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The map label for this gene is yrdC [C]

Identifier: 38233637

GI number: 38233637

Start: 1025435

End: 1026085

Strand: Direct

Name: yrdC [C]

Synonym: DIP1043

Alternate gene names: 38233637

Gene position: 1025435-1026085 (Clockwise)

Preceding gene: 38233636

Following gene: 38233638

Centisome position: 41.2

GC content: 54.22

Gene sequence:

>651_bases
GTGGGCAGAATCTTTGACTGCAGTGACGCGGAAACTCGTGAAGCTGGCCTCCAGCAAGCCATCAGTACTGTAAAAGATGG
CCGACTAGTGGTCATTCCCACCGATACGCTTTATGGAATCGGTTGCGATGCTTTTGATAACACCGCAGTAGCAAAACTCC
TCGAAACGAAGCACCGTGGCCCCGATATGCCAGTACCAGTGTTGGTTGGTAGCTGGGATACGGCTCGTGGATTGGTGCAC
AGCTATTCCGATCAATTGCGAACACTCATTGAGGCGTTTTGGCCAGGTGGGCTGAGCATCGTTGTGGAGCAAGCTCCAAG
TTTGCAGTGGAACCTCGGTGATACCCGCGGCACTGTGATGCTGCGGATGCCGCTGCACCCAGTTGCCATTGAACTTTTGC
GAGAAACAGGCCCGATGGCGGTATCTTCTGCGAACATTTCTGGCCAGACTCCAGCCACCACTGCTCAAGAAGCACAGCGT
CAGTTGGGGGACAACGTAAGCGTTTATCTTGACGCTGGTGAGACGCCCGTAGGAACTGCTTCGACAATCATTGACCTGTC
CGGTGATCATCCGCGAATTCTTCGTGAAGGCGCGATCTCAGCGGAACGAGTCGCAGAAGTGTTGGAAGTCGACGTGGAGA
CGCTTCGATAG

Upstream 100 bases:

>100_bases
CTTCAAATGCATATCTTTGTTTTGAAGCGATGCAGAACAATTAGCCTCCCCCGTAGCATCGAGGGACCGAAAACTATCGA
GAAGAGAAAGACTTTCGAAC

Downstream 100 bases:

>100_bases
ATGGGTGCTGGTGCCGGTGTTGCCGGTGTGCCCATGCGTGAGCTTGCACTGATCATTCTCGTTGCAGCTTCGCTGACGTT
TTTGACCACGGGGATAGTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 215

Protein sequence:

>216_residues
MGRIFDCSDAETREAGLQQAISTVKDGRLVVIPTDTLYGIGCDAFDNTAVAKLLETKHRGPDMPVPVLVGSWDTARGLVH
SYSDQLRTLIEAFWPGGLSIVVEQAPSLQWNLGDTRGTVMLRMPLHPVAIELLRETGPMAVSSANISGQTPATTAQEAQR
QLGDNVSVYLDAGETPVGTASTIIDLSGDHPRILREGAISAERVAEVLEVDVETLR

Sequences:

>Translated_216_residues
MGRIFDCSDAETREAGLQQAISTVKDGRLVVIPTDTLYGIGCDAFDNTAVAKLLETKHRGPDMPVPVLVGSWDTARGLVH
SYSDQLRTLIEAFWPGGLSIVVEQAPSLQWNLGDTRGTVMLRMPLHPVAIELLRETGPMAVSSANISGQTPATTAQEAQR
QLGDNVSVYLDAGETPVGTASTIIDLSGDHPRILREGAISAERVAEVLEVDVETLR
>Mature_215_residues
GRIFDCSDAETREAGLQQAISTVKDGRLVVIPTDTLYGIGCDAFDNTAVAKLLETKHRGPDMPVPVLVGSWDTARGLVHS
YSDQLRTLIEAFWPGGLSIVVEQAPSLQWNLGDTRGTVMLRMPLHPVAIELLRETGPMAVSSANISGQTPATTAQEAQRQ
LGDNVSVYLDAGETPVGTASTIIDLSGDHPRILREGAISAERVAEVLEVDVETLR

Specific function: Binds Preferentially To Double-Stranded RNA. [C]

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain [H]

Homologues:

Organism=Escherichia coli, GI2367210, Length=147, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17537239, Length=214, Percent_Identity=30.3738317757009, Blast_Score=72, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6321269, Length=224, Percent_Identity=29.4642857142857, Blast_Score=87, Evalue=3e-18,
Organism=Drosophila melanogaster, GI78707274, Length=183, Percent_Identity=32.7868852459016, Blast_Score=76, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017945
- InterPro:   IPR004388
- InterPro:   IPR006070 [H]

Pfam domain/function: PF01300 Sua5_yciO_yrdC [H]

EC number: NA

Molecular weight: Translated: 23174; Mature: 23042

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRIFDCSDAETREAGLQQAISTVKDGRLVVIPTDTLYGIGCDAFDNTAVAKLLETKHRG
CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHCCC
PDMPVPVLVGSWDTARGLVHSYSDQLRTLIEAFWPGGLSIVVEQAPSLQWNLGDTRGTVM
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCEEE
LRMPLHPVAIELLRETGPMAVSSANISGQTPATTAQEAQRQLGDNVSVYLDAGETPVGTA
EEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC
STIIDLSGDHPRILREGAISAERVAEVLEVDVETLR
EEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
GRIFDCSDAETREAGLQQAISTVKDGRLVVIPTDTLYGIGCDAFDNTAVAKLLETKHRG
CCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCCHHHHHHHHHHHCCC
PDMPVPVLVGSWDTARGLVHSYSDQLRTLIEAFWPGGLSIVVEQAPSLQWNLGDTRGTVM
CCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCEEE
LRMPLHPVAIELLRETGPMAVSSANISGQTPATTAQEAQRQLGDNVSVYLDAGETPVGTA
EEECCHHHHHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCC
STIIDLSGDHPRILREGAISAERVAEVLEVDVETLR
EEEEECCCCCCHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]