Click here to switch to the map view.

The map label for this gene is rpoE [H]

Identifier: 38234905

GI number: 38234905

Start: 2479572

End: 2480174

Strand: Direct

Name: rpoE [H]

Synonym: DIP2372

Alternate gene names: 38234905

Gene position: 2479572-2480174 (Clockwise)

Preceding gene: 38234904

Following gene: 38234906

Centisome position: 99.64

GC content: 58.71

Gene sequence:

>603_bases
ATGGTGGGAGGGATTGCCGACCCCTGCGTCGGCATAGTGGAGCACGCCAGTTGCAGCGACGACCAGCTGGTCACGCTCTA
TCTTGAAGGCAATGGCCAAGCGTTTCACGAGATCACACGCCGCCACTATAAAAAGCTGTGGTGGCTTGCTAAAAAGTACA
CGCAATCGGCAACGGATGCTGACGACATCATGCAGGAATCCTTGCTGAAAGCCAGCCACAGCCTGCACCGGTATCGTCGT
GACGCGGCGCTGAGCACGTGGCTTTATAAGCTTGTTGCCAACACCGCCTACGACTATGTTCACCGCCGTCGTGAGCGCAA
CTTCATACTTGTCGACGACTACCACGAAGCCGCCATCGCCAGCGGTCACCCCAGCTCCCACGATCCCCTCGACGCCCACG
AAACAACCATGTCCGTCTCCCGCGCCGTTCAGCAATTAGCACCCGATCAGCGCACCGCCATTGAGCTTGTCGACATCATG
GGCTACGACATCAACCTCGCCGCGGCAATCACGGGGGTCAAACCTGGCACTATTAAATCGCGGCGGGCGCGGGCAAAAAC
TCAGCTGCAGGCCATGCTGGAGCCCCTCATGACGGACAACTAG

Upstream 100 bases:

>100_bases
TATAGCACATCCAATACATTGTGAAGTTAAAACTCGAAGGCCACCCACGCTCCGTCCACTATGTTGTCCAAGCACATGAC
TCATAACAGGGGGATTGATC

Downstream 100 bases:

>100_bases
GCAACGCAGCGCTTATCAGTGCGGTCTGCCTCACATATGGAATGAATCCCACCAAGTAGGCGTTGTGCCCATCAAACAGC
GACTACTGATTACACTGTGG

Product: putative RNA polymerase sigma factor

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MVGGIADPCVGIVEHASCSDDQLVTLYLEGNGQAFHEITRRHYKKLWWLAKKYTQSATDADDIMQESLLKASHSLHRYRR
DAALSTWLYKLVANTAYDYVHRRRERNFILVDDYHEAAIASGHPSSHDPLDAHETTMSVSRAVQQLAPDQRTAIELVDIM
GYDINLAAAITGVKPGTIKSRRARAKTQLQAMLEPLMTDN

Sequences:

>Translated_200_residues
MVGGIADPCVGIVEHASCSDDQLVTLYLEGNGQAFHEITRRHYKKLWWLAKKYTQSATDADDIMQESLLKASHSLHRYRR
DAALSTWLYKLVANTAYDYVHRRRERNFILVDDYHEAAIASGHPSSHDPLDAHETTMSVSRAVQQLAPDQRTAIELVDIM
GYDINLAAAITGVKPGTIKSRRARAKTQLQAMLEPLMTDN
>Mature_200_residues
MVGGIADPCVGIVEHASCSDDQLVTLYLEGNGQAFHEITRRHYKKLWWLAKKYTQSATDADDIMQESLLKASHSLHRYRR
DAALSTWLYKLVANTAYDYVHRRRERNFILVDDYHEAAIASGHPSSHDPLDAHETTMSVSRAVQQLAPDQRTAIELVDIM
GYDINLAAAITGVKPGTIKSRRARAKTQLQAMLEPLMTDN

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=185, Percent_Identity=28.1081081081081, Blast_Score=80, Evalue=9e-17,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 22506; Mature: 22506

Theoretical pI: Translated: 7.08; Mature: 7.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGGIADPCVGIVEHASCSDDQLVTLYLEGNGQAFHEITRRHYKKLWWLAKKYTQSATDA
CCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DDIMQESLLKASHSLHRYRRDAALSTWLYKLVANTAYDYVHRRRERNFILVDDYHEAAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH
SGHPSSHDPLDAHETTMSVSRAVQQLAPDQRTAIELVDIMGYDINLAAAITGVKPGTIKS
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHEEECCCCCCCHH
RRARAKTQLQAMLEPLMTDN
HHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MVGGIADPCVGIVEHASCSDDQLVTLYLEGNGQAFHEITRRHYKKLWWLAKKYTQSATDA
CCCCCCCHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCH
DDIMQESLLKASHSLHRYRRDAALSTWLYKLVANTAYDYVHRRRERNFILVDDYHEAAIA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH
SGHPSSHDPLDAHETTMSVSRAVQQLAPDQRTAIELVDIMGYDINLAAAITGVKPGTIKS
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHEEECCCCCCCHH
RRARAKTQLQAMLEPLMTDN
HHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]