKEKIEGDA
CEKMTFSCCGDDAFLNRLAALGRKQVIITGMETHVCVLQTVIELLERGYHVHLVRDAIMSRRKENWFVGMEVARDAGAVI
TSTEAALFQLLRVAGSEEFKKLSKLVR

Sequences:

>Translated_187_residues
MGIMEKFFLDRQQAVLVVIDVQEKLCAAMDPEVLERLTKNTGILLEAAQDLGMPVVATEQYVKGLGCTLPVLKEKIEGDA
CEKMTFSCCGDDAFLNRLAALGRKQVIITGMETHVCVLQTVIELLERGYHVHLVRDAIMSRRKENWFVGMEVARDAGAVI
TSTEAALFQLLRVAGSEEFKKLSKLVR
>Mature_186_residues
GIMEKFFLDRQQAVLVVIDVQEKLCAAMDPEVLERLTKNTGILLEAAQDLGMPVVATEQYVKGLGCTLPVLKEKIEGDAC
EKMTFSCCGDDAFLNRLAALGRKQVIITGMETHVCVLQTVIELLERGYHVHLVRDAIMSRRKENWFVGMEVARDAGAVIT
STEAALFQLLRVAGSEEFKKLSKLVR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI103471987, Length=144, Percent_Identity=35.4166666666667, Blast_Score=87, Evalue=7e-18,
Organism=Homo sapiens, GI209969695, Length=178, Percent_Identity=33.1460674157303, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI13376007, Length=194, Percent_Identity=30.4123711340206, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17540156, Length=184, Percent_Identity=35.3260869565217, Blast_Score=108, Evalue=1e-24,
Organism=Drosophila melanogaster, GI19922924, Length=186, Percent_Identity=29.5698924731183, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI21357489, Length=178, Percent_Identity=32.0224719101124, Blast_Score=79, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20787; Mature: 20656

Theoretical pI: Translated: 5.77; Mature: 5.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIMEKFFLDRQQAVLVVIDVQEKLCAAMDPEVLERLTKNTGILLEAAQDLGMPVVATEQ
CCCHHHHHHCCCCEEEEEEECHHHHHHCCCHHHHHHHHCCCCCEEEEHHHCCCCEEHHHH
YVKGLGCTLPVLKEKIEGDACEKMTFSCCGDDAFLNRLAALGRKQVIITGMETHVCVLQT
HHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH
VIELLERGYHVHLVRDAIMSRRKENWFVGMEVARDAGAVITSTEAALFQLLRVAGSEEFK
HHHHHHCCCEEHHHHHHHHHHHHCCCEEHHHHHHCCCCEEECHHHHHHHHHHHHCCHHHH
KLSKLVR
HHHHHCC
>Mature Secondary Structure 
GIMEKFFLDRQQAVLVVIDVQEKLCAAMDPEVLERLTKNTGILLEAAQDLGMPVVATEQ
CCHHHHHHCCCCEEEEEEECHHHHHHCCCHHHHHHHHCCCCCEEEEHHHCCCCEEHHHH
YVKGLGCTLPVLKEKIEGDACEKMTFSCCGDDAFLNRLAALGRKQVIITGMETHVCVLQT
HHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHH
VIELLERGYHVHLVRDAIMSRRKENWFVGMEVARDAGAVITSTEAALFQLLRVAGSEEFK
HHHHHHCCCEEHHHHHHHHHHHHCCCEEHHHHHHCCCCEEECHHHHHHHHHHHHCCHHHH
KLSKLVR
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA