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The map label for this gene is bphB [H]

Identifier: 39995799

GI number: 39995799

Start: 732661

End: 734469

Strand: Direct

Name: bphB [H]

Synonym: GSU0693

Alternate gene names: 39995799

Gene position: 732661-734469 (Clockwise)

Preceding gene: 39995796

Following gene: 39995802

Centisome position: 19.21

GC content: 64.57

Gene sequence:

>1809_bases
ATGAATTCCGACCGCCTCGCCTTGATCCTGGAAACCGCCACCGACGGATTCTGGGATTGGGACCTGCGCGCTGACCGACT
TTTCCTGAGTGAAGGCTACCGCACCCTGATCGGCTACTCATCCGACGAAACCTTTATTGACAGCGTCTTTATCGAGGCAA
TCGTCCATCCCGACGATCGGCCCGCGTGCGTGCCGGTCATCAGAGACCTCATGGATGGGAGCCGCATCTCGGCCACCCTT
GAATACCGTATCCTGCGGGGTGACGGCGCCACCGTCTGGGTCCAGGCGCGGGGGACCGCCGTGGACCATGATGACGCCGG
TCGCCCGGCCCGGATGGTGGGGACCATCTTCGATATAACCGCACGCAAGCGGAACGAGGAACAACTCGTCCTGATGGGGG
CGGTGGTCGATGATGCCACCGATGAAATCTTCTGGGCGGACCGCCAGGGGCGCCTGGTGTATGTCAACCGGGCGGCCTGC
GAGAACCTCGGTTATTCCCGCGAAGAGCTCCTCTCCATGACCGTCAGCGACGTGGATCCCCTGGTCCCCTCCGACCGCTG
GCCCGTCATGTGGGAAACGGTGCGGCTCCAGGGTGGGTTCGTTATGGACTCGGTCCACCGGACCCGGGACGGCCGCGACA
TCCCCAAGGAGATTTCCGTCAGGTATGCGAGCATCGGTGGGCGGGAGATCGTCTACGGCTTTGCCCGTGATATCAGCGAG
CGGAAACGGGTGGAAGAAGCCCTGCGCACCAGTGAGCACCGGCTGCGGCTCATGGTGGAGCATCTGCCTGCAGGCGCCGC
CCACCGGGAGGGTGACCGGCTCCTGGTCAACCGGGCAGTGGAAGAGATAACCGGTTACCGGCGCCATGAACTGGACACCC
TCGACAAGTGGTTTTCTACCATCTACGGCGAGCAGGCCGCAGAGGTCCGCGCCGTCTACGAGGCGGATCGCGCGGCGGGG
ATGCGCGTCCCCCGCATCATGCCCGTCAGGCGCAAGGACGGCACGATCCGCCACCTGGAGTTCTTCGGTTACCAGTACGA
ATCGGGCGAGGTCTGGCTCCTGCACGACGTCACCGACCGTCGGGCCGTCGAGGAGGAAATCCGGCGGCTGAATGCCGACC
TGGAAGCGCGGGTCCGGGAGCGCACCGCCGACCTGGAGTCGTTCTGTCACTCGGTCTCCCATGACCTGCGGGCACCCCTG
CGGCACATCGCCGGCTATGCACGGATGCTCCAGGAGGACTACCGGGACCGTCTCGATGACACCGGCCGCCACTGCCTGTC
GCGCATCGGCCGGGCGGCGGTCAATATGGGTGAGCTGGTGGACGGGCTCCTGAGTCTGTCTCACATCTCACGGGAGGACA
TTGAGCGCCGTAATGTCAGCCTGAGCTCCATTGCGCGCTCGGTGGGCCGCGAATTGTCCGAACGGGAGCCGGACCGCAAG
GTGGAACTCGAGGTTGCCGACGGGATCAACGGTTGCGGTGACCCGCGCCTGCTCAGGATACTGTTCGAAAACCTCCTGGG
CAATGCCTGGAAGTTTACTGCACGTGTCGAGCGGCCCAAGGTCGAGTTCCGCATGGAGTCCCGCGATGGCAAAAATGTGT
ATGTCGTCCGCGACAACGGCGTTGGCTTCGATATGCGCTATGTTCACAAGCTCTTCGGTTCCTTCGAGCGGCTCCACGGC
CCCGAGGAATTCTCCGGCCCAGGCATGGGGCTGGCCATTGTCCGCCGGATCGTGGAACGCCACGGCGGCACGGTCCGGGC
CGAGAGCGAGATCGGACGGGGGGCCGCGTTCTCCTTCACTCTCGGCTGA

Upstream 100 bases:

>100_bases
ACCAGTAAACATTAAAATTGTTTACATTGTCGTCGCAATTCGGTTACATTTGCAAACTTATTCCATCCTGCCCTGATCAA
ATTCAAATCCGGAGCACTGA

Downstream 100 bases:

>100_bases
TTCCCCGTTCCACCAGTTCAGCCAGCTCTTCCAGGCTTGCCACCGCCAGATCGGTGAACTGGGGCCAGCGGAAGGCTCGG
GTCCGGTCCACGTGTACCGT

Product: sensory box histidine kinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 602; Mature: 602

Protein sequence:

>602_residues
MNSDRLALILETATDGFWDWDLRADRLFLSEGYRTLIGYSSDETFIDSVFIEAIVHPDDRPACVPVIRDLMDGSRISATL
EYRILRGDGATVWVQARGTAVDHDDAGRPARMVGTIFDITARKRNEEQLVLMGAVVDDATDEIFWADRQGRLVYVNRAAC
ENLGYSREELLSMTVSDVDPLVPSDRWPVMWETVRLQGGFVMDSVHRTRDGRDIPKEISVRYASIGGREIVYGFARDISE
RKRVEEALRTSEHRLRLMVEHLPAGAAHREGDRLLVNRAVEEITGYRRHELDTLDKWFSTIYGEQAAEVRAVYEADRAAG
MRVPRIMPVRRKDGTIRHLEFFGYQYESGEVWLLHDVTDRRAVEEEIRRLNADLEARVRERTADLESFCHSVSHDLRAPL
RHIAGYARMLQEDYRDRLDDTGRHCLSRIGRAAVNMGELVDGLLSLSHISREDIERRNVSLSSIARSVGRELSEREPDRK
VELEVADGINGCGDPRLLRILFENLLGNAWKFTARVERPKVEFRMESRDGKNVYVVRDNGVGFDMRYVHKLFGSFERLHG
PEEFSGPGMGLAIVRRIVERHGGTVRAESEIGRGAAFSFTLG

Sequences:

>Translated_602_residues
MNSDRLALILETATDGFWDWDLRADRLFLSEGYRTLIGYSSDETFIDSVFIEAIVHPDDRPACVPVIRDLMDGSRISATL
EYRILRGDGATVWVQARGTAVDHDDAGRPARMVGTIFDITARKRNEEQLVLMGAVVDDATDEIFWADRQGRLVYVNRAAC
ENLGYSREELLSMTVSDVDPLVPSDRWPVMWETVRLQGGFVMDSVHRTRDGRDIPKEISVRYASIGGREIVYGFARDISE
RKRVEEALRTSEHRLRLMVEHLPAGAAHREGDRLLVNRAVEEITGYRRHELDTLDKWFSTIYGEQAAEVRAVYEADRAAG
MRVPRIMPVRRKDGTIRHLEFFGYQYESGEVWLLHDVTDRRAVEEEIRRLNADLEARVRERTADLESFCHSVSHDLRAPL
RHIAGYARMLQEDYRDRLDDTGRHCLSRIGRAAVNMGELVDGLLSLSHISREDIERRNVSLSSIARSVGRELSEREPDRK
VELEVADGINGCGDPRLLRILFENLLGNAWKFTARVERPKVEFRMESRDGKNVYVVRDNGVGFDMRYVHKLFGSFERLHG
PEEFSGPGMGLAIVRRIVERHGGTVRAESEIGRGAAFSFTLG
>Mature_602_residues
MNSDRLALILETATDGFWDWDLRADRLFLSEGYRTLIGYSSDETFIDSVFIEAIVHPDDRPACVPVIRDLMDGSRISATL
EYRILRGDGATVWVQARGTAVDHDDAGRPARMVGTIFDITARKRNEEQLVLMGAVVDDATDEIFWADRQGRLVYVNRAAC
ENLGYSREELLSMTVSDVDPLVPSDRWPVMWETVRLQGGFVMDSVHRTRDGRDIPKEISVRYASIGGREIVYGFARDISE
RKRVEEALRTSEHRLRLMVEHLPAGAAHREGDRLLVNRAVEEITGYRRHELDTLDKWFSTIYGEQAAEVRAVYEADRAAG
MRVPRIMPVRRKDGTIRHLEFFGYQYESGEVWLLHDVTDRRAVEEEIRRLNADLEARVRERTADLESFCHSVSHDLRAPL
RHIAGYARMLQEDYRDRLDDTGRHCLSRIGRAAVNMGELVDGLLSLSHISREDIERRNVSLSSIARSVGRELSEREPDRK
VELEVADGINGCGDPRLLRILFENLLGNAWKFTARVERPKVEFRMESRDGKNVYVVRDNGVGFDMRYVHKLFGSFERLHG
PEEFSGPGMGLAIVRRIVERHGGTVRAESEIGRGAAFSFTLG

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG4251

COG function: function code T; Bacteriophytochrome (light-regulated signal transduction histidine kinase)

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

Organism=Escherichia coli, GI1789149, Length=262, Percent_Identity=30.1526717557252, Blast_Score=91, Evalue=2e-19,
Organism=Escherichia coli, GI48994928, Length=424, Percent_Identity=24.5283018867925, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1788549, Length=377, Percent_Identity=25.4641909814324, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI1786912, Length=227, Percent_Identity=29.9559471365639, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1786600, Length=227, Percent_Identity=29.9559471365639, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1786783, Length=254, Percent_Identity=27.1653543307087, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI87081816, Length=270, Percent_Identity=27.4074074074074, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788393, Length=239, Percent_Identity=28.4518828451883, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 68646; Mature: 68646

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSDRLALILETATDGFWDWDLRADRLFLSEGYRTLIGYSSDETFIDSVFIEAIVHPDDR
CCCCEEEEEEEECCCCCEECCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
PACVPVIRDLMDGSRISATLEYRILRGDGATVWVQARGTAVDHDDAGRPARMVGTIFDIT
CCHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
ARKRNEEQLVLMGAVVDDATDEIFWADRQGRLVYVNRAACENLGYSREELLSMTVSDVDP
HCCCCCCEEEEEEEHHCCCCCCEEEECCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHCCC
LVPSDRWPVMWETVRLQGGFVMDSVHRTRDGRDIPKEISVRYASIGGREIVYGFARDISE
CCCCCCCCEEEEEEEECCCEEEHHHHHCCCCCCCCHHHHEEEECCCCHHHHHHHHHHHHH
RKRVEEALRTSEHRLRLMVEHLPAGAAHREGDRLLVNRAVEEITGYRRHELDTLDKWFST
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
IYGEQAAEVRAVYEADRAAGMRVPRIMPVRRKDGTIRHLEFFGYQYESGEVWLLHDVTDR
HHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECEEECCCCEEEEECCHHH
RAVEEEIRRLNADLEARVRERTADLESFCHSVSHDLRAPLRHIAGYARMLQEDYRDRLDD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGRHCLSRIGRAAVNMGELVDGLLSLSHISREDIERRNVSLSSIARSVGRELSEREPDRK
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE
VELEVADGINGCGDPRLLRILFENLLGNAWKFTARVERPKVEFRMESRDGKNVYVVRDNG
EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCC
VGFDMRYVHKLFGSFERLHGPEEFSGPGMGLAIVRRIVERHGGTVRAESEIGRGAAFSFT
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHCCCCEEEEEE
LG
CC
>Mature Secondary Structure
MNSDRLALILETATDGFWDWDLRADRLFLSEGYRTLIGYSSDETFIDSVFIEAIVHPDDR
CCCCEEEEEEEECCCCCEECCCCCCCHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCCC
PACVPVIRDLMDGSRISATLEYRILRGDGATVWVQARGTAVDHDDAGRPARMVGTIFDIT
CCHHHHHHHHHCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH
ARKRNEEQLVLMGAVVDDATDEIFWADRQGRLVYVNRAACENLGYSREELLSMTVSDVDP
HCCCCCCEEEEEEEHHCCCCCCEEEECCCCCEEEEEHHHHHHCCCCHHHHHHHHHHHCCC
LVPSDRWPVMWETVRLQGGFVMDSVHRTRDGRDIPKEISVRYASIGGREIVYGFARDISE
CCCCCCCCEEEEEEEECCCEEEHHHHHCCCCCCCCHHHHEEEECCCCHHHHHHHHHHHHH
RKRVEEALRTSEHRLRLMVEHLPAGAAHREGDRLLVNRAVEEITGYRRHELDTLDKWFST
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHH
IYGEQAAEVRAVYEADRAAGMRVPRIMPVRRKDGTIRHLEFFGYQYESGEVWLLHDVTDR
HHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECEEECCCCEEEEECCHHH
RAVEEEIRRLNADLEARVRERTADLESFCHSVSHDLRAPLRHIAGYARMLQEDYRDRLDD
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TGRHCLSRIGRAAVNMGELVDGLLSLSHISREDIERRNVSLSSIARSVGRELSEREPDRK
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE
VELEVADGINGCGDPRLLRILFENLLGNAWKFTARVERPKVEFRMESRDGKNVYVVRDNG
EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCCCEEEEEECCC
VGFDMRYVHKLFGSFERLHGPEEFSGPGMGLAIVRRIVERHGGTVRAESEIGRGAAFSFT
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEHHHCCCCEEEEEE
LG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]