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The map label for this gene is dapB [H]

Identifier: 39995271

GI number: 39995271

Start: 178340

End: 179140

Strand: Direct

Name: dapB [H]

Synonym: GSU0160

Alternate gene names: 39995271

Gene position: 178340-179140 (Clockwise)

Preceding gene: 39995270

Following gene: 39995272

Centisome position: 4.68

GC content: 65.42

Gene sequence:

>801_bases
ATGACCAAGATAGCTGTCTGTGGCGCCGCCGGGCGTATGGGCCAGAGGATCATCGTTGCCGCCAGGGAGGCTGGCTGCAC
CATTTCCGGAGCCCTGGAGCGGCCGGGCCACGAGATGGTCGGGCAGGATGCCGGCCTCATCGCCGGCTGCGGCGCCTTGG
GCGTCGCCATTTCCGACGACCTCAACGCCGTGGTGGAAGGGTGCGACGTCCTCATCGACTTCACCACTCCCAAGGTTTCC
CTCAAGAACCTGGAGGTCTGCGCCCTCAAGAAAAAGTCCATCGTCATCGGCTCCACCGGTTTCACCCCCGAGGAGCGCGC
CCTGGCCGTGGAACTGGCCCGGGAGATCCCGGCGGTGCTGGCCCCCAACATGAGCGTCGGGGTCAACGTCTGCTTCAAGA
TTCTCAAGGACGTGGCCAAGACCCTGGGCGACGATTTCGACGTGGAGATCGTCGAACTGCACCACAACAAGAAAAAGGAC
GCCCCTAGCGGCACCGCCGTCCGCATGGGCGAGGTGGTGGCCGAGGCCCTGGGCCGCGACTACAACAAGGTGGCCACCTA
TCACCGCGAGGGAATCTGCGGCGAGCGGACCAAGGAAGAGATCGGCATGCAGACCGTGCGCGGCGGCGACATCGTCGGCG
AGCACACCGTCTACTTCATCGGCATGGGCGAGCGGATCGAGATCAGTCACCGGGCCATGACCCGCGACATGTTCTCCCGA
GGCTCCGTCCGGGCCGCCCAGTGGGTGGTGGGCAAGGCGCCGGGGTTGTACGACATGCAGGACGTTCTGGGGCTGAAGTA
G

Upstream 100 bases:

>100_bases
CCGCCTCCCGCTCTGCCCCATGTCCGAGGGGAACAAGGCGAAACTGACCGCCATCATGAAAGAGTACCAGCTGATTTAAC
GCGCGAACTGCGAGGTTGAT

Downstream 100 bases:

>100_bases
AAATGCCGCGTGTTGCCAATCTCGGCGTTGTCCGCGCCAGCGCGCGTGCGACGTAGCGCAGCTGCGTCTCCGCGCTCTTC
CGTGACGCCTTGACCTTGGC

Product: dihydrodipicolinate reductase

Products: NA

Alternate protein names: DHPR [H]

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MTKIAVCGAAGRMGQRIIVAAREAGCTISGALERPGHEMVGQDAGLIAGCGALGVAISDDLNAVVEGCDVLIDFTTPKVS
LKNLEVCALKKKSIVIGSTGFTPEERALAVELAREIPAVLAPNMSVGVNVCFKILKDVAKTLGDDFDVEIVELHHNKKKD
APSGTAVRMGEVVAEALGRDYNKVATYHREGICGERTKEEIGMQTVRGGDIVGEHTVYFIGMGERIEISHRAMTRDMFSR
GSVRAAQWVVGKAPGLYDMQDVLGLK

Sequences:

>Translated_266_residues
MTKIAVCGAAGRMGQRIIVAAREAGCTISGALERPGHEMVGQDAGLIAGCGALGVAISDDLNAVVEGCDVLIDFTTPKVS
LKNLEVCALKKKSIVIGSTGFTPEERALAVELAREIPAVLAPNMSVGVNVCFKILKDVAKTLGDDFDVEIVELHHNKKKD
APSGTAVRMGEVVAEALGRDYNKVATYHREGICGERTKEEIGMQTVRGGDIVGEHTVYFIGMGERIEISHRAMTRDMFSR
GSVRAAQWVVGKAPGLYDMQDVLGLK
>Mature_265_residues
TKIAVCGAAGRMGQRIIVAAREAGCTISGALERPGHEMVGQDAGLIAGCGALGVAISDDLNAVVEGCDVLIDFTTPKVSL
KNLEVCALKKKSIVIGSTGFTPEERALAVELAREIPAVLAPNMSVGVNVCFKILKDVAKTLGDDFDVEIVELHHNKKKDA
PSGTAVRMGEVVAEALGRDYNKVATYHREGICGERTKEEIGMQTVRGGDIVGEHTVYFIGMGERIEISHRAMTRDMFSRG
SVRAAQWVVGKAPGLYDMQDVLGLK

Specific function: Biosynthesis of diaminopimelate and lysine from aspartate semialdehyde; second step. [C]

COG id: COG0289

COG function: function code E; Dihydrodipicolinate reductase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dihydrodipicolinate reductase family [H]

Homologues:

Organism=Escherichia coli, GI1786214, Length=265, Percent_Identity=48.6792452830189, Blast_Score=245, Evalue=2e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022663
- InterPro:   IPR000846
- InterPro:   IPR022664
- InterPro:   IPR011770
- InterPro:   IPR016040 [H]

Pfam domain/function: PF05173 DapB_C; PF01113 DapB_N [H]

EC number: =1.3.1.26 [H]

Molecular weight: Translated: 28353; Mature: 28222

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS01298 DAPB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKIAVCGAAGRMGQRIIVAAREAGCTISGALERPGHEMVGQDAGLIAGCGALGVAISDD
CCEEEEECCCCCCCCEEEEEECCCCCEEECCCCCCCHHHHCCCCCEEEECCHHCEEECCH
LNAVVEGCDVLIDFTTPKVSLKNLEVCALKKKSIVIGSTGFTPEERALAVELAREIPAVL
HHHHHCCCEEEEECCCCCEECCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHCHHHH
APNMSVGVNVCFKILKDVAKTLGDDFDVEIVELHHNKKKDAPSGTAVRMGEVVAEALGRD
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
YNKVATYHREGICGERTKEEIGMQTVRGGDIVGEHTVYFIGMGERIEISHRAMTRDMFSR
HHHHHHHHHCCCCCCHHHHHHCCEEECCCCEECCCEEEEEECCCEEEHHHHHHHHHHHHC
GSVRAAQWVVGKAPGLYDMQDVLGLK
CCCCHHHEEEECCCCCCCHHHHHCCC
>Mature Secondary Structure 
TKIAVCGAAGRMGQRIIVAAREAGCTISGALERPGHEMVGQDAGLIAGCGALGVAISDD
CEEEEECCCCCCCCEEEEEECCCCCEEECCCCCCCHHHHCCCCCEEEECCHHCEEECCH
LNAVVEGCDVLIDFTTPKVSLKNLEVCALKKKSIVIGSTGFTPEERALAVELAREIPAVL
HHHHHCCCEEEEECCCCCEECCCCEEEEEECCEEEEECCCCCCHHHHHHHHHHHHCHHHH
APNMSVGVNVCFKILKDVAKTLGDDFDVEIVELHHNKKKDAPSGTAVRMGEVVAEALGRD
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCC
YNKVATYHREGICGERTKEEIGMQTVRGGDIVGEHTVYFIGMGERIEISHRAMTRDMFSR
HHHHHHHHHCCCCCCHHHHHHCCEEECCCCEECCCEEEEEECCCEEEHHHHHHHHHHHHC
GSVRAAQWVVGKAPGLYDMQDVLGLK
CCCCHHHEEEECCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA