| Definition | Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome. |
|---|---|
| Accession | NC_002935 |
| Length | 2,488,635 |
Click here to switch to the map view.
The map label for this gene is regX3 [H]
Identifier: 38233005
GI number: 38233005
Start: 358447
End: 359127
Strand: Direct
Name: regX3 [H]
Synonym: DIP0391
Alternate gene names: 38233005
Gene position: 358447-359127 (Clockwise)
Preceding gene: 38233004
Following gene: 38233007
Centisome position: 14.4
GC content: 57.42
Gene sequence:
>681_bases ATGACCTCTATCTTGTTGGTTGAAGACGAAGAGTCGCTAGCCGATCCCCTCGCGTTCTTGTTGCGCAAGGAAGGTTTTGA TGTAGTAATCGCCGGTGATGGCCCCAGCGCCTTGGTGGAGTTTGATCGCAACGCCATCGATATTGTGCTGCTTGACCTCA TGCTTCCTGGCATGTCGGGTACGGATGTGTGCAAGCGCCTGCGAGCAGTATCCTCAGTCCCCGTGATCATGGTGACGGCA CGGGACTCGGAGATCGACAAGGTGGTAGGCCTAGAACTCGGTGCCGACGACTACGTGACCAAACCATATTCTTCTCGCGA GCTCATTGCCCGAATCCGTGCCGTGCTGCGTCGCGGCGGGGAGACAATCGAAGAATCGGATGAGATCCTCGGCAGCGGCC GAATCCACATGGATGTGGAACGCCACACCGTGACCGTCGACGGCGAAGAGATCTCCATGCCGCTAAAAGAATTCGACCTG TTGGAATACCTCATGCGCAACTCGGGGCGCGTGCTCACCCGTGGCCAGCTCATCGACCGCGTGTGGGGTGCCGACTACGT AGGGGATACCAAAACCTTGGATGTGCACATTAAACGCCTGCGCTCCAAGATCGAACCAGAACCCTCCGCGCCATGCCACG TGATTACTGTGCGCGGTCTGGGCTACAAGTACGAAGACTAG
Upstream 100 bases:
>100_bases ATGTCACGCTGTGGTCGCGTCCTGGAACCGGTTCCACGTTTACGATCGAGCTTCCGATCTATCATGAAACTGACACGGGT CGCCGAAAGGATAAGAACTG
Downstream 100 bases:
>100_bases CTGGGTGCGGGGCTAGCGGGATACCTGCTTTTTGGCGCGCCGCGCAGTGTTGCGCCAACACCTCGTAGGAGGCATCGCCC ATCAGCGCCCGCAGCTCCGC
Product: putative two component system response regulator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 226; Mature: 225
Protein sequence:
>226_residues MTSILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGTDVCKRLRAVSSVPVIMVTA RDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGETIEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDL LEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGYKYED
Sequences:
>Translated_226_residues MTSILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGTDVCKRLRAVSSVPVIMVTA RDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGETIEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDL LEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGYKYED >Mature_225_residues TSILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSGTDVCKRLRAVSSVPVIMVTAR DSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGGETIEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDLL EYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGYKYED
Specific function: Part of the two-component regulatory system senX3/regX3. Once phosphorylated by senX3, activates the expression of several operons/genes involved in phosphate assimilation and metabolism, such as pstSCAB, phnDCE, and phoA [H]
COG id: COG0745
COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1786599, Length=225, Percent_Identity=43.1111111111111, Blast_Score=166, Evalue=1e-42, Organism=Escherichia coli, GI1789809, Length=227, Percent_Identity=35.6828193832599, Blast_Score=149, Evalue=1e-37, Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=37.0535714285714, Blast_Score=148, Evalue=3e-37, Organism=Escherichia coli, GI1788394, Length=222, Percent_Identity=37.3873873873874, Blast_Score=147, Evalue=4e-37, Organism=Escherichia coli, GI1790860, Length=221, Percent_Identity=36.1990950226244, Blast_Score=147, Evalue=6e-37, Organism=Escherichia coli, GI87082012, Length=221, Percent_Identity=37.10407239819, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI1786784, Length=224, Percent_Identity=37.9464285714286, Blast_Score=145, Evalue=2e-36, Organism=Escherichia coli, GI2367329, Length=227, Percent_Identity=39.2070484581498, Blast_Score=145, Evalue=3e-36, Organism=Escherichia coli, GI1790863, Length=230, Percent_Identity=34.7826086956522, Blast_Score=141, Evalue=3e-35, Organism=Escherichia coli, GI1789402, Length=220, Percent_Identity=36.3636363636364, Blast_Score=126, Evalue=1e-30, Organism=Escherichia coli, GI1787229, Length=225, Percent_Identity=34.6666666666667, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1790552, Length=221, Percent_Identity=36.1990950226244, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1787375, Length=224, Percent_Identity=33.4821428571429, Blast_Score=117, Evalue=5e-28, Organism=Escherichia coli, GI145693140, Length=233, Percent_Identity=32.1888412017167, Blast_Score=113, Evalue=1e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011006 - InterPro: IPR001867 - InterPro: IPR001789 - InterPro: IPR011991 [H]
Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]
EC number: NA
Molecular weight: Translated: 25127; Mature: 24996
Theoretical pI: Translated: 4.56; Mature: 4.56
Prosite motif: PS50110 RESPONSE_REGULATORY
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSG CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCHHHEECCCCHHHHHEEEHHCCCCCH TDVCKRLRAVSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGG HHHHHHHHHHCCCCEEEEEECCCCCHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC ETIEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDR CCHHHHHHHHCCCEEEEEEEEEEEEECCHHHCCCHHHHHHHHHHHHCCCCEEEHHHHHHH VWGADYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGYKYED HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC >Mature Secondary Structure TSILLVEDEESLADPLAFLLRKEGFDVVIAGDGPSALVEFDRNAIDIVLLDLMLPGMSG CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCHHHEECCCCHHHHHEEEHHCCCCCH TDVCKRLRAVSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSSRELIARIRAVLRRGG HHHHHHHHHHCCCCEEEEEECCCCCHHEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCC ETIEESDEILGSGRIHMDVERHTVTVDGEEISMPLKEFDLLEYLMRNSGRVLTRGQLIDR CCHHHHHHHHCCCEEEEEEEEEEEEECCHHHCCCHHHHHHHHHHHHCCCCEEEHHHHHHH VWGADYVGDTKTLDVHIKRLRSKIEPEPSAPCHVITVRGLGYKYED HHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA