Click here to switch to the map view.

The map label for this gene is bphB [H]

Identifier: 39995928

GI number: 39995928

Start: 882167

End: 884356

Strand: Reverse

Name: bphB [H]

Synonym: GSU0822

Alternate gene names: 39995928

Gene position: 884356-882167 (Counterclockwise)

Preceding gene: 39995939

Following gene: 39995927

Centisome position: 23.19

GC content: 62.88

Gene sequence:

>2190_bases
ATGAAACTCAGGACAAAACTCATTATTCTGGTGTCGATTCTCGTAATCATCCTGATGGTGGTGACCTCGAGGATCACGCT
GGGCTACCTGGAGCGGCACCTCCACGACTCCATCGCCGCCCAGCAGACCGCCACCGTCGTCCACGTGGCCACGGACATCG
ACAGCACCCTCCGCTCCATGCTGGAGTTGCTGACGGCAAGCGCCCGGGTCGTCCCGCCCGCAGCACTGGCCGACCCCTCG
GGCGCCAAGGCGTTTCTGGAAAGCCGGACCGGCCTGCGCACGCTGTTCAACAATCACCTCTTCGTCGTTGATGCCGCCGG
CAACCTCCTGGCAGAAGTGACCAACCAGGAAGTCCGACGGGTGGAAAACTTCTCCGGTCACGCCTTCTTCAACAAAGCCA
GGGCAACCCGCAAGCCGCTCATCTCCGAGCTGACCACCTGCTGCACCGGCACCGCCAACTTGAGGGAAATCGTCTTTATC
AGCCCCATCCTCGGGAAAAACGGATCATTCAAGGGAGCCTTGCTGGGGGGAATTGACCTGAGCGAGGAAAACGCCCTGAG
CCGGTTCGGCCGGATCACCGTGGGCAACAAGGGGTTCATCCGCATCATTGACCGCAACCATATGGTACTGATCCATGCGG
AACGGGAGCACACCCTGATCAAGGCGGTTCCTGAAGTTGCGCGCCTGGCCGACGCCGCCCGGGAGGGCTACGTGGGCACC
CGCGAAACAAAGGGGCGATACGGCGACATCCTTCTGACATCGGTAGCGAAGCTCGGCAGCAAGGATTGGGTCGTGGCGGC
GAGCTATCCGCTCACAGTGGCCTACGAGCCCGTGAAGGTGGTACGCCGGCTGTTCATCATCAGTACCGTGGTCGCCATCC
TCGGTGTTCTGGTAGTGGTCTCGCTCTCCATGCAGTACCTGACCCGCCCCATTCTGGCGCTGGAGCGGCACATCAACGAA
CTGAGCGGCAAAAAAGGCAAGGAACGGCTGGTGCCGGTATCGAACGAGGACGAGTTGAGCCGGCTCACCGAAACCTTCAA
CACTATGCTTGCGGAGATCGACCGGCAAACCGAGAGCCTCAGGGAGAGCGAGGACCGTTTCCGGGGGGCTTTCGAGCAGG
CGGCGGTGGGCATGGCCATCATCGACCGCGAAGGGCTGCTGCTCAGGACAAACCGGCGCTTCTGCGACATTACCGGTCGC
CATGACGAGGATCTGGCGGGGCTCGACTGCCTTACCCTGGTGCACCCGGAGGACCGCAACGCCACCCGGGAGATCATGCC
GACCATGGCCGCCACTGAAGGGGAGCCGTTGACGCGTGAGCTCCGGTTCACCCATGGCACGGGCCGGACCGTCTGGGCAA
ATACCGCGTTTTCGCCGGTCCGGGGGAGGAGTGGCACCGACGATTCCTTCATAATGGTGGTGGAGGATGTCACCGAGCGC
AAGCGTGCCGAAGAGGAAATCCTGCGGTTGAACTCCGACCTGGAACAGCGGGTGGCGGATCGTACCGCCGCACTGGAGAG
CGCCAACCGGGAGTTGGAGGCATTCAGCTACACTGTCTCCCACGACCTGAAGGCCCCGGCCCGCCATATCTCCGGGATCG
TCGACATAGTGCTGGAAGATTGGGGTGGCTGCATGGAGCCTGCGCACCGCGAGTTGATGGAACGTGTGGCCGCGGCAGCC
GGCAGGATGCAGTCCATGATCGACGGATTGCTGGAACTGAGCCGCGTTGGCAGCGATGAACTGCGGCGCCAGGAGGTTCG
CCCGGCCCACCTGGCCCGGGAGATCTGCATCGAGCTGGCCGCGGCAGAGCCGGCGCGGCAGGTGGACTGGAGCGTAAAGG
ATGTGCCGCCGGCCAATGCCGATCCCGAACTCCTCATGACCGTGCTGGAAAATCTCCTGGGCAACGCCTGGAAGTATACC
TCGCGAAACGAACGGGCTGAGGTGGAATTCGGCTGCGAATACTGTTCGGGAAAAAACATGTACTACGTAAAGGACAACGG
CGCCGGGTTCGACATACGCGAGGCCCAGCGGCTGTTCGCCCCCTTCCAGCGCTTCCATCCGGCATCCGAGTTCGAAGGAA
ACGGCATCGGGCTCGCCACGGTCGCCAGGATCATCCATCGCCACGGCGGCACCATCCGCGCCGAGTCGGCCCCCGGCCGG
GGAGCCACCTTCTATTTCTCCCTCGACTGA

Upstream 100 bases:

>100_bases
TGAATTTTGAATTGGATTTTCGGGAATCCGGCCAGCAGGGCAGAGACAGGATACGCCGCATGCCCGTCACCGGCGCGGTC
CCACCGATAATCACGCCACC

Downstream 100 bases:

>100_bases
TACCCCGTCTCCAGCCGAATGTGCCATTCCGGCCGTCACGTCCCCACGGCTCCTGTCGCCGCCTTGCCGGCATGCGCCAC
GCAGGGATGGGCCATCCGCT

Product: sensory box histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 729; Mature: 729

Protein sequence:

>729_residues
MKLRTKLIILVSILVIILMVVTSRITLGYLERHLHDSIAAQQTATVVHVATDIDSTLRSMLELLTASARVVPPAALADPS
GAKAFLESRTGLRTLFNNHLFVVDAAGNLLAEVTNQEVRRVENFSGHAFFNKARATRKPLISELTTCCTGTANLREIVFI
SPILGKNGSFKGALLGGIDLSEENALSRFGRITVGNKGFIRIIDRNHMVLIHAEREHTLIKAVPEVARLADAAREGYVGT
RETKGRYGDILLTSVAKLGSKDWVVAASYPLTVAYEPVKVVRRLFIISTVVAILGVLVVVSLSMQYLTRPILALERHINE
LSGKKGKERLVPVSNEDELSRLTETFNTMLAEIDRQTESLRESEDRFRGAFEQAAVGMAIIDREGLLLRTNRRFCDITGR
HDEDLAGLDCLTLVHPEDRNATREIMPTMAATEGEPLTRELRFTHGTGRTVWANTAFSPVRGRSGTDDSFIMVVEDVTER
KRAEEEILRLNSDLEQRVADRTAALESANRELEAFSYTVSHDLKAPARHISGIVDIVLEDWGGCMEPAHRELMERVAAAA
GRMQSMIDGLLELSRVGSDELRRQEVRPAHLAREICIELAAAEPARQVDWSVKDVPPANADPELLMTVLENLLGNAWKYT
SRNERAEVEFGCEYCSGKNMYYVKDNGAGFDIREAQRLFAPFQRFHPASEFEGNGIGLATVARIIHRHGGTIRAESAPGR
GATFYFSLD

Sequences:

>Translated_729_residues
MKLRTKLIILVSILVIILMVVTSRITLGYLERHLHDSIAAQQTATVVHVATDIDSTLRSMLELLTASARVVPPAALADPS
GAKAFLESRTGLRTLFNNHLFVVDAAGNLLAEVTNQEVRRVENFSGHAFFNKARATRKPLISELTTCCTGTANLREIVFI
SPILGKNGSFKGALLGGIDLSEENALSRFGRITVGNKGFIRIIDRNHMVLIHAEREHTLIKAVPEVARLADAAREGYVGT
RETKGRYGDILLTSVAKLGSKDWVVAASYPLTVAYEPVKVVRRLFIISTVVAILGVLVVVSLSMQYLTRPILALERHINE
LSGKKGKERLVPVSNEDELSRLTETFNTMLAEIDRQTESLRESEDRFRGAFEQAAVGMAIIDREGLLLRTNRRFCDITGR
HDEDLAGLDCLTLVHPEDRNATREIMPTMAATEGEPLTRELRFTHGTGRTVWANTAFSPVRGRSGTDDSFIMVVEDVTER
KRAEEEILRLNSDLEQRVADRTAALESANRELEAFSYTVSHDLKAPARHISGIVDIVLEDWGGCMEPAHRELMERVAAAA
GRMQSMIDGLLELSRVGSDELRRQEVRPAHLAREICIELAAAEPARQVDWSVKDVPPANADPELLMTVLENLLGNAWKYT
SRNERAEVEFGCEYCSGKNMYYVKDNGAGFDIREAQRLFAPFQRFHPASEFEGNGIGLATVARIIHRHGGTIRAESAPGR
GATFYFSLD
>Mature_729_residues
MKLRTKLIILVSILVIILMVVTSRITLGYLERHLHDSIAAQQTATVVHVATDIDSTLRSMLELLTASARVVPPAALADPS
GAKAFLESRTGLRTLFNNHLFVVDAAGNLLAEVTNQEVRRVENFSGHAFFNKARATRKPLISELTTCCTGTANLREIVFI
SPILGKNGSFKGALLGGIDLSEENALSRFGRITVGNKGFIRIIDRNHMVLIHAEREHTLIKAVPEVARLADAAREGYVGT
RETKGRYGDILLTSVAKLGSKDWVVAASYPLTVAYEPVKVVRRLFIISTVVAILGVLVVVSLSMQYLTRPILALERHINE
LSGKKGKERLVPVSNEDELSRLTETFNTMLAEIDRQTESLRESEDRFRGAFEQAAVGMAIIDREGLLLRTNRRFCDITGR
HDEDLAGLDCLTLVHPEDRNATREIMPTMAATEGEPLTRELRFTHGTGRTVWANTAFSPVRGRSGTDDSFIMVVEDVTER
KRAEEEILRLNSDLEQRVADRTAALESANRELEAFSYTVSHDLKAPARHISGIVDIVLEDWGGCMEPAHRELMERVAAAA
GRMQSMIDGLLELSRVGSDELRRQEVRPAHLAREICIELAAAEPARQVDWSVKDVPPANADPELLMTVLENLLGNAWKYT
SRNERAEVEFGCEYCSGKNMYYVKDNGAGFDIREAQRLFAPFQRFHPASEFEGNGIGLATVARIIHRHGGTIRAESAPGR
GATFYFSLD

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG0642

COG function: function code T; Signal transduction histidine kinase

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=396, Percent_Identity=27.7777777777778, Blast_Score=108, Evalue=9e-25,
Organism=Escherichia coli, GI1788381, Length=202, Percent_Identity=32.1782178217822, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI145693157, Length=295, Percent_Identity=28.4745762711864, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI48994928, Length=485, Percent_Identity=23.2989690721649, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1789149, Length=258, Percent_Identity=24.8062015503876, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI1786912, Length=270, Percent_Identity=28.8888888888889, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1790436, Length=223, Percent_Identity=29.1479820627803, Blast_Score=69, Evalue=2e-12,
Organism=Escherichia coli, GI1788713, Length=224, Percent_Identity=24.1071428571429, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1790346, Length=208, Percent_Identity=28.8461538461538, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 80788; Mature: 80788

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS50885 HAMP ; PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLRTKLIILVSILVIILMVVTSRITLGYLERHLHDSIAAQQTATVVHVATDIDSTLRSM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHH
LELLTASARVVPPAALADPSGAKAFLESRTGLRTLFNNHLFVVDAAGNLLAEVTNQEVRR
HHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
VENFSGHAFFNKARATRKPLISELTTCCTGTANLREIVFISPILGKNGSFKGALLGGIDL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCEEEEECCCC
SEENALSRFGRITVGNKGFIRIIDRNHMVLIHAEREHTLIKAVPEVARLADAAREGYVGT
CHHHHHHHHCCEEECCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
RETKGRYGDILLTSVAKLGSKDWVVAASYPLTVAYEPVKVVRRLFIISTVVAILGVLVVV
CCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
SLSMQYLTRPILALERHINELSGKKGKERLVPVSNEDELSRLTETFNTMLAEIDRQTESL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RESEDRFRGAFEQAAVGMAIIDREGLLLRTNRRFCDITGRHDEDLAGLDCLTLVHPEDRN
HHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCEEEECCCCCCCCCCCCEEEEECCCCCC
ATREIMPTMAATEGEPLTRELRFTHGTGRTVWANTAFSPVRGRSGTDDSFIMVVEDVTER
CHHHHHHHHHCCCCCCCHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEHHHHHH
KRAEEEILRLNSDLEQRVADRTAALESANRELEAFSYTVSHDLKAPARHISGIVDIVLED
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHEEEHHHCCCCHHHHHHHHHHHHHHH
WGGCMEPAHRELMERVAAAAGRMQSMIDGLLELSRVGSDELRRQEVRPAHLAREICIELA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHH
AAEPARQVDWSVKDVPPANADPELLMTVLENLLGNAWKYTSRNERAEVEFGCEYCSGKNM
CCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCEEECCHHCCCCCE
YYVKDNGAGFDIREAQRLFAPFQRFHPASEFEGNGIGLATVARIIHRHGGTIRAESAPGR
EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCC
GATFYFSLD
CEEEEEEEC
>Mature Secondary Structure
MKLRTKLIILVSILVIILMVVTSRITLGYLERHLHDSIAAQQTATVVHVATDIDSTLRSM
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHHHHHHHHH
LELLTASARVVPPAALADPSGAKAFLESRTGLRTLFNNHLFVVDAAGNLLAEVTNQEVRR
HHHHHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHH
VENFSGHAFFNKARATRKPLISELTTCCTGTANLREIVFISPILGKNGSFKGALLGGIDL
HHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCEEEEECCCC
SEENALSRFGRITVGNKGFIRIIDRNHMVLIHAEREHTLIKAVPEVARLADAAREGYVGT
CHHHHHHHHCCEEECCCCEEEEEECCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
RETKGRYGDILLTSVAKLGSKDWVVAASYPLTVAYEPVKVVRRLFIISTVVAILGVLVVV
CCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
SLSMQYLTRPILALERHINELSGKKGKERLVPVSNEDELSRLTETFNTMLAEIDRQTESL
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
RESEDRFRGAFEQAAVGMAIIDREGLLLRTNRRFCDITGRHDEDLAGLDCLTLVHPEDRN
HHHHHHHHHHHHHHHHCCEEECCCCEEEECCCCEEEECCCCCCCCCCCCEEEEECCCCCC
ATREIMPTMAATEGEPLTRELRFTHGTGRTVWANTAFSPVRGRSGTDDSFIMVVEDVTER
CHHHHHHHHHCCCCCCCHHHEEEECCCCCEEEECCCCCCCCCCCCCCCCEEEEEHHHHHH
KRAEEEILRLNSDLEQRVADRTAALESANRELEAFSYTVSHDLKAPARHISGIVDIVLED
HHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHEEEHHHCCCCHHHHHHHHHHHHHHH
WGGCMEPAHRELMERVAAAAGRMQSMIDGLLELSRVGSDELRRQEVRPAHLAREICIELA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHH
AAEPARQVDWSVKDVPPANADPELLMTVLENLLGNAWKYTSRNERAEVEFGCEYCSGKNM
CCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEECCCCCCCCCEEECCHHCCCCCE
YYVKDNGAGFDIREAQRLFAPFQRFHPASEFEGNGIGLATVARIIHRHGGTIRAESAPGR
EEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCC
GATFYFSLD
CEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]