| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
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The map label for this gene is 38234748
Identifier: 38234748
GI number: 38234748
Start: 2295148
End: 2296968
Strand: Direct
Name: 38234748
Synonym: DIP2207
Alternate gene names: NA
Gene position: 2295148-2296968 (Clockwise)
Preceding gene: 38234743
Following gene: 38234753
Centisome position: 92.23
GC content: 60.74
Gene sequence:
>1821_bases GTGCAGCAACGACGAAGGCTGATAAGCCGCACGCCGAAACCAGTCACAGCAGCCATCATGGCCATCACCTTGGTCGGCGC AGCAGCCGTAGGCGTAAGCACCAACAGCGTGCTATTTACCCAAGGCGACGCCATCGCCCCCATCAACCCAGAGCTGACCA CCTCCAGCCTTGCCGACGGCAACAACGTGCTGGTCACCGACCCAGCAATCGCCACCCAGGGCGAAGGCGAAGGCCCCAAA ACCGTCAAAGAATTCCACCGCGAACAACCCTTCTCACAGTTCGCACTCACCTGGAACGGCGAACGCGACATCGCAGCCTT CGTCCGTGGTCAACGCCCCGACGGCACTTGGACCGAATGGTTCGACACCGAACCTCTCGACTATGGATCAGACAACCCCA ACCATAAAAAGGGCACCGACCTGATCTACATCGAACCCACAACCACAGTGCAGGTATCCATCAGCGGCGTTGACGTCCTT GGCCCCGACGCAGCCAACTTGGACGCAGTCTTTATCGACGGCGGAACCTCCGATCTTCCCGAAAACGGCATCAACCTCAC CGCCGACTCCGACGGCATGCCCCGCGTCATCTCCCGCGCAGGCTGGGGTGCCGACGAATCCCTCCGCTGCTCCCGACCAG AATACGAAGACTCCACCGCAGCTATCGTCATCCACCACACCGCCGGATCCAACAACTACAGCCAAAAAGAATCCCCCGGC ATCATGCGCGGCATCTACAAATACCACGCACAAACCCTCGGCTGGTGCGACATCGGATACCACGCCCTCGCCGACAAATA CGGCAACCTCTTCGAAGGCCGCTACGGCGGATTGAACAAGAGCATCGTTGGCGCCCACGCAGGTGGCTTCAACTCCAACA CCTGGGCTATCTCCATGATGGGTAACTATGACGTAGTCCAGCCCCCACAAGCCATGATCAAATCCGTTGGTGAACTCGCC GGCTGGCGCGCCAAAGTCGCAGGTATCGACCCCAAGGGCTCCGACACCCACTACTCCGAAGGCTCCAGCTACACCTTCTA CCCCTACGGTCAAGCAGTACTCCTGCCCAACATCTTCGCCCACCGCGACGTAGGAAACACCGCCTGCCCAGGCCGATACG GATACGCCCAAATGGACAACATCCGCAACATCGCCAAGCAGAAATACGACTCGATCCGCTCCGGCTCCGGCGCGACAGCA CCCGCTGCACCGTCTACGCCATCAAAACCAGCGCCTGCACCAGCCGCTCCCGCAGCACCTTCTGCACCAGCCGCTCCCGC TGGCACTAATCCCATCGGGCTACTCAGCCAAGGCTCCACCCCTGCAAACGCAGGCTCCTTGGTCGGACTTGCCGTCGCAG CAGCCACCTCGCTCGGTCTGATCGGCAACCTTAACAACATTGGCGACGTCCCCGTCATCGGCGGGCTGAAACTCTCCCAG CTCCAGCCCATCATCGGCAAAATCGTTGAACTCCTTGGCAACAACGACATCTCCCGTGTATGGCGCGACGTAAACTCCTT CGCCGGCGCAGCCCTCGGCAACGCCCGCTCCCCCATCGCCCACTACGCCTCTGCCACCGGCACCCCCATCGACTACGCCC TCTTTGACAACGGCATCGTGATCAGCAACCCAGAAACCGGCACCAACGCCCTCTGGGGAACCATCGGCGACCTATGGGCA CAACAAGGCTTCGAAGCCGGCCCCCTAGGACTACCCACCAGCTCCGTCTTTGAAGTTGACGGCCTCCAGCGCGTGAACTT CCAACACGGCTACATCACCTTCAACCCAACAACAAGCGCCGTCGACATCCAGGTGCAGTAA
Upstream 100 bases:
>100_bases GTCTCAGGGGTTTCTTCTTGCCACTAGGTGCACTAGAGTTAACAAGGATTGTCTTTCTCCTCAGAAGACACACGCGCACA TCACATCGAGGGAGAACACA
Downstream 100 bases:
>100_bases CAAGCACAAGCTCGCCCCAGCTGGGGCGAGCTTTTTGTTTACCGATGGTATTCCGACAATGCGGCAGTGGTGCCAGCTTA AAGAAAACGGAATGAAGAGT
Product: hypothetical protein
Products: NA
Alternate protein names: N-Acetylmuramoyl-L-Alanine Amidase; LGFP Repeat-Containing Protein; N-Acetylmuramoyl-L-Alanine Amidase Domain Protein; Twin-Arginine Translocation Pathway Signal; LOW QUALITY PROTEIN Secreted Protein; N-Acetymuramoyl-L-Alanine Amidase; Bifunctional Protein N-Acetylmuramoyl-L-Alanine Amidase; N-Acetylmuramyl-L-Alanine Amidase; FG-GAP Repeat-Containing Protein; LysM Domain-Containing Protein; N-Acetylmuramoyl-L-Alanine Amidase Lytc; LGFP Repeat Protein
Number of amino acids: Translated: 606; Mature: 606
Protein sequence:
>606_residues MQQRRRLISRTPKPVTAAIMAITLVGAAAVGVSTNSVLFTQGDAIAPINPELTTSSLADGNNVLVTDPAIATQGEGEGPK TVKEFHREQPFSQFALTWNGERDIAAFVRGQRPDGTWTEWFDTEPLDYGSDNPNHKKGTDLIYIEPTTTVQVSISGVDVL GPDAANLDAVFIDGGTSDLPENGINLTADSDGMPRVISRAGWGADESLRCSRPEYEDSTAAIVIHHTAGSNNYSQKESPG IMRGIYKYHAQTLGWCDIGYHALADKYGNLFEGRYGGLNKSIVGAHAGGFNSNTWAISMMGNYDVVQPPQAMIKSVGELA GWRAKVAGIDPKGSDTHYSEGSSYTFYPYGQAVLLPNIFAHRDVGNTACPGRYGYAQMDNIRNIAKQKYDSIRSGSGATA PAAPSTPSKPAPAPAAPAAPSAPAAPAGTNPIGLLSQGSTPANAGSLVGLAVAAATSLGLIGNLNNIGDVPVIGGLKLSQ LQPIIGKIVELLGNNDISRVWRDVNSFAGAALGNARSPIAHYASATGTPIDYALFDNGIVISNPETGTNALWGTIGDLWA QQGFEAGPLGLPTSSVFEVDGLQRVNFQHGYITFNPTTSAVDIQVQ
Sequences:
>Translated_606_residues MQQRRRLISRTPKPVTAAIMAITLVGAAAVGVSTNSVLFTQGDAIAPINPELTTSSLADGNNVLVTDPAIATQGEGEGPK TVKEFHREQPFSQFALTWNGERDIAAFVRGQRPDGTWTEWFDTEPLDYGSDNPNHKKGTDLIYIEPTTTVQVSISGVDVL GPDAANLDAVFIDGGTSDLPENGINLTADSDGMPRVISRAGWGADESLRCSRPEYEDSTAAIVIHHTAGSNNYSQKESPG IMRGIYKYHAQTLGWCDIGYHALADKYGNLFEGRYGGLNKSIVGAHAGGFNSNTWAISMMGNYDVVQPPQAMIKSVGELA GWRAKVAGIDPKGSDTHYSEGSSYTFYPYGQAVLLPNIFAHRDVGNTACPGRYGYAQMDNIRNIAKQKYDSIRSGSGATA PAAPSTPSKPAPAPAAPAAPSAPAAPAGTNPIGLLSQGSTPANAGSLVGLAVAAATSLGLIGNLNNIGDVPVIGGLKLSQ LQPIIGKIVELLGNNDISRVWRDVNSFAGAALGNARSPIAHYASATGTPIDYALFDNGIVISNPETGTNALWGTIGDLWA QQGFEAGPLGLPTSSVFEVDGLQRVNFQHGYITFNPTTSAVDIQVQ >Mature_606_residues MQQRRRLISRTPKPVTAAIMAITLVGAAAVGVSTNSVLFTQGDAIAPINPELTTSSLADGNNVLVTDPAIATQGEGEGPK TVKEFHREQPFSQFALTWNGERDIAAFVRGQRPDGTWTEWFDTEPLDYGSDNPNHKKGTDLIYIEPTTTVQVSISGVDVL GPDAANLDAVFIDGGTSDLPENGINLTADSDGMPRVISRAGWGADESLRCSRPEYEDSTAAIVIHHTAGSNNYSQKESPG IMRGIYKYHAQTLGWCDIGYHALADKYGNLFEGRYGGLNKSIVGAHAGGFNSNTWAISMMGNYDVVQPPQAMIKSVGELA GWRAKVAGIDPKGSDTHYSEGSSYTFYPYGQAVLLPNIFAHRDVGNTACPGRYGYAQMDNIRNIAKQKYDSIRSGSGATA PAAPSTPSKPAPAPAAPAAPSAPAAPAGTNPIGLLSQGSTPANAGSLVGLAVAAATSLGLIGNLNNIGDVPVIGGLKLSQ LQPIIGKIVELLGNNDISRVWRDVNSFAGAALGNARSPIAHYASATGTPIDYALFDNGIVISNPETGTNALWGTIGDLWA QQGFEAGPLGLPTSSVFEVDGLQRVNFQHGYITFNPTTSAVDIQVQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4827036, Length=161, Percent_Identity=33.5403726708075, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI16418405, Length=118, Percent_Identity=33.8983050847458, Blast_Score=67, Evalue=5e-11, Organism=Drosophila melanogaster, GI24651867, Length=178, Percent_Identity=33.7078651685393, Blast_Score=79, Evalue=1e-14, Organism=Drosophila melanogaster, GI24645946, Length=235, Percent_Identity=27.6595744680851, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI21356551, Length=235, Percent_Identity=27.6595744680851, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI24645949, Length=235, Percent_Identity=27.6595744680851, Blast_Score=74, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63711; Mature: 63711
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQQRRRLISRTPKPVTAAIMAITLVGAAAVGVSTNSVLFTQGDAIAPINPELTTSSLADG CCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCCCCCCHHCCCC NNVLVTDPAIATQGEGEGPKTVKEFHREQPFSQFALTWNGERDIAAFVRGQRPDGTWTEW CEEEEECCCEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCC FDTEPLDYGSDNPNHKKGTDLIYIEPTTTVQVSISGVDVLGPDAANLDAVFIDGGTSDLP CCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCEEEECCCCCCCCEEEECCCCCCCC ENGINLTADSDGMPRVISRAGWGADESLRCSRPEYEDSTAAIVIHHTAGSNNYSQKESPG CCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCH IMRGIYKYHAQTLGWCDIGYHALADKYGNLFEGRYGGLNKSIVGAHAGGFNSNTWAISMM HHHHHHHHHHHHCCCHHCCHHHHHHHHCCHHCCCCCCCCCCEEEECCCCCCCCCEEEEEE GNYDVVQPPQAMIKSVGELAGWRAKVAGIDPKGSDTHYSEGSSYTFYPYGQAVLLPNIFA CCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEECCCCEEECCCHHH HRDVGNTACPGRYGYAQMDNIRNIAKQKYDSIRSGSGATAPAAPSTPSKPAPAPAAPAAP HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC SAPAAPAGTNPIGLLSQGSTPANAGSLVGLAVAAATSLGLIGNLNNIGDVPVIGGLKLSQ CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHH LQPIIGKIVELLGNNDISRVWRDVNSFAGAALGNARSPIAHYASATGTPIDYALFDNGIV HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEEECCCEE ISNPETGTNALWGTIGDLWAQQGFEAGPLGLPTSSVFEVDGLQRVNFQHGYITFNPTTSA EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEEECCEEEECCCCCE VDIQVQ EEEEEC >Mature Secondary Structure MQQRRRLISRTPKPVTAAIMAITLVGAAAVGVSTNSVLFTQGDAIAPINPELTTSSLADG CCHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCEECCCCCCCCCHHCCCC NNVLVTDPAIATQGEGEGPKTVKEFHREQPFSQFALTWNGERDIAAFVRGQRPDGTWTEW CEEEEECCCEECCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCHHHHCCCCCCCCCCCC FDTEPLDYGSDNPNHKKGTDLIYIEPTTTVQVSISGVDVLGPDAANLDAVFIDGGTSDLP CCCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCEEEECCCCCCCCEEEECCCCCCCC ENGINLTADSDGMPRVISRAGWGADESLRCSRPEYEDSTAAIVIHHTAGSNNYSQKESPG CCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCH IMRGIYKYHAQTLGWCDIGYHALADKYGNLFEGRYGGLNKSIVGAHAGGFNSNTWAISMM HHHHHHHHHHHHCCCHHCCHHHHHHHHCCHHCCCCCCCCCCEEEECCCCCCCCCEEEEEE GNYDVVQPPQAMIKSVGELAGWRAKVAGIDPKGSDTHYSEGSSYTFYPYGQAVLLPNIFA CCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEEECCCCEEECCCHHH HRDVGNTACPGRYGYAQMDNIRNIAKQKYDSIRSGSGATAPAAPSTPSKPAPAPAAPAAP HCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC SAPAAPAGTNPIGLLSQGSTPANAGSLVGLAVAAATSLGLIGNLNNIGDVPVIGGLKLSQ CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCHHH LQPIIGKIVELLGNNDISRVWRDVNSFAGAALGNARSPIAHYASATGTPIDYALFDNGIV HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCEEEEEECCCEE ISNPETGTNALWGTIGDLWAQQGFEAGPLGLPTSSVFEVDGLQRVNFQHGYITFNPTTSA EECCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCEEEEEECCEEEECCCCCE VDIQVQ EEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA