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The map label for this gene is xerC [C]

Identifier: 38637794

GI number: 38637794

Start: 128344

End: 129576

Strand: Direct

Name: xerC [C]

Synonym: PHG129

Alternate gene names: 38637794

Gene position: 128344-129576 (Clockwise)

Preceding gene: 38637792

Following gene: 38637795

Centisome position: 28.38

GC content: 59.29

Gene sequence:

>1233_bases
ATGAATGCAACACGCACAGTCAGCGAATCCGGCGGGCTGCCGGCCCATCACATCGATGCATTTCTTGATCGTCTACGGAC
GGCACACTATTCCGAGGTATCGCTTCGCAAGAAACGAAGAGTCCTGTGCGTGTTCTCCGGGTGGATGAAGAACAGGAACA
TTGACCTGATCGATCTCGATGAGTCTGTCACGGCTCGTTTTATGAATCGCATGATCGACGCTTCAAGAGACCGCGTCCAG
CGTGCGCGTCCCACCTTACGGCAGTTTCTTGCCTATCTGCGCGCGGAAGCCATTGTGTGTTCGCCGACGTTGGGCGGCCA
GTCCGAGATTGCGCGCATTTATCGCCGATACCTGGACCATCTGAGGCAGGATCGTGGACTCGCGAAGAACTCGCTGCTCG
TCTACGGCCCCTTCATTCGCGACTTTCTCGACAGCCACTCGGCCAACGACGGAACGATATTGGCAGATGCATTTTGCGCC
GTAACGATCCGAGATCATTTCCTTACCTACAGCGAAGGTCGATCGGCGGAGTACACGCGGCTGATGGCAGTTGCGCTTCG
CTCGTTCTGCCATTTCCTCTTTCTGCGCGGCGATACGGCCCGAGACCTGTATGAGTCAGTGCCGTCAGTTCGTAAGTGGC
GACAGTCAACTGTACCGACGTTCCTCACGCCTGAGCAGCAAGAAGCTCTCATTGCGTCCGCAGACCGGTCGACTCCGACT
GGGCGCCGTGACTACGCAATCCTGCTGTTGTTGGCGCGGCTCGGTCTACGTGCCGGAGAAATAGTTGCCATGCAGCTCGA
CGACATTCACTGGCGTTCGGGGGAACTCGTCGTTCATGGCAAGGGGCAGATGGTGGAGCACGTCCCCCTGCCATCGGAGG
TCGGAGCAGCAATCGCTACATATCTCCGCGATGGTCGCGGAGCAAGTGCATCGCGGCACGTATTCCTTCGTAGATTGGCA
CCTCGGGTTGGTCTGGCGGGACCGGCGGCGATTGGCAAGATTGTTTGTCAGGCCTTCGCACGTGCAGGTTTCCGCCCCGC
GTGCCGTGGTTCCGCACATCTGTTCCGTCACGGTCTGGCGACGACGATGATTCGCCACGGGGCCTCGATCGCAGAAATAG
CTGAGGTCTTGCGGCACCGCTCACCGGACAGTACCGCGATCTATGCAAAGGTCGCGTTCGAGGACCTGCGCGGGGTCGCG
CGCTCGTGGCCCACGGCGGGAGGTGCAATATGA

Upstream 100 bases:

>100_bases
GTGCACGCGCATGACGGTGGGTATGGCCTTTCATGATCGCTGTGTCGGCATAAACATATGATGTCTCAGGCTGGCTAATG
CGCTGGCCAGGAGAGATCAG

Downstream 100 bases:

>100_bases
CTTCGATCCGTGACTCCCTCGCTCGGTACGTGGCGGTCCGCCGCGCTCTCGGGGCATCATTCTATGAACCTGCATTGGCA
CTCGGTCATTTCGTTGATCT

Product: putative integrase/recombinase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 410; Mature: 410

Protein sequence:

>410_residues
MNATRTVSESGGLPAHHIDAFLDRLRTAHYSEVSLRKKRRVLCVFSGWMKNRNIDLIDLDESVTARFMNRMIDASRDRVQ
RARPTLRQFLAYLRAEAIVCSPTLGGQSEIARIYRRYLDHLRQDRGLAKNSLLVYGPFIRDFLDSHSANDGTILADAFCA
VTIRDHFLTYSEGRSAEYTRLMAVALRSFCHFLFLRGDTARDLYESVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPT
GRRDYAILLLLARLGLRAGEIVAMQLDDIHWRSGELVVHGKGQMVEHVPLPSEVGAAIATYLRDGRGASASRHVFLRRLA
PRVGLAGPAAIGKIVCQAFARAGFRPACRGSAHLFRHGLATTMIRHGASIAEIAEVLRHRSPDSTAIYAKVAFEDLRGVA
RSWPTAGGAI

Sequences:

>Translated_410_residues
MNATRTVSESGGLPAHHIDAFLDRLRTAHYSEVSLRKKRRVLCVFSGWMKNRNIDLIDLDESVTARFMNRMIDASRDRVQ
RARPTLRQFLAYLRAEAIVCSPTLGGQSEIARIYRRYLDHLRQDRGLAKNSLLVYGPFIRDFLDSHSANDGTILADAFCA
VTIRDHFLTYSEGRSAEYTRLMAVALRSFCHFLFLRGDTARDLYESVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPT
GRRDYAILLLLARLGLRAGEIVAMQLDDIHWRSGELVVHGKGQMVEHVPLPSEVGAAIATYLRDGRGASASRHVFLRRLA
PRVGLAGPAAIGKIVCQAFARAGFRPACRGSAHLFRHGLATTMIRHGASIAEIAEVLRHRSPDSTAIYAKVAFEDLRGVA
RSWPTAGGAI
>Mature_410_residues
MNATRTVSESGGLPAHHIDAFLDRLRTAHYSEVSLRKKRRVLCVFSGWMKNRNIDLIDLDESVTARFMNRMIDASRDRVQ
RARPTLRQFLAYLRAEAIVCSPTLGGQSEIARIYRRYLDHLRQDRGLAKNSLLVYGPFIRDFLDSHSANDGTILADAFCA
VTIRDHFLTYSEGRSAEYTRLMAVALRSFCHFLFLRGDTARDLYESVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPT
GRRDYAILLLLARLGLRAGEIVAMQLDDIHWRSGELVVHGKGQMVEHVPLPSEVGAAIATYLRDGRGASASRHVFLRRLA
PRVGLAGPAAIGKIVCQAFARAGFRPACRGSAHLFRHGLATTMIRHGASIAEIAEVLRHRSPDSTAIYAKVAFEDLRGVA
RSWPTAGGAI

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerd Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=290, Percent_Identity=26.8965517241379, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789261, Length=316, Percent_Identity=26.5822784810127, Blast_Score=73, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45647; Mature: 45647

Theoretical pI: Translated: 10.50; Mature: 10.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATRTVSESGGLPAHHIDAFLDRLRTAHYSEVSLRKKRRVLCVFSGWMKNRNIDLIDLD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCEEECC
ESVTARFMNRMIDASRDRVQRARPTLRQFLAYLRAEAIVCSPTLGGQSEIARIYRRYLDH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHH
LRQDRGLAKNSLLVYGPFIRDFLDSHSANDGTILADAFCAVTIRDHFLTYSEGRSAEYTR
HHHHCCCCCCCEEEECHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHEEECCCCCHHHHH
LMAVALRSFCHFLFLRGDTARDLYESVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC
GRRDYAILLLLARLGLRAGEIVAMQLDDIHWRSGELVVHGKGQMVEHVPLPSEVGAAIAT
CCHHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCEEEECCCCEEECCCCCHHHHHHHHH
YLRDGRGASASRHVFLRRLAPRVGLAGPAAIGKIVCQAFARAGFRPACRGSAHLFRHGLA
HHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
TTMIRHGASIAEIAEVLRHRSPDSTAIYAKVAFEDLRGVARSWPTAGGAI
HHHHHCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNATRTVSESGGLPAHHIDAFLDRLRTAHYSEVSLRKKRRVLCVFSGWMKNRNIDLIDLD
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEHHHCCCCCCEEECC
ESVTARFMNRMIDASRDRVQRARPTLRQFLAYLRAEAIVCSPTLGGQSEIARIYRRYLDH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHH
LRQDRGLAKNSLLVYGPFIRDFLDSHSANDGTILADAFCAVTIRDHFLTYSEGRSAEYTR
HHHHCCCCCCCEEEECHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHEEECCCCCHHHHH
LMAVALRSFCHFLFLRGDTARDLYESVPSVRKWRQSTVPTFLTPEQQEALIASADRSTPT
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCC
GRRDYAILLLLARLGLRAGEIVAMQLDDIHWRSGELVVHGKGQMVEHVPLPSEVGAAIAT
CCHHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCEEEECCCCEEECCCCCHHHHHHHHH
YLRDGRGASASRHVFLRRLAPRVGLAGPAAIGKIVCQAFARAGFRPACRGSAHLFRHGLA
HHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH
TTMIRHGASIAEIAEVLRHRSPDSTAIYAKVAFEDLRGVARSWPTAGGAI
HHHHHCCCCHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]