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The map label for this gene is ylbH [H]

Identifier: 38233728

GI number: 38233728

Start: 1124164

End: 1124742

Strand: Direct

Name: ylbH [H]

Synonym: DIP1138

Alternate gene names: 38233728

Gene position: 1124164-1124742 (Clockwise)

Preceding gene: 38233727

Following gene: 38233729

Centisome position: 45.17

GC content: 50.09

Gene sequence:

>579_bases
ATGACCCGTATCATTTCAGGTGAAGCCCGTGGGCGAACTATTAAAGTTCCAGAGCACGGGACGAGGCCCACATCAGATAG
AGCACGTGAAGGCCTATTTTCCTCACTTCAAGTACGTTTTGGTTTTGCTGGTGCACGTGTCCTTGATTTATTTGCGGGAT
CTGGCGCATTGGGGCTAGAAGCTGCTAGCCGAGGTGCCGAGTCGGTTGTTTTGGTAGAAAACAACCCGAAGGCTGTCGCT
GTCATCCGTCATAATATTGCCGTTGTTGGACACCCTCACGTTGATGTTGTAGAGATGAAGGCATCCACTTATGTCGCTTC
AGCACCGAAGAATCATTTCGATATGGTGTTAGCAGACCCACCCTATGATCTTGACGATCAGGCAGTCGTCGAAATGCTTC
ATGCACTCATTCCTACGCTGGTAGATGGGGCAGCAGTAGTGGTTGAACGACACCGTGATTCTTCTGAAACGGCATGGCCA
GCATGCTTCGTGCCTACCACTCAGAAGCTAAAAAAACGCACATTCGGGATTGCACGAATGGACATGGCCGTTTTCCATGC
TGAGCTCGTAGAGGAGTAA

Upstream 100 bases:

>100_bases
TCGCGCCGGGGCCAGGTATCGTTGCTGAAATAACGAGTAGCGATTTTGACGATGTTGTTGGGGGAGACGTAATCCTCCGA
GTCGTGAGTCAGGAGAAGCC

Downstream 100 bases:

>100_bases
AAACATCATGCGTAAAGCAGTGTGCCCAGGATCTTTTGACCCAGTGACTATGGGGCATCTTGACATCATCGGAAGGGCGG
CCCAGCAATACGACGAGGTC

Product: putative DNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MTRIISGEARGRTIKVPEHGTRPTSDRAREGLFSSLQVRFGFAGARVLDLFAGSGALGLEAASRGAESVVLVENNPKAVA
VIRHNIAVVGHPHVDVVEMKASTYVASAPKNHFDMVLADPPYDLDDQAVVEMLHALIPTLVDGAAVVVERHRDSSETAWP
ACFVPTTQKLKKRTFGIARMDMAVFHAELVEE

Sequences:

>Translated_192_residues
MTRIISGEARGRTIKVPEHGTRPTSDRAREGLFSSLQVRFGFAGARVLDLFAGSGALGLEAASRGAESVVLVENNPKAVA
VIRHNIAVVGHPHVDVVEMKASTYVASAPKNHFDMVLADPPYDLDDQAVVEMLHALIPTLVDGAAVVVERHRDSSETAWP
ACFVPTTQKLKKRTFGIARMDMAVFHAELVEE
>Mature_191_residues
TRIISGEARGRTIKVPEHGTRPTSDRAREGLFSSLQVRFGFAGARVLDLFAGSGALGLEAASRGAESVVLVENNPKAVAV
IRHNIAVVGHPHVDVVEMKASTYVASAPKNHFDMVLADPPYDLDDQAVVEMLHALIPTLVDGAAVVVERHRDSSETAWPA
CFVPTTQKLKKRTFGIARMDMAVFHAELVEE

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=121, Percent_Identity=41.3223140495868, Blast_Score=80, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20779; Mature: 20648

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: PS00579 RIBOSOMAL_L29 ; PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRIISGEARGRTIKVPEHGTRPTSDRAREGLFSSLQVRFGFAGARVLDLFAGSGALGLE
CCEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCHH
AASRGAESVVLVENNPKAVAVIRHNIAVVGHPHVDVVEMKASTYVASAPKNHFDMVLADP
HHCCCCCEEEEEECCCCEEEEEEECEEEEECCCCEEEEEECCEEEECCCCCCCEEEEECC
PYDLDDQAVVEMLHALIPTLVDGAAVVVERHRDSSETAWPACFVPTTQKLKKRTFGIARM
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCHHHHHHHHCCHHHH
DMAVFHAELVEE
HHHHHHHHHHCC
>Mature Secondary Structure 
TRIISGEARGRTIKVPEHGTRPTSDRAREGLFSSLQVRFGFAGARVLDLFAGSGALGLE
CEEECCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHEEECCCHHHHHHHHCCCCCCCHH
AASRGAESVVLVENNPKAVAVIRHNIAVVGHPHVDVVEMKASTYVASAPKNHFDMVLADP
HHCCCCCEEEEEECCCCEEEEEEECEEEEECCCCEEEEEECCEEEECCCCCCCEEEEECC
PYDLDDQAVVEMLHALIPTLVDGAAVVVERHRDSSETAWPACFVPTTQKLKKRTFGIARM
CCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEECCCHHHHHHHHCCHHHH
DMAVFHAELVEE
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]