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The map label for this gene is ygfS [H]

Identifier: 39996014

GI number: 39996014

Start: 976671

End: 977150

Strand: Reverse

Name: ygfS [H]

Synonym: GSU0911

Alternate gene names: 39996014

Gene position: 977150-976671 (Counterclockwise)

Preceding gene: 39996015

Following gene: 39996013

Centisome position: 25.62

GC content: 63.12

Gene sequence:

>480_bases
ATGCAGAAGCTGATCCGCGTCGAGCCGGCCAAATGCGTCGGCTGCAAGTCGTGCGAGCTGGCCTGTTCGTTCAGGCACCG
CGGGGAGTTCGCGCCCAGCAAGGCCCGCATCGTCAATGAGGTTTTCCTGGAGGAGGCCAAGTTCATCACCGTCACCTGCA
TGCAGTGCGACGATCCCTGGTGCCTCAAGGCATGCCCCAAGGGGGCCATCGCCAAAGATGCGGCCAGCGGCGTGGTGGCA
GTGGACGAGCTGAAGTGCGTGGGCTGCCGCACCTGCGTCAGCGCCTGTCCCTTCGGCATGATCAAGTACCTTCCCGAGAC
CAGGAAGGCCGACAAGTGCACGCTCTGCGCTCCCGATGTACCCGAATGCGTCATCTTCTGCCCCACCCACTGCCTGACAT
TCGCCGAGGAAGACGCGCCGCTGCGGGCAAAGGTGCTCAAATTCGTCCAGACCGTCAAAGACGGCCAGATGGAGGTGTGA

Upstream 100 bases:

>100_bases
TATGGGGAGGAAACCCTGGACACACCGCTCCAATGACGCAAACCGAGTGGGAGTTTCCAGTTACCGCGACTCCCCGGCAT
CCCCCTAAAGGAGGGTCACC

Downstream 100 bases:

>100_bases
CATGGGAAGCGGATGGCACGGCAGAGTCCTGCGGGTAGACCTGGCGGCGCGGCGTTGCAGCATCGAGGAACTGAACGGGA
CGTGGGCACGGGAATTCATC

Product: iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 159; Mature: 159

Protein sequence:

>159_residues
MQKLIRVEPAKCVGCKSCELACSFRHRGEFAPSKARIVNEVFLEEAKFITVTCMQCDDPWCLKACPKGAIAKDAASGVVA
VDELKCVGCRTCVSACPFGMIKYLPETRKADKCTLCAPDVPECVIFCPTHCLTFAEEDAPLRAKVLKFVQTVKDGQMEV

Sequences:

>Translated_159_residues
MQKLIRVEPAKCVGCKSCELACSFRHRGEFAPSKARIVNEVFLEEAKFITVTCMQCDDPWCLKACPKGAIAKDAASGVVA
VDELKCVGCRTCVSACPFGMIKYLPETRKADKCTLCAPDVPECVIFCPTHCLTFAEEDAPLRAKVLKFVQTVKDGQMEV
>Mature_159_residues
MQKLIRVEPAKCVGCKSCELACSFRHRGEFAPSKARIVNEVFLEEAKFITVTCMQCDDPWCLKACPKGAIAKDAASGVVA
VDELKCVGCRTCVSACPFGMIKYLPETRKADKCTLCAPDVPECVIFCPTHCLTFAEEDAPLRAKVLKFVQTVKDGQMEV

Specific function: Unknown

COG id: COG1142

COG function: function code C; Fe-S-cluster-containing hydrogenase components 2

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI87082179, Length=167, Percent_Identity=37.7245508982036, Blast_Score=93, Evalue=8e-21,
Organism=Escherichia coli, GI1787872, Length=151, Percent_Identity=37.7483443708609, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1787122, Length=160, Percent_Identity=36.875, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI2367345, Length=140, Percent_Identity=37.1428571428571, Blast_Score=85, Evalue=2e-18,
Organism=Escherichia coli, GI1789067, Length=162, Percent_Identity=33.9506172839506, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1787963, Length=149, Percent_Identity=30.8724832214765, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI226510944, Length=164, Percent_Identity=31.7073170731707, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI87082180, Length=157, Percent_Identity=33.7579617834395, Blast_Score=81, Evalue=4e-17,
Organism=Escherichia coli, GI1790326, Length=168, Percent_Identity=33.9285714285714, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1788811, Length=151, Percent_Identity=34.4370860927152, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI2367245, Length=141, Percent_Identity=33.3333333333333, Blast_Score=78, Evalue=3e-16,
Organism=Escherichia coli, GI1787749, Length=159, Percent_Identity=34.5911949685535, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI1787740, Length=68, Percent_Identity=39.7058823529412, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1789079, Length=103, Percent_Identity=35.9223300970874, Blast_Score=67, Evalue=8e-13,
Organism=Escherichia coli, GI1787478, Length=68, Percent_Identity=38.2352941176471, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI87082114, Length=160, Percent_Identity=29.375, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1789370, Length=162, Percent_Identity=28.3950617283951, Blast_Score=62, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: PF00037 Fer4 [H]

EC number: NA

Molecular weight: Translated: 17430; Mature: 17430

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

10.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
13.2 %Cys+Met (Translated Protein)
10.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
13.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKLIRVEPAKCVGCKSCELACSFRHRGEFAPSKARIVNEVFLEEAKFITVTCMQCDDPW
CCCCCCCCCCHHCCCCCCHHEECHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCH
CLKACPKGAIAKDAASGVVAVDELKCVGCRTCVSACPFGMIKYLPETRKADKCTLCAPDV
HHHHCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCEEECCCCC
PECVIFCPTHCLTFAEEDAPLRAKVLKFVQTVKDGQMEV
CCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MQKLIRVEPAKCVGCKSCELACSFRHRGEFAPSKARIVNEVFLEEAKFITVTCMQCDDPW
CCCCCCCCCCHHCCCCCCHHEECHHHCCCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCH
CLKACPKGAIAKDAASGVVAVDELKCVGCRTCVSACPFGMIKYLPETRKADKCTLCAPDV
HHHHCCCCCCCHHHCCCEEEEHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCEEECCCCC
PECVIFCPTHCLTFAEEDAPLRAKVLKFVQTVKDGQMEV
CCEEEECCHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]