| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is ygcB [H]
Identifier: 38234754
GI number: 38234754
Start: 2302097
End: 2304727
Strand: Direct
Name: ygcB [H]
Synonym: DIP2213
Alternate gene names: 38234754
Gene position: 2302097-2304727 (Clockwise)
Preceding gene: 38234753
Following gene: 38234755
Centisome position: 92.5
GC content: 45.72
Gene sequence:
>2631_bases ATGAACCCCCATGAGGAACTATGGGCAAAGCAAAAAGGCTTGGCAAAACCATACCCGTTACTTGCCCATTTACTTGATTC GGCCGCAGTAGCAGGGGCATTGTGGGATCACTGGCTACGCCAAGACTTACGCCAAATGTTTATTGAAGAACTCGGATCAA ACGCACGTGAAATCATTCAATTTGTCGTAGGATCGCATGATATTGGAAAAGCGACCCCGCTATTTCAATATCAAAAAGCG CAAAAAGGTGAAGTATGGGACAGCATTCGCTATGCTATCGATCGAACAGGACGCTATCAAAAACCACTACCGAGTTCATA TCTTGTAAAGAAAACTTCAGGTGGACCAAACCGTCATGAACAGTGGTCCTCTTTCGCTTCTAAAAACGAATATCTAAAAC CCAGTGCTGCAGCAAAAGAAAACTGGATAGGCCTTGCGATTGGTGGACATCATGGACGTTTCGAGCCTGTAGGCTATGGA CGTCACCAAAGAAAAGCAGCGGAAGATCTTGCTAAAAGTGGCTGGTCAGCTGCCCAACAGGATCTCCTTAGGGCATTAGA GAAAGCGAGTGGCATCACCCGAGCTTCGTTGCCTTCGGAACTGTCTCCAGAATTGACTCTCGTGCTTTCAGGATTAACAA TCTTGGCAGACAGAATTTCATCAACTGAATCATTTGTTATCACCGGTGCCAGAATGATCGACGACGGGACCCTTCATCTA GCGACTCCCATAGATTGGCTCAAGACCAGAAAGCTGGACTCCGAAAAACACGTAGCAAAAACTGTAGGAATCTATCATGG TTGGAACAACCACGAGTCAGCAATTCACAGCATTCTCAAGGGATACGATCCACGCCCCCTGCAGACTATAGCTCTCCAAA ATCAAGTTGGCTTACTCAATTTAATGGCTCCAACCGGCAACGGAAAAACAGAAGCTGCAATTCTCCGACATTCGTTGAAG GAAAATGACAGACTTATTTTCCTTTTACCAACTCAAGCTACATCTAATGCGATCATGCGCCGCGTACAAGGTATCTACTC TGATACCCCCAATGTGGCAGCACTGGCTCACTCCTTAGCTTCTGTTGAAGATTTCTATCAAACACCGCTCTCGGTTTTTG ATGATCACTACGATCCTTCGAAAGAACAATTCGAAAGCAGTATGTCTGGTGGACTATATCCATCTTCATTCGTATGCTCC GGCGCCGCCCGACTACTCGCGCCAATTTGTATCGGAACAGTTGACCAAGCCTTAGCTACTGCTCTTCCCGGAAAATGGAT TCATCTACGGATTCTTGCCTTAGCGAATGCACATATCGTGATCGATGAAGTGCATACTCTCGACCATTATCAAACTGCCC TGCTTGAAAATATCCTACCCATTCTCGCGAAGCTCAAAACCAAAATAACTTTCTTAACTGCTACTATGCCAAGTTGGCAG CGAACTAAACTTCTTACTGCTTATGGTGGAGAAGACCTGCAGATTCCTCCTACTGTATTTCCCGCTGCGGAGACGGTGCT TCCAGGTCAATTTAATCGAACACTAATCGATTCCGATAGCACGACCATCGATTTCACCATGGAAGAGACTTCATACGATC ATCTTGTCGAGTCACATGTGAAATGGCATCAGACTACTCGGCTAAATGCTCCACATGCTCGCATTGGTCTGATATGCAAC ACTGTGAAACGTGCACAAGAAATAGCTGCTGCATTAGAAAAAACCAATGATCGTATTGTGCTCTTGCACTCCCGAATGAC GACTGAGCACCGACGTCGCTCAGCAGAGTTACTTGAATCGTTACTGGGACCCAATGGTAACAGAAAAACTATTACTGTTG TAGGCACCCAAGCTATCGAAGCCTCTCTCGATATCGATCTCGACATCCTCAGAACAGAGCTGTGCCCTGCCCCATCGCTC GTTCAGCGCGCAGGACGCGTTTGGCGACGCAATGACCCATATCGTTCATCAAGAATCACAGCTGACCATAAACCTATTTC CGTAGTATTCATTGCAGAAGCTGAAGATTGGCAAGTACTACCGTATTTACGCGCTGAAACTTCCAGAACTCAACGTTGGC TTGAAAAACACAACCAAATGTTTCTACCGCAAATGGCTCAGGAGTTCATCGATGCAGCAACGGTTGATTTGGATACTGCG ACCTCAGAGATGGACCTTGATGCCTTAGCACTGATGGGTATCCATTTAATGAAGGCTGACGGGGCAAAAGCTCGCATACA AGATGTACTGAACTCCGATTCAAAAGTAAGCGACTTCGCACTTTTGACCTCAAAAAATGAGATCGATGAAGCTCAAACTC GATTGATCGAAGAAGGAACGCATCTTCGCATTATTCTCGGCGACGAGAACGAGAGCATACCAGGTGGGTGGAAACATGGT CTTAGTTCTCTTCTCAAATTAAAAGCATCAGATAGAGAAAGTCTACGTACCGCATTGCTTGCTTCGATTCCTCTTCTTGT ATCCGAGAAACAAAAGCAGTTGCTATACCAGCACAATCTAGTACCGCTATCTTCATCAAAAACCGTGCTAGCAGGTTTCT ACTTCCTGCCTAAGGCGCAAAATTTCTATAGCAAAAATCTCGGTTTTATCTGGCCTGAGGAGAAAGATTAA
Upstream 100 bases:
>100_bases GCATCGTTGAAGATCCGGAACTCCTAAATGAATTGATCCTTCATGGTGTTGGCCGAGCAAAAGCTTATGGCTGCGGTTTA CTTTCTGTTAGTGAGATTTA
Downstream 100 bases:
>100_bases TATGCCCTATTCCCATGACGCAATTGCGTTCAGTACAATTCCCGCAAGCCATCAAATCAGGCTTGAAGATCGTCTTTCTT TCCTATATTTGGAATATTGT
Product: putative helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 876; Mature: 876
Protein sequence:
>876_residues MNPHEELWAKQKGLAKPYPLLAHLLDSAAVAGALWDHWLRQDLRQMFIEELGSNAREIIQFVVGSHDIGKATPLFQYQKA QKGEVWDSIRYAIDRTGRYQKPLPSSYLVKKTSGGPNRHEQWSSFASKNEYLKPSAAAKENWIGLAIGGHHGRFEPVGYG RHQRKAAEDLAKSGWSAAQQDLLRALEKASGITRASLPSELSPELTLVLSGLTILADRISSTESFVITGARMIDDGTLHL ATPIDWLKTRKLDSEKHVAKTVGIYHGWNNHESAIHSILKGYDPRPLQTIALQNQVGLLNLMAPTGNGKTEAAILRHSLK ENDRLIFLLPTQATSNAIMRRVQGIYSDTPNVAALAHSLASVEDFYQTPLSVFDDHYDPSKEQFESSMSGGLYPSSFVCS GAARLLAPICIGTVDQALATALPGKWIHLRILALANAHIVIDEVHTLDHYQTALLENILPILAKLKTKITFLTATMPSWQ RTKLLTAYGGEDLQIPPTVFPAAETVLPGQFNRTLIDSDSTTIDFTMEETSYDHLVESHVKWHQTTRLNAPHARIGLICN TVKRAQEIAAALEKTNDRIVLLHSRMTTEHRRRSAELLESLLGPNGNRKTITVVGTQAIEASLDIDLDILRTELCPAPSL VQRAGRVWRRNDPYRSSRITADHKPISVVFIAEAEDWQVLPYLRAETSRTQRWLEKHNQMFLPQMAQEFIDAATVDLDTA TSEMDLDALALMGIHLMKADGAKARIQDVLNSDSKVSDFALLTSKNEIDEAQTRLIEEGTHLRIILGDENESIPGGWKHG LSSLLKLKASDRESLRTALLASIPLLVSEKQKQLLYQHNLVPLSSSKTVLAGFYFLPKAQNFYSKNLGFIWPEEKD
Sequences:
>Translated_876_residues MNPHEELWAKQKGLAKPYPLLAHLLDSAAVAGALWDHWLRQDLRQMFIEELGSNAREIIQFVVGSHDIGKATPLFQYQKA QKGEVWDSIRYAIDRTGRYQKPLPSSYLVKKTSGGPNRHEQWSSFASKNEYLKPSAAAKENWIGLAIGGHHGRFEPVGYG RHQRKAAEDLAKSGWSAAQQDLLRALEKASGITRASLPSELSPELTLVLSGLTILADRISSTESFVITGARMIDDGTLHL ATPIDWLKTRKLDSEKHVAKTVGIYHGWNNHESAIHSILKGYDPRPLQTIALQNQVGLLNLMAPTGNGKTEAAILRHSLK ENDRLIFLLPTQATSNAIMRRVQGIYSDTPNVAALAHSLASVEDFYQTPLSVFDDHYDPSKEQFESSMSGGLYPSSFVCS GAARLLAPICIGTVDQALATALPGKWIHLRILALANAHIVIDEVHTLDHYQTALLENILPILAKLKTKITFLTATMPSWQ RTKLLTAYGGEDLQIPPTVFPAAETVLPGQFNRTLIDSDSTTIDFTMEETSYDHLVESHVKWHQTTRLNAPHARIGLICN TVKRAQEIAAALEKTNDRIVLLHSRMTTEHRRRSAELLESLLGPNGNRKTITVVGTQAIEASLDIDLDILRTELCPAPSL VQRAGRVWRRNDPYRSSRITADHKPISVVFIAEAEDWQVLPYLRAETSRTQRWLEKHNQMFLPQMAQEFIDAATVDLDTA TSEMDLDALALMGIHLMKADGAKARIQDVLNSDSKVSDFALLTSKNEIDEAQTRLIEEGTHLRIILGDENESIPGGWKHG LSSLLKLKASDRESLRTALLASIPLLVSEKQKQLLYQHNLVPLSSSKTVLAGFYFLPKAQNFYSKNLGFIWPEEKD >Mature_876_residues MNPHEELWAKQKGLAKPYPLLAHLLDSAAVAGALWDHWLRQDLRQMFIEELGSNAREIIQFVVGSHDIGKATPLFQYQKA QKGEVWDSIRYAIDRTGRYQKPLPSSYLVKKTSGGPNRHEQWSSFASKNEYLKPSAAAKENWIGLAIGGHHGRFEPVGYG RHQRKAAEDLAKSGWSAAQQDLLRALEKASGITRASLPSELSPELTLVLSGLTILADRISSTESFVITGARMIDDGTLHL ATPIDWLKTRKLDSEKHVAKTVGIYHGWNNHESAIHSILKGYDPRPLQTIALQNQVGLLNLMAPTGNGKTEAAILRHSLK ENDRLIFLLPTQATSNAIMRRVQGIYSDTPNVAALAHSLASVEDFYQTPLSVFDDHYDPSKEQFESSMSGGLYPSSFVCS GAARLLAPICIGTVDQALATALPGKWIHLRILALANAHIVIDEVHTLDHYQTALLENILPILAKLKTKITFLTATMPSWQ RTKLLTAYGGEDLQIPPTVFPAAETVLPGQFNRTLIDSDSTTIDFTMEETSYDHLVESHVKWHQTTRLNAPHARIGLICN TVKRAQEIAAALEKTNDRIVLLHSRMTTEHRRRSAELLESLLGPNGNRKTITVVGTQAIEASLDIDLDILRTELCPAPSL VQRAGRVWRRNDPYRSSRITADHKPISVVFIAEAEDWQVLPYLRAETSRTQRWLEKHNQMFLPQMAQEFIDAATVDLDTA TSEMDLDALALMGIHLMKADGAKARIQDVLNSDSKVSDFALLTSKNEIDEAQTRLIEEGTHLRIILGDENESIPGGWKHG LSSLLKLKASDRESLRTALLASIPLLVSEKQKQLLYQHNLVPLSSSKTVLAGFYFLPKAQNFYSKNLGFIWPEEKD
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=759, Percent_Identity=28.7220026350461, Blast_Score=188, Evalue=1e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006483 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 97554; Mature: 97554
Theoretical pI: Translated: 7.21; Mature: 7.21
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNPHEELWAKQKGLAKPYPLLAHLLDSAAVAGALWDHWLRQDLRQMFIEELGSNAREIIQ CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH FVVGSHDIGKATPLFQYQKAQKGEVWDSIRYAIDRTGRYQKPLPSSYLVKKTSGGPNRHE HHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHH QWSSFASKNEYLKPSAAAKENWIGLAIGGHHGRFEPVGYGRHQRKAAEDLAKSGWSAAQQ HHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH DLLRALEKASGITRASLPSELSPELTLVLSGLTILADRISSTESFVITGARMIDDGTLHL HHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCEEE ATPIDWLKTRKLDSEKHVAKTVGIYHGWNNHESAIHSILKGYDPRPLQTIALQNQVGLLN ECCHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHEEEECCCCCEEE LMAPTGNGKTEAAILRHSLKENDRLIFLLPTQATSNAIMRRVQGIYSDTPNVAALAHSLA EECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH SVEDFYQTPLSVFDDHYDPSKEQFESSMSGGLYPSSFVCSGAARLLAPICIGTVDQALAT HHHHHHHCCHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ALPGKWIHLRILALANAHIVIDEVHTLDHYQTALLENILPILAKLKTKITFLTATMPSWQ HCCCCEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCH RTKLLTAYGGEDLQIPPTVFPAAETVLPGQFNRTLIDSDSTTIDFTMEETSYDHLVESHV HHEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCEEEEEECCCCHHHHHHHHH KWHQTTRLNAPHARIGLICNTVKRAQEIAAALEKTNDRIVLLHSRMTTEHRRRSAELLES HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH LLGPNGNRKTITVVGTQAIEASLDIDLDILRTELCPAPSLVQRAGRVWRRNDPYRSSRIT HHCCCCCCEEEEEEECHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC ADHKPISVVFIAEAEDWQVLPYLRAETSRTQRWLEKHNQMFLPQMAQEFIDAATVDLDTA CCCCCEEEEEEEECCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCC TSEMDLDALALMGIHLMKADGAKARIQDVLNSDSKVSDFALLTSKNEIDEAQTRLIEEGT CCCCCHHHHHHHHHHHEECCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCC HLRIILGDENESIPGGWKHGLSSLLKLKASDRESLRTALLASIPLLVSEKQKQLLYQHNL EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VPLSSSKTVLAGFYFLPKAQNFYSKNLGFIWPEEKD EECCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCC >Mature Secondary Structure MNPHEELWAKQKGLAKPYPLLAHLLDSAAVAGALWDHWLRQDLRQMFIEELGSNAREIIQ CCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH FVVGSHDIGKATPLFQYQKAQKGEVWDSIRYAIDRTGRYQKPLPSSYLVKKTSGGPNRHE HHHCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCHHH QWSSFASKNEYLKPSAAAKENWIGLAIGGHHGRFEPVGYGRHQRKAAEDLAKSGWSAAQQ HHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH DLLRALEKASGITRASLPSELSPELTLVLSGLTILADRISSTESFVITGARMIDDGTLHL HHHHHHHHHCCCEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCEEE ATPIDWLKTRKLDSEKHVAKTVGIYHGWNNHESAIHSILKGYDPRPLQTIALQNQVGLLN ECCHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHEEEECCCCCEEE LMAPTGNGKTEAAILRHSLKENDRLIFLLPTQATSNAIMRRVQGIYSDTPNVAALAHSLA EECCCCCCCHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHH SVEDFYQTPLSVFDDHYDPSKEQFESSMSGGLYPSSFVCSGAARLLAPICIGTVDQALAT HHHHHHHCCHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ALPGKWIHLRILALANAHIVIDEVHTLDHYQTALLENILPILAKLKTKITFLTATMPSWQ HCCCCEEEEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCH RTKLLTAYGGEDLQIPPTVFPAAETVLPGQFNRTLIDSDSTTIDFTMEETSYDHLVESHV HHEEEEEECCCCCCCCCCCCCCCHHCCCCCCCCEEECCCCCEEEEEECCCCHHHHHHHHH KWHQTTRLNAPHARIGLICNTVKRAQEIAAALEKTNDRIVLLHSRMTTEHRRRSAELLES HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHH LLGPNGNRKTITVVGTQAIEASLDIDLDILRTELCPAPSLVQRAGRVWRRNDPYRSSRIT HHCCCCCCEEEEEEECHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCC ADHKPISVVFIAEAEDWQVLPYLRAETSRTQRWLEKHNQMFLPQMAQEFIDAATVDLDTA CCCCCEEEEEEEECCCCEECCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEECCCC TSEMDLDALALMGIHLMKADGAKARIQDVLNSDSKVSDFALLTSKNEIDEAQTRLIEEGT CCCCCHHHHHHHHHHHEECCCHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHHHCCC HLRIILGDENESIPGGWKHGLSSLLKLKASDRESLRTALLASIPLLVSEKQKQLLYQHNL EEEEEECCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC VPLSSSKTVLAGFYFLPKAQNFYSKNLGFIWPEEKD EECCCCCEEEEEEEECCCCCHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2005873; 7984428 [H]