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The map label for this gene is lytR [H]

Identifier: 38234786

GI number: 38234786

Start: 2340708

End: 2342003

Strand: Direct

Name: lytR [H]

Synonym: DIP2250

Alternate gene names: 38234786

Gene position: 2340708-2342003 (Clockwise)

Preceding gene: 38234784

Following gene: 38234788

Centisome position: 94.06

GC content: 60.19

Gene sequence:

>1296_bases
ATGGATGAACAGCGCAATCAGGGTGAGTTCCTTCTTGGTTCAGATGGAAAACCCCTTTTGGACCGCTACGGTCGCCCCAT
CCGGCGGCGACGCTCCGCACCGCGCCGCCCTAAGCTCGACCGCACTGAACCTCGGCGTGCTGCACCCAGCGAAGCCACAC
GGGTAATCCGCACGGAAACCACCCAAATGCCAGCTCAGCCTGGGGCTGTTCCGCAGGAGCGCCCACGGCAATACATTCCT
ACCCCCGAAGAGCAGCAACGCTACCGCGCACAGCAGTACTACCAGCAGCAACCGGTGCAACCTGGTCAGCCGGTGCAGCC
GGGGTTTGAGCCTAATCGACGCTACCGTCGCAGCCAGGTCACCCTTCCTCCAGAGCCAAAGAAGCGTCGTCGTTTGCGCC
CTGGCGGCTGCATTGCGGGTTTGGTGTGGACGCTCGTCATTGTCATGGTTCTTGGTATCGCTGGCACACTGTGGCTAGAC
ACTCGGCTCAATCGTGTTCAGGCTGCCCCGCCGCAGCACATTGCTAAGACATCCGGCACGAACTGGCTGCTCGTGGGCTC
TGACTCCCGCGCCGGCCTGTCCGAGGAGGATGTTCAGCGTTTGGGCACGGGTGGCGACATCGGCTCCATGCGCACGGACA
CGATCATGGTGTTGCATATTCCGTCGTCAGGCAAGGCCACACTGATGTCGATCCCGCGTGACTCCTATGTGGAAATCCCA
GGCTACGGCATGGACAAAATCAATGCGTCGTTCACCTACGGCGGTGCGCCTTTACTCACCCAAACCGTGGAAAACGCCAC
TGGCCTGCGCATTAACCACTATGCCGAGATCGGTATGGGCGGGTTGGCCAATGTGGTCGACGCGGTTGGTGGTATCGAGG
TATGCCCCGCCGAGCCTATCGACGACCCCCTCGCCGGCCTCAACATCGCAGCCGGCTGCCAAAAAGTCGACGGCCCCACT
GCTTTGGGTTATGTGCGCACCCGCCACACCGCTCTAGGTGATCTTGACCGCGTGCAGCGTCAGCGCGAATTCTTTGCAGC
TTTGGTCAACAAAGTGACCTCCACGTCGACTTTGGCTAATCCTTTCCGCATCATGCCCACGATTAATACTGTGGCGGGTT
CGTTCACTGTGGGTAAGAAGGATCACGCGTGGCATTTGGCCCGGGTGGCGCTCGCTATGCGCGAAGGTGTGGAAACCGTG
ACGGTGCCATATGCAGGTTTTGCTGATTATGACGTCGGAAATGTGGTCCTGTGGGACGAGGTCGCTTCCGAGGAGCTGTT
CGCTTCCCTGCGTTAG

Upstream 100 bases:

>100_bases
AAGAATGCTATTTCAATTTGCCACCTTATAATCGTCTGTAGTATTTCCCCTTTTGCACTTGAATAAAGGTAATAAATTCC
AACCCTGTATGCTCTAAAGC

Downstream 100 bases:

>100_bases
TGGCCCAAAGGCACAAAGTGAGTAGTTCGTGCCAAATCTTTTTCACCTCCGCGACGTTTCCGCAGGTCGGAGATATTAGA
AAAGATTTAATTTGGCACGA

Product: hypothetical protein

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MDEQRNQGEFLLGSDGKPLLDRYGRPIRRRRSAPRRPKLDRTEPRRAAPSEATRVIRTETTQMPAQPGAVPQERPRQYIP
TPEEQQRYRAQQYYQQQPVQPGQPVQPGFEPNRRYRRSQVTLPPEPKKRRRLRPGGCIAGLVWTLVIVMVLGIAGTLWLD
TRLNRVQAAPPQHIAKTSGTNWLLVGSDSRAGLSEEDVQRLGTGGDIGSMRTDTIMVLHIPSSGKATLMSIPRDSYVEIP
GYGMDKINASFTYGGAPLLTQTVENATGLRINHYAEIGMGGLANVVDAVGGIEVCPAEPIDDPLAGLNIAAGCQKVDGPT
ALGYVRTRHTALGDLDRVQRQREFFAALVNKVTSTSTLANPFRIMPTINTVAGSFTVGKKDHAWHLARVALAMREGVETV
TVPYAGFADYDVGNVVLWDEVASEELFASLR

Sequences:

>Translated_431_residues
MDEQRNQGEFLLGSDGKPLLDRYGRPIRRRRSAPRRPKLDRTEPRRAAPSEATRVIRTETTQMPAQPGAVPQERPRQYIP
TPEEQQRYRAQQYYQQQPVQPGQPVQPGFEPNRRYRRSQVTLPPEPKKRRRLRPGGCIAGLVWTLVIVMVLGIAGTLWLD
TRLNRVQAAPPQHIAKTSGTNWLLVGSDSRAGLSEEDVQRLGTGGDIGSMRTDTIMVLHIPSSGKATLMSIPRDSYVEIP
GYGMDKINASFTYGGAPLLTQTVENATGLRINHYAEIGMGGLANVVDAVGGIEVCPAEPIDDPLAGLNIAAGCQKVDGPT
ALGYVRTRHTALGDLDRVQRQREFFAALVNKVTSTSTLANPFRIMPTINTVAGSFTVGKKDHAWHLARVALAMREGVETV
TVPYAGFADYDVGNVVLWDEVASEELFASLR
>Mature_431_residues
MDEQRNQGEFLLGSDGKPLLDRYGRPIRRRRSAPRRPKLDRTEPRRAAPSEATRVIRTETTQMPAQPGAVPQERPRQYIP
TPEEQQRYRAQQYYQQQPVQPGQPVQPGFEPNRRYRRSQVTLPPEPKKRRRLRPGGCIAGLVWTLVIVMVLGIAGTLWLD
TRLNRVQAAPPQHIAKTSGTNWLLVGSDSRAGLSEEDVQRLGTGGDIGSMRTDTIMVLHIPSSGKATLMSIPRDSYVEIP
GYGMDKINASFTYGGAPLLTQTVENATGLRINHYAEIGMGGLANVVDAVGGIEVCPAEPIDDPLAGLNIAAGCQKVDGPT
ALGYVRTRHTALGDLDRVQRQREFFAALVNKVTSTSTLANPFRIMPTINTVAGSFTVGKKDHAWHLARVALAMREGVETV
TVPYAGFADYDVGNVVLWDEVASEELFASLR

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 47423; Mature: 47423

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEQRNQGEFLLGSDGKPLLDRYGRPIRRRRSAPRRPKLDRTEPRRAAPSEATRVIRTET
CCCCCCCCCEEECCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
TQMPAQPGAVPQERPRQYIPTPEEQQRYRAQQYYQQQPVQPGQPVQPGFEPNRRYRRSQV
HCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCC
TLPPEPKKRRRLRPGGCIAGLVWTLVIVMVLGIAGTLWLDTRLNRVQAAPPQHIAKTSGT
CCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
NWLLVGSDSRAGLSEEDVQRLGTGGDIGSMRTDTIMVLHIPSSGKATLMSIPRDSYVEIP
CEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEECC
GYGMDKINASFTYGGAPLLTQTVENATGLRINHYAEIGMGGLANVVDAVGGIEVCPAEPI
CCCCCCCCCEEEECCCHHHHHHHHCCCCCEEEHHHHHCCCHHHHHHHHHCCCEECCCCCC
DDPLAGLNIAAGCQKVDGPTALGYVRTRHTALGDLDRVQRQREFFAALVNKVTSTSTLAN
CCCHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFRIMPTINTVAGSFTVGKKDHAWHLARVALAMREGVETVTVPYAGFADYDVGNVVLWDE
CEEEEEEHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEHH
VASEELFASLR
HHHHHHHHHCC
>Mature Secondary Structure
MDEQRNQGEFLLGSDGKPLLDRYGRPIRRRRSAPRRPKLDRTEPRRAAPSEATRVIRTET
CCCCCCCCCEEECCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
TQMPAQPGAVPQERPRQYIPTPEEQQRYRAQQYYQQQPVQPGQPVQPGFEPNRRYRRSQV
HCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCC
TLPPEPKKRRRLRPGGCIAGLVWTLVIVMVLGIAGTLWLDTRLNRVQAAPPQHIAKTSGT
CCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCC
NWLLVGSDSRAGLSEEDVQRLGTGGDIGSMRTDTIMVLHIPSSGKATLMSIPRDSYVEIP
CEEEEECCCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEECC
GYGMDKINASFTYGGAPLLTQTVENATGLRINHYAEIGMGGLANVVDAVGGIEVCPAEPI
CCCCCCCCCEEEECCCHHHHHHHHCCCCCEEEHHHHHCCCHHHHHHHHHCCCEECCCCCC
DDPLAGLNIAAGCQKVDGPTALGYVRTRHTALGDLDRVQRQREFFAALVNKVTSTSTLAN
CCCHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PFRIMPTINTVAGSFTVGKKDHAWHLARVALAMREGVETVTVPYAGFADYDVGNVVLWDE
CEEEEEEHHHHCCCEEECCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCEEEEHH
VASEELFASLR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]