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The map label for this gene is yncD [C]

Identifier: 38637693

GI number: 38637693

Start: 26623

End: 28839

Strand: Direct

Name: yncD [C]

Synonym: PHG028

Alternate gene names: 38637693

Gene position: 26623-28839 (Clockwise)

Preceding gene: 38637692

Following gene: 38637700

Centisome position: 5.89

GC content: 64.1

Gene sequence:

>2217_bases
ATGATTCAGTGTGCATTCAAGATTGTGATGAAAGCCGTAGGGAAGAATTGCGCATCGGGTCAAAGGCCGGGTTGTCGTGA
CGCTCCCCAGGCGCTCGCGCCGCATTGCGGCCCGTGCCTGCGACGGCCCTCGACGCTGGCGATCGGAGTTGCGGTAAGCT
GCTGCGCCATCCCTCATGGCGCCTCGATCGCCGGCGGCGTGCAGCAGCCCGAGGCGCAACTCAGGACGGTGACCGTGCAA
GGCTCGCAGGCGGAGGCAGATGCGACCGGGGAGGCTGCCAGTCAGGGCTATGTCACGCGCGGGCAGCTCGAAAACCGGCC
ACTGCTGCGGCCCAGGGAACTGCTTGAAACGGTGCCGGGGCTGATCGTCACGCAACACAGCGGCGACGGCAAGGCTAACC
AGTACTTCCTGCGCGGCTTCAACCTCGACCATGGCACCGACCTGGCCACCACCGTGGCAAGCATGCCCGTCAATATGCGC
ACCCATGTGCATGGCCAGGGCTACACCGACCTCAACTTCGTGATTCCTGAACTGGTGAGTGGCATTGCCTACAAGAAGGG
AACCTACTTCGCGGAAGAGGGCGATTTCTCCGCGGCCGGCGCGGTCCGGATAGATTATGTTTCCAGCCTGCCGCAAGGCA
TCGCGCAGCTGGAGCTGGGCCAGCACGGCTACCGGCGCGCGCTGCTGGCCGACTCTAATCAGGTAGGACCGGGCACGCTG
CTCTATGGCTTCGAATGGTTGGGCGAGAACGGCCCTTGGGTGCTGCCGGAAGGCGTGCACAAGCTCAACGGCGTGCTGCG
CTACAGCTTGCCGCTGGGCGGCGGCGAGCGCCTAGGCATCACGGCGATGGCTTACAAGAACGCCTGGAACTCGACGGACC
AGGTGCCGCAGCGCGCCATCGACCAGGGCCTGATCTCCCGCTTTGGCCATATCGATCCCACCGACGGTGGCGCATCGTCG
CGCTACAGCCTTTCCGCCGACTGGCAGCGGCCGCTCCAGGACGGCCAGTTCAAGGCCAATGCCTATATGATCAAGAGCCG
CCTGCAACTGTTCTCCAACTTCACCTACGCGCTGAACAACCCCGAGCGCGGCGACCAGTTCGAGCAGTTCGAGAACCGGG
TGACCACCGGCGCCAATGCGTCGCGCACCTGGTTCGGCACGCTCGCGGGACGCGACACTGAGTCCGAACTCGGCACGCAG
CTGCGCTACGAGCGGCTCGATCCCATTACGCTCAACAACACTGCGGCGCGGCATTCCTACCAGCAAGTCCGCAGCGACCG
CGTCAACGAAACCAGCGCCGCGCTGTATCTGCGTAATACCGTCCAATGGCTGCCCTGGCTGCGCACCGTGGCCGGCCTGC
GCGCGGACCAGTTCTGGTACGGCGTGTCCAGCGACAATCCCGCCAATTCCGGCAACGGTCGTGATCACATCGTTAGCCCC
AAGCTGAGCCTGGTGTTGTCGCCCACGGCCAAGACCGATGTGTTCGTCAACTGGGGGCGCGGATATCACAGCAACGACGT
GCGCGGCGCCACCGCCACGGTCGATCCTTCCACGGGAGATCCCGTGCAAAAGGTGAGCGTGCTAGTTCCCGCCACGGGTT
GCGAGCTGGGTGTGCGCACAGGGGACGTGTTGCCCGGGCTGCAGTTGTCGGCATCGCTATGGCGCCTCAATATCGGCTCT
GAACTGGTGTTCTCGGGCGATACCGGCACTACCGAGCCGAGCCGGCCAAGCCGGCGCACGGGCATCGAGCTGACCGCCTA
CTATGTGCCCATGGCAGGGCTCATCATCGACGCGGACGCCGCCTTTTCCCGCGCGCGTTTCCGCGATCACGAGAGCATCG
GCGACTACATTCCGGAATCCATCCAGACCACCGCGTCGATGGGCTTGTCCGCCAACCGGGGCCGCTGGTCGTTTGGCGCG
AGGATGCGCTATTTTGGCCCGCGTCCGCTGATCGAGGACAACAGCGTGCGCTCCGCCTCGTCCTTCCTGGTCAATCTCAA
GCTCGGCTACCGCGTGCAAAAGAACGTGCGGATCTTCGCGGAAGTACTGAATGTGCTGGGCAAGCGGGCCAACGATATCG
ACTACTACTATGCTTCGCTGCTCAAGGGAGAGACATTTCCCCTGGATGCCAGCGGTGCGGCCGCCGGCATCAACGACCAC
CATATCCATCCGGCTGAGCCGCGCACCTTGCGCGTTGGCATCACCTGGAGTTTTTGA

Upstream 100 bases:

>100_bases
TACGTGCTAACCCACCCGAACGCGAAGATCCCGCAGGTACCTGCTGGTTCGCGATCTGCGCTTCGGCCAAGTACTTCTGG
GCAGTCTTGAAGGAGGCTCA

Downstream 100 bases:

>100_bases
TAACGAAGCAAGCGGCCCCGGCTAGGGTGGCCACACTCCTTCGGCCGCTCACCAGGCCTAATCCCATTCGGAACAAGAGT
TTTGACGTCCGCATAAATCT

Product: putative TonB-dependent outer membrane receptor

Products: NA

Alternate protein names: NB-Dependent Receptor Plug; Nb-Dependent Receptor; Outer Membrane Protein; Outer Membrane Receptor Signal Peptide Protein; Outer Membrane Receptor; NB-Dependent Receptor-Like Protein; NB-Dependent Outer Membrane Receptor; Outer Membrane Receptor For Iron Transport; NB Dependent/Ligand-Gated Channel; NB-Dependent Receptor Plug Domain Protein; Iron Transport Outer Membrane Receptor; Outer Membrane Recepter Signal Peptide Protein; NB-Dependent Receptor Cobalamin Transporter

Number of amino acids: Translated: 738; Mature: 738

Protein sequence:

>738_residues
MIQCAFKIVMKAVGKNCASGQRPGCRDAPQALAPHCGPCLRRPSTLAIGVAVSCCAIPHGASIAGGVQQPEAQLRTVTVQ
GSQAEADATGEAASQGYVTRGQLENRPLLRPRELLETVPGLIVTQHSGDGKANQYFLRGFNLDHGTDLATTVASMPVNMR
THVHGQGYTDLNFVIPELVSGIAYKKGTYFAEEGDFSAAGAVRIDYVSSLPQGIAQLELGQHGYRRALLADSNQVGPGTL
LYGFEWLGENGPWVLPEGVHKLNGVLRYSLPLGGGERLGITAMAYKNAWNSTDQVPQRAIDQGLISRFGHIDPTDGGASS
RYSLSADWQRPLQDGQFKANAYMIKSRLQLFSNFTYALNNPERGDQFEQFENRVTTGANASRTWFGTLAGRDTESELGTQ
LRYERLDPITLNNTAARHSYQQVRSDRVNETSAALYLRNTVQWLPWLRTVAGLRADQFWYGVSSDNPANSGNGRDHIVSP
KLSLVLSPTAKTDVFVNWGRGYHSNDVRGATATVDPSTGDPVQKVSVLVPATGCELGVRTGDVLPGLQLSASLWRLNIGS
ELVFSGDTGTTEPSRPSRRTGIELTAYYVPMAGLIIDADAAFSRARFRDHESIGDYIPESIQTTASMGLSANRGRWSFGA
RMRYFGPRPLIEDNSVRSASSFLVNLKLGYRVQKNVRIFAEVLNVLGKRANDIDYYYASLLKGETFPLDASGAAAGINDH
HIHPAEPRTLRVGITWSF

Sequences:

>Translated_738_residues
MIQCAFKIVMKAVGKNCASGQRPGCRDAPQALAPHCGPCLRRPSTLAIGVAVSCCAIPHGASIAGGVQQPEAQLRTVTVQ
GSQAEADATGEAASQGYVTRGQLENRPLLRPRELLETVPGLIVTQHSGDGKANQYFLRGFNLDHGTDLATTVASMPVNMR
THVHGQGYTDLNFVIPELVSGIAYKKGTYFAEEGDFSAAGAVRIDYVSSLPQGIAQLELGQHGYRRALLADSNQVGPGTL
LYGFEWLGENGPWVLPEGVHKLNGVLRYSLPLGGGERLGITAMAYKNAWNSTDQVPQRAIDQGLISRFGHIDPTDGGASS
RYSLSADWQRPLQDGQFKANAYMIKSRLQLFSNFTYALNNPERGDQFEQFENRVTTGANASRTWFGTLAGRDTESELGTQ
LRYERLDPITLNNTAARHSYQQVRSDRVNETSAALYLRNTVQWLPWLRTVAGLRADQFWYGVSSDNPANSGNGRDHIVSP
KLSLVLSPTAKTDVFVNWGRGYHSNDVRGATATVDPSTGDPVQKVSVLVPATGCELGVRTGDVLPGLQLSASLWRLNIGS
ELVFSGDTGTTEPSRPSRRTGIELTAYYVPMAGLIIDADAAFSRARFRDHESIGDYIPESIQTTASMGLSANRGRWSFGA
RMRYFGPRPLIEDNSVRSASSFLVNLKLGYRVQKNVRIFAEVLNVLGKRANDIDYYYASLLKGETFPLDASGAAAGINDH
HIHPAEPRTLRVGITWSF
>Mature_738_residues
MIQCAFKIVMKAVGKNCASGQRPGCRDAPQALAPHCGPCLRRPSTLAIGVAVSCCAIPHGASIAGGVQQPEAQLRTVTVQ
GSQAEADATGEAASQGYVTRGQLENRPLLRPRELLETVPGLIVTQHSGDGKANQYFLRGFNLDHGTDLATTVASMPVNMR
THVHGQGYTDLNFVIPELVSGIAYKKGTYFAEEGDFSAAGAVRIDYVSSLPQGIAQLELGQHGYRRALLADSNQVGPGTL
LYGFEWLGENGPWVLPEGVHKLNGVLRYSLPLGGGERLGITAMAYKNAWNSTDQVPQRAIDQGLISRFGHIDPTDGGASS
RYSLSADWQRPLQDGQFKANAYMIKSRLQLFSNFTYALNNPERGDQFEQFENRVTTGANASRTWFGTLAGRDTESELGTQ
LRYERLDPITLNNTAARHSYQQVRSDRVNETSAALYLRNTVQWLPWLRTVAGLRADQFWYGVSSDNPANSGNGRDHIVSP
KLSLVLSPTAKTDVFVNWGRGYHSNDVRGATATVDPSTGDPVQKVSVLVPATGCELGVRTGDVLPGLQLSASLWRLNIGS
ELVFSGDTGTTEPSRPSRRTGIELTAYYVPMAGLIIDADAAFSRARFRDHESIGDYIPESIQTTASMGLSANRGRWSFGA
RMRYFGPRPLIEDNSVRSASSFLVNLKLGYRVQKNVRIFAEVLNVLGKRANDIDYYYASLLKGETFPLDASGAAAGINDH
HIHPAEPRTLRVGITWSF

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 80312; Mature: 80312

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQCAFKIVMKAVGKNCASGQRPGCRDAPQALAPHCGPCLRRPSTLAIGVAVSCCAIPHG
CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHCCCCCEEEHHHHHHHCCCCC
ASIAGGVQQPEAQLRTVTVQGSQAEADATGEAASQGYVTRGQLENRPLLRPRELLETVPG
CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHCCCEEECCCCCCCCCCHHHHHHHCCC
LIVTQHSGDGKANQYFLRGFNLDHGTDLATTVASMPVNMRTHVHGQGYTDLNFVIPELVS
EEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
GIAYKKGTYFAEEGDFSAAGAVRIDYVSSLPQGIAQLELGQHGYRRALLADSNQVGPGTL
HHEECCCCEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCEE
LYGFEWLGENGPWVLPEGVHKLNGVLRYSLPLGGGERLGITAMAYKNAWNSTDQVPQRAI
EEEEEEECCCCCEECCCHHHHHCCEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHH
DQGLISRFGHIDPTDGGASSRYSLSADWQRPLQDGQFKANAYMIKSRLQLFSNFTYALNN
HHHHHHHCCCCCCCCCCCCCEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEECC
PERGDQFEQFENRVTTGANASRTWFGTLAGRDTESELGTQLRYERLDPITLNNTAARHSY
CCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHH
QQVRSDRVNETSAALYLRNTVQWLPWLRTVAGLRADQFWYGVSSDNPANSGNGRDHIVSP
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECC
KLSLVLSPTAKTDVFVNWGRGYHSNDVRGATATVDPSTGDPVQKVSVLVPATGCELGVRT
CEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCHHEEEEEEECCCCEECCCC
GDVLPGLQLSASLWRLNIGSELVFSGDTGTTEPSRPSRRTGIELTAYYVPMAGLIIDADA
CCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECHH
AFSRARFRDHESIGDYIPESIQTTASMGLSANRGRWSFGARMRYFGPRPLIEDNSVRSAS
HHHHHHHHCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
SFLVNLKLGYRVQKNVRIFAEVLNVLGKRANDIDYYYASLLKGETFPLDASGAAAGINDH
EEEEEEEECCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
HIHPAEPRTLRVGITWSF
CCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MIQCAFKIVMKAVGKNCASGQRPGCRDAPQALAPHCGPCLRRPSTLAIGVAVSCCAIPHG
CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCCCCHHHCCCCCEEEHHHHHHHCCCCC
ASIAGGVQQPEAQLRTVTVQGSQAEADATGEAASQGYVTRGQLENRPLLRPRELLETVPG
CCCCCCCCCCCCEEEEEEEECCCCCCCCCCCHHHCCCEEECCCCCCCCCCHHHHHHHCCC
LIVTQHSGDGKANQYFLRGFNLDHGTDLATTVASMPVNMRTHVHGQGYTDLNFVIPELVS
EEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
GIAYKKGTYFAEEGDFSAAGAVRIDYVSSLPQGIAQLELGQHGYRRALLADSNQVGPGTL
HHEECCCCEEECCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCHHEEEECCCCCCCCCEE
LYGFEWLGENGPWVLPEGVHKLNGVLRYSLPLGGGERLGITAMAYKNAWNSTDQVPQRAI
EEEEEEECCCCCEECCCHHHHHCCEEEEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHH
DQGLISRFGHIDPTDGGASSRYSLSADWQRPLQDGQFKANAYMIKSRLQLFSNFTYALNN
HHHHHHHCCCCCCCCCCCCCEEEECCCHHCCCCCCCCCHHHHHHHHHHHHHHCCEEEECC
PERGDQFEQFENRVTTGANASRTWFGTLAGRDTESELGTQLRYERLDPITLNNTAARHSY
CCCCCHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHH
QQVRSDRVNETSAALYLRNTVQWLPWLRTVAGLRADQFWYGVSSDNPANSGNGRDHIVSP
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCEEECC
KLSLVLSPTAKTDVFVNWGRGYHSNDVRGATATVDPSTGDPVQKVSVLVPATGCELGVRT
CEEEEECCCCCCEEEEECCCCCCCCCCCCCEEEECCCCCCCHHEEEEEEECCCCEECCCC
GDVLPGLQLSASLWRLNIGSELVFSGDTGTTEPSRPSRRTGIELTAYYVPMAGLIIDADA
CCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECHH
AFSRARFRDHESIGDYIPESIQTTASMGLSANRGRWSFGARMRYFGPRPLIEDNSVRSAS
HHHHHHHHCHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCC
SFLVNLKLGYRVQKNVRIFAEVLNVLGKRANDIDYYYASLLKGETFPLDASGAAAGINDH
EEEEEEEECCEECCHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCC
HIHPAEPRTLRVGITWSF
CCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA