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The map label for this gene is hoxL

Identifier: 38637674

GI number: 38637674

Start: 4900

End: 5223

Strand: Direct

Name: hoxL

Synonym: PHG006

Alternate gene names: 38637674

Gene position: 4900-5223 (Clockwise)

Preceding gene: 38637673

Following gene: 38637675

Centisome position: 1.08

GC content: 60.19

Gene sequence:

>324_bases
ATGTGTATTGGCATTCCCATGCAGGTCATGGCGATCGAGCCTGGATATGCGGTCTGTGCGGGACGCGGCGAACGACGGAG
AGTCTCGAGCGCGCTGGTTGGTGACTGCCAGCAGGGCGACTGGCTGCTGGTCTTCCTGGATTCGGCGCGTGAGCGGATCG
ATGCGCTCAGGGCGCATGAAATCGATGCCACGCTGGATATGCTGCAAGCGGCCCTGCTGGGTCTTGACGCATCCGAAGCG
CAACCACGTTTTGAACTGCCATCGGCGATGGCCCGCGAGGACCTCGCCGTTCTATCCAACTCCAGAGATTCTTCCTCTTA
CTAA

Upstream 100 bases:

>100_bases
TCTGGCGCTCGATCGCTACGAAGCCGAACGTCCTTCGCCTCGGGCCGCCTGCCGGATTGGCGATGAACGTTTTATGCCAC
AGGATTTGTGAGGGGCGAAT

Downstream 100 bases:

>100_bases
GGTAACTTTCATGTCGACCGAATCAGCGATGTTTCTTGCCCCCATCCCGACGACGGACGCAGTACCGCCGGTGATCGAAC
GTCTGGTCGAACAGCATCAG

Product: HoxL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MCIGIPMQVMAIEPGYAVCAGRGERRRVSSALVGDCQQGDWLLVFLDSARERIDALRAHEIDATLDMLQAALLGLDASEA
QPRFELPSAMAREDLAVLSNSRDSSSY

Sequences:

>Translated_107_residues
MCIGIPMQVMAIEPGYAVCAGRGERRRVSSALVGDCQQGDWLLVFLDSARERIDALRAHEIDATLDMLQAALLGLDASEA
QPRFELPSAMAREDLAVLSNSRDSSSY
>Mature_107_residues
MCIGIPMQVMAIEPGYAVCAGRGERRRVSSALVGDCQQGDWLLVFLDSARERIDALRAHEIDATLDMLQAALLGLDASEA
QPRFELPSAMAREDLAVLSNSRDSSSY

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hupF/hypC family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): HOXL_CUPNH (P31899)

Other databases:

- EMBL:   M96433
- EMBL:   AY305378
- PIR:   F43255
- RefSeq:   NP_942648.1
- ProteinModelPortal:   P31899
- SMR:   P31899
- GeneID:   2656809
- GenomeReviews:   AY305378_GR
- KEGG:   reh:PHG006
- HOGENOM:   HBG556935
- OMA:   SAMARED
- ProtClustDB:   CLSK923792
- BioCyc:   REUT381666:PHG006-MONOMER
- InterPro:   IPR019812
- InterPro:   IPR001109
- PRINTS:   PR00445
- TIGRFAMs:   TIGR00074

Pfam domain/function: PF01455 HupF_HypC

EC number: NA

Molecular weight: Translated: 11641; Mature: 11641

Theoretical pI: Translated: 4.35; Mature: 4.35

Prosite motif: PS01097 HUPF_HYPC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCIGIPMQVMAIEPGYAVCAGRGERRRVSSALVGDCQQGDWLLVFLDSARERIDALRAHE
CCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHH
IDATLDMLQAALLGLDASEAQPRFELPSAMAREDLAVLSNSRDSSSY
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MCIGIPMQVMAIEPGYAVCAGRGERRRVSSALVGDCQQGDWLLVFLDSARERIDALRAHE
CCCCCCEEEEEECCCCEEECCCCCHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHH
IDATLDMLQAALLGLDASEAQPRFELPSAMAREDLAVLSNSRDSSSY
HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1383192; 12948488