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The map label for this gene is deoR [H]

Identifier: 38232890

GI number: 38232890

Start: 230521

End: 231552

Strand: Direct

Name: deoR [H]

Synonym: DIP0267

Alternate gene names: 38232890

Gene position: 230521-231552 (Clockwise)

Preceding gene: 38232884

Following gene: 38232891

Centisome position: 9.26

GC content: 54.55

Gene sequence:

>1032_bases
ATGAATCCCGTCTCATGCGCTAGGTATCCCACTATGTGGAACATGTTGTGGGGTGTGTCGTGGTTGGGGGTGGAGTGGGG
TAAAAATGTACATATGATTGACGCCCGCGATTGCCTAGCACTTGATGCTGCCAAACTTTATTACGTAACAGGTTTGGGTC
AGGCACAGGTCGCTAAGGAGCTGGGGATTTCTCGTCCTACAGTATCCAAGCTGCTATCGCATGCTCGTGATAAAGGTTTT
GTCACCATCTCCCTGAATGACCCTCGCGAGGTTGCAGGTGGGTACGTCGAAAAGCTTTGTGCTCGCTATGGGCTTGCCGA
TGTCCGCGTCGTACAATCCCCTGCAATGGGGCGGGGGCTGACTGGCGAGCTGGGTAATGCCGGTGCAGCGCTGCTGGAAG
AGGTTGTAAAGGACGGTATGACGGTGGGTGTGTCGTGGGGTGACACGATGCTGGCCGTTTCTGAGCATCTGCGTACCTTG
CCCTTGGTGGATGTAAAGGTGGTGCAACTTAAAGGCGGGCACTCGCATACTGCACGCAACACTAACGACATGGTGACGCT
GACGCGCTTCTCGCGAGCTCTGAATGCGGAAATGATGATGTTGCCGCTGCCTGTCATTCTTGATAGCAAAGAAGCTAAAG
AGCTGGTAGTAAAAGATCGACATATTGCGTCCATGCTGAACCTGGGGGCGCATTGTGACGTTGCTGTGTTTACAGTTGGG
GCGGTAAAGTCGGAAAGTTTGCTGCTTAACTTGGGGTATTTGTCGCCTAGTGAGCAGGCTCGCTTGATGGAGCATGCGGT
AGGTGATGTGTGCTCGCGCTTTTATGATGCTCAAGGCGAGGTTGCGGACCCTGATATTGATGCTCGCACAGTGGGAATAT
CGCTGGCAGATTTGAAGAAGCGGCCTGTACGGGTGCTGGTAGCGGGCGGTTTGGAGAAGGCGCCGGCGATTGAAGCTGCC
TTGCGTACCGGTGTGGCGACCCATGTGGTGATTGATCATGCTACGGCGCAGCGCGTGGTAGAGATGGCGTAG

Upstream 100 bases:

>100_bases
CTCCGCGACGGGGAGCCGGCTGTGTGTAAGGGACGTTAAGCCTGTGACCCGCCGCGGCGAAGAAGGAGAAGATTCGCGCG
ATTCATGTGAAGTAGCATAC

Downstream 100 bases:

>100_bases
TGAAGATGTGGCGCTGTTAATGCGGTCGAATACTAGTGCCATTTTTATTTCCCCCTGTGTTTGATTGGCTGATTTTGAGT
GTAGTCATAGTGCTATAACA

Product: putative regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MNPVSCARYPTMWNMLWGVSWLGVEWGKNVHMIDARDCLALDAAKLYYVTGLGQAQVAKELGISRPTVSKLLSHARDKGF
VTISLNDPREVAGGYVEKLCARYGLADVRVVQSPAMGRGLTGELGNAGAALLEEVVKDGMTVGVSWGDTMLAVSEHLRTL
PLVDVKVVQLKGGHSHTARNTNDMVTLTRFSRALNAEMMMLPLPVILDSKEAKELVVKDRHIASMLNLGAHCDVAVFTVG
AVKSESLLLNLGYLSPSEQARLMEHAVGDVCSRFYDAQGEVADPDIDARTVGISLADLKKRPVRVLVAGGLEKAPAIEAA
LRTGVATHVVIDHATAQRVVEMA

Sequences:

>Translated_343_residues
MNPVSCARYPTMWNMLWGVSWLGVEWGKNVHMIDARDCLALDAAKLYYVTGLGQAQVAKELGISRPTVSKLLSHARDKGF
VTISLNDPREVAGGYVEKLCARYGLADVRVVQSPAMGRGLTGELGNAGAALLEEVVKDGMTVGVSWGDTMLAVSEHLRTL
PLVDVKVVQLKGGHSHTARNTNDMVTLTRFSRALNAEMMMLPLPVILDSKEAKELVVKDRHIASMLNLGAHCDVAVFTVG
AVKSESLLLNLGYLSPSEQARLMEHAVGDVCSRFYDAQGEVADPDIDARTVGISLADLKKRPVRVLVAGGLEKAPAIEAA
LRTGVATHVVIDHATAQRVVEMA
>Mature_343_residues
MNPVSCARYPTMWNMLWGVSWLGVEWGKNVHMIDARDCLALDAAKLYYVTGLGQAQVAKELGISRPTVSKLLSHARDKGF
VTISLNDPREVAGGYVEKLCARYGLADVRVVQSPAMGRGLTGELGNAGAALLEEVVKDGMTVGVSWGDTMLAVSEHLRTL
PLVDVKVVQLKGGHSHTARNTNDMVTLTRFSRALNAEMMMLPLPVILDSKEAKELVVKDRHIASMLNLGAHCDVAVFTVG
AVKSESLLLNLGYLSPSEQARLMEHAVGDVCSRFYDAQGEVADPDIDARTVGISLADLKKRPVRVLVAGGLEKAPAIEAA
LRTGVATHVVIDHATAQRVVEMA

Specific function: Negative regulator of the dra-nupC-pdp operon. DeoR binds cooperatively to the operator DNA, which consists of a palindrome and a direct repeat sequence located 3' to the palindrome [H]

COG id: COG2390

COG function: function code K; Transcriptional regulator, contains sigma factor-related N-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sorC transcriptional regulatory family [H]

Homologues:

Organism=Escherichia coli, GI87082414, Length=306, Percent_Identity=30.3921568627451, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1787791, Length=297, Percent_Identity=27.9461279461279, Blast_Score=105, Evalue=3e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR007630
- InterPro:   IPR007324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04545 Sigma70_r4; PF04198 Sugar-bind [H]

EC number: NA

Molecular weight: Translated: 36916; Mature: 36916

Theoretical pI: Translated: 7.06; Mature: 7.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPVSCARYPTMWNMLWGVSWLGVEWGKNVHMIDARDCLALDAAKLYYVTGLGQAQVAKE
CCCCCCCCCCHHHHHHHCCCEEEHCCCCCEEEEECCHHHHHCCCEEEEEECCCHHHHHHH
LGISRPTVSKLLSHARDKGFVTISLNDPREVAGGYVEKLCARYGLADVRVVQSPAMGRGL
HCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
TGELGNAGAALLEEVVKDGMTVGVSWGDTMLAVSEHLRTLPLVDVKVVQLKGGHSHTARN
CCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC
TNDMVTLTRFSRALNAEMMMLPLPVILDSKEAKELVVKDRHIASMLNLGAHCDVAVFTVG
CCCEEEHHHHHHHHCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
AVKSESLLLNLGYLSPSEQARLMEHAVGDVCSRFYDAQGEVADPDIDARTVGISLADLKK
CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHCC
RPVRVLVAGGLEKAPAIEAALRTGVATHVVIDHATAQRVVEMA
CCEEEEEECCCCCCHHHHHHHHCCCEEEEEEEHHHHHHHHHCC
>Mature Secondary Structure
MNPVSCARYPTMWNMLWGVSWLGVEWGKNVHMIDARDCLALDAAKLYYVTGLGQAQVAKE
CCCCCCCCCCHHHHHHHCCCEEEHCCCCCEEEEECCHHHHHCCCEEEEEECCCHHHHHHH
LGISRPTVSKLLSHARDKGFVTISLNDPREVAGGYVEKLCARYGLADVRVVQSPAMGRGL
HCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCC
TGELGNAGAALLEEVVKDGMTVGVSWGDTMLAVSEHLRTLPLVDVKVVQLKGGHSHTARN
CCCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCC
TNDMVTLTRFSRALNAEMMMLPLPVILDSKEAKELVVKDRHIASMLNLGAHCDVAVFTVG
CCCEEEHHHHHHHHCCCEEEECCCEEECCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEC
AVKSESLLLNLGYLSPSEQARLMEHAVGDVCSRFYDAQGEVADPDIDARTVGISLADLKK
CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEHHHHCC
RPVRVLVAGGLEKAPAIEAALRTGVATHVVIDHATAQRVVEMA
CCEEEEEECCCCCCHHHHHHHHCCCEEEEEEEHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8550462; 8867804; 9384377; 10074062; 10714997 [H]