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The map label for this gene is yfiO [C]

Identifier: 39995608

GI number: 39995608

Start: 534968

End: 535732

Strand: Direct

Name: yfiO [C]

Synonym: GSU0501

Alternate gene names: 39995608

Gene position: 534968-535732 (Clockwise)

Preceding gene: 39995607

Following gene: 39995609

Centisome position: 14.03

GC content: 57.52

Gene sequence:

>765_bases
ATGAACGTGTCCAGGCTCTGCTCCCTCTACCCGACCCTGCTTATCCCGCTGCTCTTTGTGGCCGGCTGCGGGCTTTTCGC
CTCTTCTACGGCTCCGGTGAGCCGCAGCCCCGAGTCCATGGCCCGGGAGGCTGAGGAGTTTCAGAGTTCCCGTCGATTCG
AGGACGCCATAGCCCAGTGGCGCAAGGTGAAGGAAAGTTACATTTCCCCTGAACTGATAACCCTCGCCGAGATCAAGATC
GCCGACGCCCAGTTCGACAGCGGCAACTACATTGAAGCTGCCGCATCCTACGAAGAGTTCCGCAAACTTCATCCCAACCA
CGAGAAGTCGGCTTATGCACTTTACCGCCAAGGCCTGAGCTATTTCAACCAGATCCACGGATTCGACACCGACCAGACCC
CCGTATCCAACACGGTAACCATTTTCGAGTCGTTTTTGCGCCTCTATCCCCAGTCCGAGCATGCGGAAGAGGTGCGCAAC
AAGCTTGACGCGGCGCGCCAGAACCAGGTCCAGTACGAGATTTACGTGGGACAGTTCTATTACCGTACCGAAAAGTACAC
CTCCGCCATCAAGCGGCTGGAGGATGCCCTCAAGCGCTATCCCCGTTCTCCGCTCCACGACGAGACCCTCTACTACCTGG
GCAAGGCCTATATCAAAGCTGGCGACAAAGCCGGCGGACGTGAGGCGTTCCAGCGGCTTTTCAATGAGTTCCGCACGAGT
AAGTACGTGGACGAAGCCCGCTCGTTCCTGGACAAGAACTTCTGA

Upstream 100 bases:

>100_bases
CGGTGTGTAAAGTTCCCCCGGCTCCGGCTAGGGAACTTTACTTGACTTTGCCGGGTGATTTTTCTACTTTCATCAGTGAT
ATCCGACGGAAGGTGAGACC

Downstream 100 bases:

>100_bases
CATGAGACGCCTTGCGGCGCTGCTGTTCCTGCTTTCCCTTGCCGGTTGCGGCAGTGACCGGCGCGCCGTGGAAGAGGTCC
TGCGGCTTCGAGAGGAGGCT

Product: lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MNVSRLCSLYPTLLIPLLFVAGCGLFASSTAPVSRSPESMAREAEEFQSSRRFEDAIAQWRKVKESYISPELITLAEIKI
ADAQFDSGNYIEAAASYEEFRKLHPNHEKSAYALYRQGLSYFNQIHGFDTDQTPVSNTVTIFESFLRLYPQSEHAEEVRN
KLDAARQNQVQYEIYVGQFYYRTEKYTSAIKRLEDALKRYPRSPLHDETLYYLGKAYIKAGDKAGGREAFQRLFNEFRTS
KYVDEARSFLDKNF

Sequences:

>Translated_254_residues
MNVSRLCSLYPTLLIPLLFVAGCGLFASSTAPVSRSPESMAREAEEFQSSRRFEDAIAQWRKVKESYISPELITLAEIKI
ADAQFDSGNYIEAAASYEEFRKLHPNHEKSAYALYRQGLSYFNQIHGFDTDQTPVSNTVTIFESFLRLYPQSEHAEEVRN
KLDAARQNQVQYEIYVGQFYYRTEKYTSAIKRLEDALKRYPRSPLHDETLYYLGKAYIKAGDKAGGREAFQRLFNEFRTS
KYVDEARSFLDKNF
>Mature_254_residues
MNVSRLCSLYPTLLIPLLFVAGCGLFASSTAPVSRSPESMAREAEEFQSSRRFEDAIAQWRKVKESYISPELITLAEIKI
ADAQFDSGNYIEAAASYEEFRKLHPNHEKSAYALYRQGLSYFNQIHGFDTDQTPVSNTVTIFESFLRLYPQSEHAEEVRN
KLDAARQNQVQYEIYVGQFYYRTEKYTSAIKRLEDALKRYPRSPLHDETLYYLGKAYIKAGDKAGGREAFQRLFNEFRTS
KYVDEARSFLDKNF

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29398; Mature: 29398

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNVSRLCSLYPTLLIPLLFVAGCGLFASSTAPVSRSPESMAREAEEFQSSRRFEDAIAQW
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RKVKESYISPELITLAEIKIADAQFDSGNYIEAAASYEEFRKLHPNHEKSAYALYRQGLS
HHHHHHHCCCHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
YFNQIHGFDTDQTPVSNTVTIFESFLRLYPQSEHAEEVRNKLDAARQNQVQYEIYVGQFY
HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEEHHHH
YRTEKYTSAIKRLEDALKRYPRSPLHDETLYYLGKAYIKAGDKAGGREAFQRLFNEFRTS
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
KYVDEARSFLDKNF
HHHHHHHHHHHCCC
>Mature Secondary Structure
MNVSRLCSLYPTLLIPLLFVAGCGLFASSTAPVSRSPESMAREAEEFQSSRRFEDAIAQW
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
RKVKESYISPELITLAEIKIADAQFDSGNYIEAAASYEEFRKLHPNHEKSAYALYRQGLS
HHHHHHHCCCHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
YFNQIHGFDTDQTPVSNTVTIFESFLRLYPQSEHAEEVRNKLDAARQNQVQYEIYVGQFY
HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEEEHHHH
YRTEKYTSAIKRLEDALKRYPRSPLHDETLYYLGKAYIKAGDKAGGREAFQRLFNEFRTS
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHH
KYVDEARSFLDKNF
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12533478 [H]