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The map label for this gene is rarD [C]

Identifier: 39995875

GI number: 39995875

Start: 824914

End: 825825

Strand: Reverse

Name: rarD [C]

Synonym: GSU0769

Alternate gene names: 39995875

Gene position: 825825-824914 (Counterclockwise)

Preceding gene: 39995881

Following gene: 39995872

Centisome position: 21.65

GC content: 67.98

Gene sequence:

>912_bases
ATGACCAATCCGCCGGACCACGAGGCGCGGGAGGCCCGCACCGGTGTGATCTTCGGCCTCGCCGCCTACCTCCTCTGGGG
GTTCTTTCCCATCTACTTCAAAGCCTTGGCCGGCGTGACCCCGCTGGAGGTCCTGTCCCACCGGATCGCCTGGTCGGTGG
CGACGCTGGCCGTGATGCTGACCGTGGCCCGCCGGTGGGACGGGGTCCGGGCCGCCTTCAGCCAGCCCCGCACCCTGATG
ACCCTCTGCGCCACCACACTCCTGATCGCCGTCAACTGGCTGGTCTTCATCTATGCCGTGGGCGCGGGCAAGGTGCTCCA
GTCGAGCCTCGGCTACTTCATCAACCCCCTGGTGTCGGCCTTCCTGGGGGTGGTCTTCCTGCACGAGCGGCTCAGCCCCA
AGCAGAAAGCGAGCTTCATCCTGGCCGCCGCCGGGGTGGCGATCCTCACGCTCCGGCACGGCGAGTTCCCCTGGATCGCC
CTGTCCCTGGGACTTTCCTTCGGCCTCTACGGCCTGCTGCGCAAAAAGGCGCCCGTGGACTCCCTGGCCGGTCTCACCGT
GGAGACCCTGCTCCTGTTCCCGCTCGCCCTCGGCTATCTCGGCTGGCTGGCGTACCAGGGAAAGAGCGCCTTCGTCTCCG
GGCCCACCCACATCACCGTCCTGCTCGCCTGCGCCGGGGTCCTCACCTCCACCCCCCTGATCTGGTTCGCGGCGGCCACC
AAGCGGCTGCGCCTCGCCACGGTGGGGCTGATGCAATACGTGGTGCCCACGCTTCACTTCGTGCTGGCGGTCTTCGCCTT
CGGCGAGACGTTCACCCCCACCCACCTGGCAAGCTTCGCCCTGATCTGGACGGGGCTCGTCCTCTACACCTACGACGCGG
CAAAACTCATCTTCGGCAACGGGGGGCGCTGA

Upstream 100 bases:

>100_bases
CTTCGGGCTTTCATGCCGGCATCCGCCTCGTGTATCATGGGAGCGGCCAATGAAGGAACTGGTTCTATCGCCGGCCCGCA
CGCCCGGCCAGGAGGCAGCC

Downstream 100 bases:

>100_bases
GCCCCCCCGTCCGTCAGACAACCTTTCCGATCAACCAGTAACAAAGCATCCCCACCACCACGGTGAGGCCCAGGGAGCGG
GTTTTCAGCGCCACCGCAAA

Product: rarD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MTNPPDHEAREARTGVIFGLAAYLLWGFFPIYFKALAGVTPLEVLSHRIAWSVATLAVMLTVARRWDGVRAAFSQPRTLM
TLCATTLLIAVNWLVFIYAVGAGKVLQSSLGYFINPLVSAFLGVVFLHERLSPKQKASFILAAAGVAILTLRHGEFPWIA
LSLGLSFGLYGLLRKKAPVDSLAGLTVETLLLFPLALGYLGWLAYQGKSAFVSGPTHITVLLACAGVLTSTPLIWFAAAT
KRLRLATVGLMQYVVPTLHFVLAVFAFGETFTPTHLASFALIWTGLVLYTYDAAKLIFGNGGR

Sequences:

>Translated_303_residues
MTNPPDHEAREARTGVIFGLAAYLLWGFFPIYFKALAGVTPLEVLSHRIAWSVATLAVMLTVARRWDGVRAAFSQPRTLM
TLCATTLLIAVNWLVFIYAVGAGKVLQSSLGYFINPLVSAFLGVVFLHERLSPKQKASFILAAAGVAILTLRHGEFPWIA
LSLGLSFGLYGLLRKKAPVDSLAGLTVETLLLFPLALGYLGWLAYQGKSAFVSGPTHITVLLACAGVLTSTPLIWFAAAT
KRLRLATVGLMQYVVPTLHFVLAVFAFGETFTPTHLASFALIWTGLVLYTYDAAKLIFGNGGR
>Mature_302_residues
TNPPDHEAREARTGVIFGLAAYLLWGFFPIYFKALAGVTPLEVLSHRIAWSVATLAVMLTVARRWDGVRAAFSQPRTLMT
LCATTLLIAVNWLVFIYAVGAGKVLQSSLGYFINPLVSAFLGVVFLHERLSPKQKASFILAAAGVAILTLRHGEFPWIAL
SLGLSFGLYGLLRKKAPVDSLAGLTVETLLLFPLALGYLGWLAYQGKSAFVSGPTHITVLLACAGVLTSTPLIWFAAATK
RLRLATVGLMQYVVPTLHFVLAVFAFGETFTPTHLASFALIWTGLVLYTYDAAKLIFGNGGR

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=286, Percent_Identity=41.2587412587413, Blast_Score=225, Evalue=3e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32805; Mature: 32674

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNPPDHEAREARTGVIFGLAAYLLWGFFPIYFKALAGVTPLEVLSHRIAWSVATLAVML
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TVARRWDGVRAAFSQPRTLMTLCATTLLIAVNWLVFIYAVGAGKVLQSSLGYFINPLVSA
HHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FLGVVFLHERLSPKQKASFILAAAGVAILTLRHGEFPWIALSLGLSFGLYGLLRKKAPVD
HHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHH
SLAGLTVETLLLFPLALGYLGWLAYQGKSAFVSGPTHITVLLACAGVLTSTPLIWFAAAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHCCCHHHHHHHH
KRLRLATVGLMQYVVPTLHFVLAVFAFGETFTPTHLASFALIWTGLVLYTYDAAKLIFGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECC
GGR
CCC
>Mature Secondary Structure 
TNPPDHEAREARTGVIFGLAAYLLWGFFPIYFKALAGVTPLEVLSHRIAWSVATLAVML
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TVARRWDGVRAAFSQPRTLMTLCATTLLIAVNWLVFIYAVGAGKVLQSSLGYFINPLVSA
HHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FLGVVFLHERLSPKQKASFILAAAGVAILTLRHGEFPWIALSLGLSFGLYGLLRKKAPVD
HHHHHHHHHHCCHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHH
SLAGLTVETLLLFPLALGYLGWLAYQGKSAFVSGPTHITVLLACAGVLTSTPLIWFAAAT
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCHHHHHHHHHHHHHHCCCHHHHHHHH
KRLRLATVGLMQYVVPTLHFVLAVFAFGETFTPTHLASFALIWTGLVLYTYDAAKLIFGN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHEEECC
GGR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]