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The map label for this gene is 39996051

Identifier: 39996051

GI number: 39996051

Start: 1020101

End: 1021300

Strand: Reverse

Name: 39996051

Synonym: GSU0948

Alternate gene names: NA

Gene position: 1021300-1020101 (Counterclockwise)

Preceding gene: 39996052

Following gene: 39996050

Centisome position: 26.78

GC content: 65.75

Gene sequence:

>1200_bases
GTGAACCTGGCGGTCCGCGACATCCGCTGCCACCGGGGGCGTTTCGTCCAGACCTGCCTGGGGCTGGGGCTGCTCCTGGC
CGTGGTCATGAGCATGGGGGGGATCTACCGTGGCCTCGTGGCTGACGCACTGGCCATCCTTGAGGCAACCGGCGCCGACG
TCTGGGTGGTGCAGCAGGGGACCAGCGGCCCCTTTGCCGCCACCTCCCGCATGCCCGAGGACCTCAAGTACCGGATCAGG
GCCGTGCCGGGGGTCAGCCAGGCATCCCCTCTCTCCTTCCAGAATATCCAGCTGGAGCGCTTCGGCGAGCCGTTCCGCTT
CTTTCTGGTGGGATACGAACCGGGAGGGCTCGGCGGACCGCCGGCCATCGTGGAGGGGCGAGGGATCGGTCAGAAGCACT
ACGAGCTGGTGGCCGACCGGGCCATGGGGCTGGCGGTGGGCGAGCGGCTCGCCATAGCCGGCGACGTCTACACCGTGGTG
GGGCTTACCCGGAAGATGGTTTCCTCCAGCGGCGATCCGGTGGCCTGGGTAACGCTGGAGGATGCCCAGAAGATCCAGTT
CAAGGAGGACAACAACGCCATTCGCAATAATCGCGTGCGGATCGCGGACCGGGTGGCCCGGAAGGGGCTGCCGCCGGTCC
AGGCGGAACAGGCATCTGCCCTGGCGGAAGAGCTCACCGGCTCCACCCACATCGTCAACACCGTGGTGGCACGCCTGGCG
CCGGGAGCCGAACCGGCGCGGGTCCGCGCCGGGATCGATCGCTGGAACCATCTGCGCGCCATCTCCGATGAGGAGCAGAC
AACCATCCTCACCGAAGGGATGATCAAGAAGGCCAAGATGCAGCTGGGGCTGTTCCGGGCGATCCTGCTCGTCATCTCGG
GGGTCATCATCTCGCTCATCATCTACACGTCAACCCTCGACAAGATCAGGACCATCGCCACCCTCAAGCTGATCGGCGCC
AAGAACCGGGTTATCGTCGGCCTGATCCTCCAGCAGTCGATCCTGATGGGGGTCATCGCCTACGCCATCGGCTACGTCCT
CATCACCCTCACCCAGGAAAAGTTTCCGCGCCGGGTGGAACTGCTGGCGACCGACCTCCGGATGCTCTTCCTCATCGTGG
TGGTAATCTGCGTGGCAGCGAGCATGGTGGGCATCCGCAAGGCGCTGAAGGTGGAAGCCGCCGACGCCCTGAGCTCGTAA

Upstream 100 bases:

>100_bases
CCGAGATCCTGTCGGGCCTGGCCGGGGCCGAGCCGGTGGTGCTGCCGACGCCGGCCCAGGCGAAGAAATTCCGTGACGGC
ATGAAGGTGAGGGTGTCGCC

Downstream 100 bases:

>100_bases
CAACGGGAGGAATCTGCATGTACGCGGTGGAAGTGGAAAACCTGACAAAGATTTACGGGACGGGAGAAACGGCGGTCAGG
GCGCTCACCGACGCCTCCTT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 399; Mature: 399

Protein sequence:

>399_residues
MNLAVRDIRCHRGRFVQTCLGLGLLLAVVMSMGGIYRGLVADALAILEATGADVWVVQQGTSGPFAATSRMPEDLKYRIR
AVPGVSQASPLSFQNIQLERFGEPFRFFLVGYEPGGLGGPPAIVEGRGIGQKHYELVADRAMGLAVGERLAIAGDVYTVV
GLTRKMVSSSGDPVAWVTLEDAQKIQFKEDNNAIRNNRVRIADRVARKGLPPVQAEQASALAEELTGSTHIVNTVVARLA
PGAEPARVRAGIDRWNHLRAISDEEQTTILTEGMIKKAKMQLGLFRAILLVISGVIISLIIYTSTLDKIRTIATLKLIGA
KNRVIVGLILQQSILMGVIAYAIGYVLITLTQEKFPRRVELLATDLRMLFLIVVVICVAASMVGIRKALKVEAADALSS

Sequences:

>Translated_399_residues
MNLAVRDIRCHRGRFVQTCLGLGLLLAVVMSMGGIYRGLVADALAILEATGADVWVVQQGTSGPFAATSRMPEDLKYRIR
AVPGVSQASPLSFQNIQLERFGEPFRFFLVGYEPGGLGGPPAIVEGRGIGQKHYELVADRAMGLAVGERLAIAGDVYTVV
GLTRKMVSSSGDPVAWVTLEDAQKIQFKEDNNAIRNNRVRIADRVARKGLPPVQAEQASALAEELTGSTHIVNTVVARLA
PGAEPARVRAGIDRWNHLRAISDEEQTTILTEGMIKKAKMQLGLFRAILLVISGVIISLIIYTSTLDKIRTIATLKLIGA
KNRVIVGLILQQSILMGVIAYAIGYVLITLTQEKFPRRVELLATDLRMLFLIVVVICVAASMVGIRKALKVEAADALSS
>Mature_399_residues
MNLAVRDIRCHRGRFVQTCLGLGLLLAVVMSMGGIYRGLVADALAILEATGADVWVVQQGTSGPFAATSRMPEDLKYRIR
AVPGVSQASPLSFQNIQLERFGEPFRFFLVGYEPGGLGGPPAIVEGRGIGQKHYELVADRAMGLAVGERLAIAGDVYTVV
GLTRKMVSSSGDPVAWVTLEDAQKIQFKEDNNAIRNNRVRIADRVARKGLPPVQAEQASALAEELTGSTHIVNTVVARLA
PGAEPARVRAGIDRWNHLRAISDEEQTTILTEGMIKKAKMQLGLFRAILLVISGVIISLIIYTSTLDKIRTIATLKLIGA
KNRVIVGLILQQSILMGVIAYAIGYVLITLTQEKFPRRVELLATDLRMLFLIVVVICVAASMVGIRKALKVEAADALSS

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0577

COG function: function code V; ABC-type antimicrobial peptide transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 43146; Mature: 43146

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLAVRDIRCHRGRFVQTCLGLGLLLAVVMSMGGIYRGLVADALAILEATGADVWVVQQG
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEECC
TSGPFAATSRMPEDLKYRIRAVPGVSQASPLSFQNIQLERFGEPFRFFLVGYEPGGLGGP
CCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCHHCEEHHHCCCCEEEEEEEECCCCCCCC
PAIVEGRGIGQKHYELVADRAMGLAVGERLAIAGDVYTVVGLTRKMVSSSGDPVAWVTLE
CCEEECCCCCHHHHHHHHHHHHHHHHCCHHEECCHHHHHHHHHHHHHHCCCCCEEEEEEC
DAQKIQFKEDNNAIRNNRVRIADRVARKGLPPVQAEQASALAEELTGSTHIVNTVVARLA
CCCEEEEECCCCHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
PGAEPARVRAGIDRWNHLRAISDEEQTTILTEGMIKKAKMQLGLFRAILLVISGVIISLI
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYTSTLDKIRTIATLKLIGAKNRVIVGLILQQSILMGVIAYAIGYVLITLTQEKFPRRVE
HHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHH
LLATDLRMLFLIVVVICVAASMVGIRKALKVEAADALSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNLAVRDIRCHRGRFVQTCLGLGLLLAVVMSMGGIYRGLVADALAILEATGADVWVVQQG
CCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEECC
TSGPFAATSRMPEDLKYRIRAVPGVSQASPLSFQNIQLERFGEPFRFFLVGYEPGGLGGP
CCCCCHHHCCCCHHHHHHHHCCCCCCCCCCCCHHCEEHHHCCCCEEEEEEEECCCCCCCC
PAIVEGRGIGQKHYELVADRAMGLAVGERLAIAGDVYTVVGLTRKMVSSSGDPVAWVTLE
CCEEECCCCCHHHHHHHHHHHHHHHHCCHHEECCHHHHHHHHHHHHHHCCCCCEEEEEEC
DAQKIQFKEDNNAIRNNRVRIADRVARKGLPPVQAEQASALAEELTGSTHIVNTVVARLA
CCCEEEEECCCCHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHC
PGAEPARVRAGIDRWNHLRAISDEEQTTILTEGMIKKAKMQLGLFRAILLVISGVIISLI
CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IYTSTLDKIRTIATLKLIGAKNRVIVGLILQQSILMGVIAYAIGYVLITLTQEKFPRRVE
HHHHHHHHHHHHHHHHEECCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHHH
LLATDLRMLFLIVVVICVAASMVGIRKALKVEAADALSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]