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The map label for this gene is cofH [H]

Identifier: 39995550

GI number: 39995550

Start: 473790

End: 474854

Strand: Direct

Name: cofH [H]

Synonym: GSU0442

Alternate gene names: 39995550

Gene position: 473790-474854 (Clockwise)

Preceding gene: 39995549

Following gene: 39995551

Centisome position: 12.42

GC content: 65.73

Gene sequence:

>1065_bases
ATGCCGATACGTGCCATGGAAAAAGCAACCGCCGGGAAACTCCTCACGCGGGCCGAAGCGCTCAGCCTCCTGACGGAGGG
GGACCTCCTCGCCCTGGGCCGGCTCGCCGATGCTGTCCGCCGGAGGATGCACCCGGAAAACCTGGTTACCTTCGTGGTGG
ACCGCAACGTCAACTACACCAACGTCTGCGAGTCCAAGTGCAAATTTTGTGCGTTCTACCGCGACGAGGCAGCTCCCGAC
GCCTATCTGCTGGCCGAGGAGGCCATCTTCGCCAAGATCGCCGAGCTGGTGGAACACGGCGGGACCCAGCTCCTCATGCA
GGGGGGGCTCCATCCCCAGTTGGGGATCGACTGGTTCGAGGACCTTTTTCGGGGGATCAAGGCCCGCTTTCCGCAGGTAC
AGAACCATTCACTCTCGCCGGCGGAGATCACTCAGATCGCCACGGTCTCGAAACTCACCATCCCGGAGACGGTGCGCCGG
CTCCGGGAGGCGGGGCTCGACTCCATTCCCGGCGGCGGCGCCGAGATCCTGGTGGACAGCGTGCGGCAGGAAATCTCGCC
CCGCAAGATCGGCTGGGAGGGCTGGGCCGCGGTGATGAGTGAGGCAGCCCGCCAGGGAATGGCCACCACGGCTACTATGA
TGTTCGGCAGCCGCGAGACCCCCGAGGATATCGTGGAGCACCTCTTCCGCGTCCGGGAGCTCCAGGCCGCCGGAGGGTCC
TTCACCGCCTTCATCCCCTGGACCTACCAGCCGGGCAACACCGAGCTCGGCGGCACGGGGGCCACCGGCGTGGAGTACCT
GAAGGTCCTGGCCCTGTCGCGGATCGTCCTCGACAACATTCCCAGCATCCAGGCCAGCTGGGTGACCCAGGGTGCAGCTA
TGGCCCAGGTGTCGCTCTTCTTCGGCGCCAATGACCTGGGCGGGACCATGCTGGAGGAGAACGTGGTGGCCGCGGCCGGC
TGCACCTTCCGCATGAGCCGCGAGGAGATGGTGGAGCTCATCCGTGAGGCCGGGTTCCGGGCTGCCCAGAGGACGACGCT
CTATTCGATAATCCGCGAGTATTGA

Upstream 100 bases:

>100_bases
CCCAGACCATGGGGCGCGACGAAATCGTCTCCCTGATCCGCACGGCCGGCCGGGTGCCGGTAGAGCGGGATACGCTGTAC
AACGAACTGCGGGTGTACTG

Downstream 100 bases:

>100_bases
CCTGAATAAGCAGTTGAAACACAGAGCAACAGAGCAAAATCTGGAAGAGCCTCCGTTCAAGTTCAACTTCGCCTCTTGAT
GGCATAAGGCAGAATGTTAC

Product: radical SAM protein

Products: NA

Alternate protein names: 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 2 [H]

Number of amino acids: Translated: 354; Mature: 353

Protein sequence:

>354_residues
MPIRAMEKATAGKLLTRAEALSLLTEGDLLALGRLADAVRRRMHPENLVTFVVDRNVNYTNVCESKCKFCAFYRDEAAPD
AYLLAEEAIFAKIAELVEHGGTQLLMQGGLHPQLGIDWFEDLFRGIKARFPQVQNHSLSPAEITQIATVSKLTIPETVRR
LREAGLDSIPGGGAEILVDSVRQEISPRKIGWEGWAAVMSEAARQGMATTATMMFGSRETPEDIVEHLFRVRELQAAGGS
FTAFIPWTYQPGNTELGGTGATGVEYLKVLALSRIVLDNIPSIQASWVTQGAAMAQVSLFFGANDLGGTMLEENVVAAAG
CTFRMSREEMVELIREAGFRAAQRTTLYSIIREY

Sequences:

>Translated_354_residues
MPIRAMEKATAGKLLTRAEALSLLTEGDLLALGRLADAVRRRMHPENLVTFVVDRNVNYTNVCESKCKFCAFYRDEAAPD
AYLLAEEAIFAKIAELVEHGGTQLLMQGGLHPQLGIDWFEDLFRGIKARFPQVQNHSLSPAEITQIATVSKLTIPETVRR
LREAGLDSIPGGGAEILVDSVRQEISPRKIGWEGWAAVMSEAARQGMATTATMMFGSRETPEDIVEHLFRVRELQAAGGS
FTAFIPWTYQPGNTELGGTGATGVEYLKVLALSRIVLDNIPSIQASWVTQGAAMAQVSLFFGANDLGGTMLEENVVAAAG
CTFRMSREEMVELIREAGFRAAQRTTLYSIIREY
>Mature_353_residues
PIRAMEKATAGKLLTRAEALSLLTEGDLLALGRLADAVRRRMHPENLVTFVVDRNVNYTNVCESKCKFCAFYRDEAAPDA
YLLAEEAIFAKIAELVEHGGTQLLMQGGLHPQLGIDWFEDLFRGIKARFPQVQNHSLSPAEITQIATVSKLTIPETVRRL
REAGLDSIPGGGAEILVDSVRQEISPRKIGWEGWAAVMSEAARQGMATTATMMFGSRETPEDIVEHLFRVRELQAAGGSF
TAFIPWTYQPGNTELGGTGATGVEYLKVLALSRIVLDNIPSIQASWVTQGAAMAQVSLFFGANDLGGTMLEENVVAAAGC
TFRMSREEMVELIREAGFRAAQRTTLYSIIREY

Specific function: Catalyzes the radical-mediated transfer of the hydroxybenzyl group from 4-hydroxyphenylpyruvate (HPP) to 5-amino- 6-ribitylamino-2,4(1H,3H)-pyrimidinedione to form 7,8-didemethyl- 8-hydroxy-5-deazariboflavin (FO) [H]

COG id: COG1060

COG function: function code HR; Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. CofH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR019940
- InterPro:   IPR006638
- InterPro:   IPR020050
- InterPro:   IPR005244
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 38832; Mature: 38701

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIRAMEKATAGKLLTRAEALSLLTEGDLLALGRLADAVRRRMHPENLVTFVVDRNVNYT
CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHH
NVCESKCKFCAFYRDEAAPDAYLLAEEAIFAKIAELVEHGGTQLLMQGGLHPQLGIDWFE
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHH
DLFRGIKARFPQVQNHSLSPAEITQIATVSKLTIPETVRRLREAGLDSIPGGGAEILVDS
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
VRQEISPRKIGWEGWAAVMSEAARQGMATTATMMFGSRETPEDIVEHLFRVRELQAAGGS
HHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
FTAFIPWTYQPGNTELGGTGATGVEYLKVLALSRIVLDNIPSIQASWVTQGAAMAQVSLF
EEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHE
FGANDLGGTMLEENVVAAAGCTFRMSREEMVELIREAGFRAAQRTTLYSIIREY
ECCCCCCCHHHHHCHHHHCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHC
>Mature Secondary Structure 
PIRAMEKATAGKLLTRAEALSLLTEGDLLALGRLADAVRRRMHPENLVTFVVDRNVNYT
CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHEEEEEECCCCHH
NVCESKCKFCAFYRDEAAPDAYLLAEEAIFAKIAELVEHGGTQLLMQGGLHPQLGIDWFE
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCHHHH
DLFRGIKARFPQVQNHSLSPAEITQIATVSKLTIPETVRRLREAGLDSIPGGGAEILVDS
HHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHH
VRQEISPRKIGWEGWAAVMSEAARQGMATTATMMFGSRETPEDIVEHLFRVRELQAAGGS
HHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCC
FTAFIPWTYQPGNTELGGTGATGVEYLKVLALSRIVLDNIPSIQASWVTQGAAMAQVSLF
EEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCHHHHHHHHE
FGANDLGGTMLEENVVAAAGCTFRMSREEMVELIREAGFRAAQRTTLYSIIREY
ECCCCCCCHHHHHCHHHHCCCEEECCHHHHHHHHHHHCCHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11930014 [H]