BacMap

Definition	Corynebacterium diphtheriae NCTC 13129 chromosome, complete genome.
Accession	NC_002935
Length	2,488,635

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The map label for this gene is ydfG [C]

Identifier: 38232763

GI number: 38232763

Start: 114529

End: 115257

Strand: Direct

Name: ydfG [C]

Synonym: DIP0135

Alternate gene names: 38232763

Gene position: 114529-115257 (Clockwise)

Preceding gene: 38232762

Following gene: 38232764

Centisome position: 4.6

GC content: 54.6

Gene sequence:

>729_bases
ATGTCGAATCAACATGTGGTTAATGAGAAAAAGATTGCGGTTGTTACCGGTGCCTCCTCTGGCATTGGTGAGGCTGCCGC
GCGTGCTCTTGCGGCCGATGGTTGGCATGTGATCGTAGCGGCACGGCGCAAACACCTGTTGGATGTTCTGGCTGCTGATA
TTGCCGGTACAGCGATTGAACTTGATGTGACAAGCGATGAGTCCGTGGCTGCGTTTGCGGCGCAGATTCCGCGATGTGAC
CTGCTGGTGAATAACGCGGGAGGCGCATTAGGGCTTGATCCCATTGCCCAAGCAAACCTTGAGGATTGGCAGTGGATGTA
TAACACCAACGTGTTAGGCACATTGCGGGTAACGAGGGCTCTGCTTGATGCGTTGAGCAGCAGTAATGGTCTGATTATCA
ACATCAGTTCGATCGCCGGTATCGCGCCCTATGCCGGTGGCGCTGGCTATAACGCTGCGAAGTTCGGGGTATCGGCCATG
GATAAGGTCATGCGCATTGAGTTCCAAGAACGAGGTATCCGTGTGGCAGAAATCAACCCAGGTCGGGTGCATACTGATTT
TTCGCTGGTGCGGTTTAAAGGTGACCAGCAGGCAGCCAATGCCGTCTATGAGGGCAAGGTGAATCTCACCGCGGGCGATA
TTGCGGAAACGATCCGGTGGGTGGCCTCGTTGCCTACACACGTCAACATTGACCGGCTTGTGATCACCCCACAGGATCAG
GTGATCTAG

Upstream 100 bases:

>100_bases
TTTGTCGGGCCTACCACGTGCTATGCCACGATGCAGGCGGTGGGGATGGTAGATGATCGCCCCCGTGGCGCGTCGCCACT
TCTCGTGGAAAGCTAGTGCC

Downstream 100 bases:

>100_bases
CTCTATCGTTATGACTCTTTCGGCGTTTGGTGCACTAGCTGCCGTGTGGGCTGCAGATTGTGCGCATGGATTGATCTTGG
TGCGGGCGTAATTTTCCTCG

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 242; Mature: 241

Protein sequence:

>242_residues
MSNQHVVNEKKIAVVTGASSGIGEAAARALAADGWHVIVAARRKHLLDVLAADIAGTAIELDVTSDESVAAFAAQIPRCD
LLVNNAGGALGLDPIAQANLEDWQWMYNTNVLGTLRVTRALLDALSSSNGLIINISSIAGIAPYAGGAGYNAAKFGVSAM
DKVMRIEFQERGIRVAEINPGRVHTDFSLVRFKGDQQAANAVYEGKVNLTAGDIAETIRWVASLPTHVNIDRLVITPQDQ
VI

Sequences:

>Translated_242_residues
MSNQHVVNEKKIAVVTGASSGIGEAAARALAADGWHVIVAARRKHLLDVLAADIAGTAIELDVTSDESVAAFAAQIPRCD
LLVNNAGGALGLDPIAQANLEDWQWMYNTNVLGTLRVTRALLDALSSSNGLIINISSIAGIAPYAGGAGYNAAKFGVSAM
DKVMRIEFQERGIRVAEINPGRVHTDFSLVRFKGDQQAANAVYEGKVNLTAGDIAETIRWVASLPTHVNIDRLVITPQDQ
VI
>Mature_241_residues
SNQHVVNEKKIAVVTGASSGIGEAAARALAADGWHVIVAARRKHLLDVLAADIAGTAIELDVTSDESVAAFAAQIPRCDL
LVNNAGGALGLDPIAQANLEDWQWMYNTNVLGTLRVTRALLDALSSSNGLIINISSIAGIAPYAGGAGYNAAKFGVSAMD
KVMRIEFQERGIRVAEINPGRVHTDFSLVRFKGDQQAANAVYEGKVNLTAGDIAETIRWVASLPTHVNIDRLVITPQDQV
I

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=249, Percent_Identity=34.136546184739, Blast_Score=116, Evalue=2e-26,
Organism=Homo sapiens, GI150247226, Length=183, Percent_Identity=34.4262295081967, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI19743808, Length=205, Percent_Identity=31.7073170731707, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI32483357, Length=188, Percent_Identity=31.3829787234043, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI5031737, Length=199, Percent_Identity=30.6532663316583, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI40548397, Length=186, Percent_Identity=31.7204301075269, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI214010158, Length=186, Percent_Identity=31.7204301075269, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI214010156, Length=186, Percent_Identity=31.7204301075269, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI22758144, Length=186, Percent_Identity=31.7204301075269, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI33667109, Length=193, Percent_Identity=30.5699481865285, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7657478, Length=188, Percent_Identity=32.4468085106383, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI20149619, Length=194, Percent_Identity=28.8659793814433, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI22507405, Length=185, Percent_Identity=32.972972972973, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI40254992, Length=186, Percent_Identity=30.1075268817204, Blast_Score=77, Evalue=2e-14,
Organism=Homo sapiens, GI4504503, Length=203, Percent_Identity=30.5418719211823, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI4557649, Length=183, Percent_Identity=29.5081967213115, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI44680136, Length=210, Percent_Identity=29.0476190476191, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI44680133, Length=210, Percent_Identity=29.0476190476191, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI17738292, Length=210, Percent_Identity=29.0476190476191, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI31542939, Length=192, Percent_Identity=30.2083333333333, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI126723191, Length=188, Percent_Identity=28.7234042553192, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI19923817, Length=193, Percent_Identity=28.4974093264249, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=30.5263157894737, Blast_Score=66, Evalue=2e-11,
Organism=Homo sapiens, GI50726952, Length=192, Percent_Identity=31.7708333333333, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI59889578, Length=165, Percent_Identity=29.0909090909091, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI32455239, Length=179, Percent_Identity=30.1675977653631, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI5031765, Length=179, Percent_Identity=30.1675977653631, Blast_Score=65, Evalue=6e-11,
Organism=Homo sapiens, GI10190704, Length=197, Percent_Identity=27.9187817258883, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787820, Length=237, Percent_Identity=40.9282700421941, Blast_Score=161, Evalue=3e-41,
Organism=Escherichia coli, GI1787335, Length=225, Percent_Identity=34.2222222222222, Blast_Score=88, Evalue=5e-19,
Organism=Escherichia coli, GI1786701, Length=188, Percent_Identity=32.9787234042553, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787526, Length=196, Percent_Identity=33.1632653061224, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=32.3076923076923, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788459, Length=187, Percent_Identity=26.7379679144385, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI87082160, Length=191, Percent_Identity=28.2722513089005, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=235, Percent_Identity=31.063829787234, Blast_Score=96, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI71994604, Length=234, Percent_Identity=31.1965811965812, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17559104, Length=197, Percent_Identity=31.9796954314721, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17560332, Length=213, Percent_Identity=29.1079812206573, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17560676, Length=197, Percent_Identity=27.9187817258883, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17551412, Length=206, Percent_Identity=30.5825242718447, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17562908, Length=195, Percent_Identity=33.3333333333333, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17538486, Length=197, Percent_Identity=29.9492385786802, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=192, Percent_Identity=30.2083333333333, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=194, Percent_Identity=27.8350515463918, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=190, Percent_Identity=31.5789473684211, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI193204405, Length=198, Percent_Identity=30.8080808080808, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=222, Percent_Identity=30.6306306306306, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=190, Percent_Identity=31.0526315789474, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562990, Length=192, Percent_Identity=30.2083333333333, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17538480, Length=205, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI17544670, Length=244, Percent_Identity=27.0491803278689, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=182, Percent_Identity=26.3736263736264, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17538182, Length=191, Percent_Identity=34.5549738219895, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17507613, Length=193, Percent_Identity=29.0155440414508, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI32563809, Length=193, Percent_Identity=29.0155440414508, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17555706, Length=188, Percent_Identity=30.8510638297872, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6323882, Length=246, Percent_Identity=37.8048780487805, Blast_Score=140, Evalue=1e-34,
Organism=Saccharomyces cerevisiae, GI6322067, Length=186, Percent_Identity=32.258064516129, Blast_Score=86, Evalue=5e-18,
Organism=Drosophila melanogaster, GI23397609, Length=226, Percent_Identity=34.9557522123894, Blast_Score=112, Evalue=2e-25,
Organism=Drosophila melanogaster, GI28571526, Length=187, Percent_Identity=34.7593582887701, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21357041, Length=201, Percent_Identity=36.318407960199, Blast_Score=92, Evalue=4e-19,
Organism=Drosophila melanogaster, GI24643142, Length=179, Percent_Identity=33.5195530726257, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI116007236, Length=247, Percent_Identity=31.1740890688259, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI281364494, Length=256, Percent_Identity=30.078125, Blast_Score=88, Evalue=4e-18,
Organism=Drosophila melanogaster, GI24641388, Length=247, Percent_Identity=31.9838056680162, Blast_Score=88, Evalue=6e-18,
Organism=Drosophila melanogaster, GI28571387, Length=247, Percent_Identity=27.5303643724696, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24663911, Length=257, Percent_Identity=28.7937743190661, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI21358495, Length=223, Percent_Identity=30.4932735426009, Blast_Score=83, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24639444, Length=225, Percent_Identity=32.8888888888889, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648693, Length=246, Percent_Identity=31.3008130081301, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21355889, Length=246, Percent_Identity=31.3008130081301, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI116007234, Length=248, Percent_Identity=34.2741935483871, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24644339, Length=187, Percent_Identity=29.4117647058824, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24641232, Length=254, Percent_Identity=30.3149606299213, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24648944, Length=247, Percent_Identity=27.9352226720648, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI17737361, Length=193, Percent_Identity=31.6062176165803, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24640442, Length=193, Percent_Identity=29.5336787564767, Blast_Score=68, Evalue=5e-12,
Organism=Drosophila melanogaster, GI21357673, Length=204, Percent_Identity=29.9019607843137, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI116007238, Length=183, Percent_Identity=31.1475409836066, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI21355319, Length=231, Percent_Identity=24.2424242424242, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24584752, Length=187, Percent_Identity=30.4812834224599, Blast_Score=64, Evalue=6e-11,
Organism=Drosophila melanogaster, GI116007232, Length=178, Percent_Identity=37.0786516853933, Blast_Score=64, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24580925, Length=221, Percent_Identity=28.0542986425339, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25636; Mature: 25505

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQHVVNEKKIAVVTGASSGIGEAAARALAADGWHVIVAARRKHLLDVLAADIAGTAIE
CCCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCEEE
LDVTSDESVAAFAAQIPRCDLLVNNAGGALGLDPIAQANLEDWQWMYNTNVLGTLRVTRA
EEECCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCCCCCEEEECCCCCHHHHHHHH
LLDALSSSNGLIINISSIAGIAPYAGGAGYNAAKFGVSAMDKVMRIEFQERGIRVAEINP
HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCEEEEEECC
GRVHTDFSLVRFKGDQQAANAVYEGKVNLTAGDIAETIRWVASLPTHVNIDRLVITPQDQ
CEEECCEEEEEEECCHHHHCEEEECEEEEEHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
VI
CC
>Mature Secondary Structure 
SNQHVVNEKKIAVVTGASSGIGEAAARALAADGWHVIVAARRKHLLDVLAADIAGTAIE
CCCCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCEEE
LDVTSDESVAAFAAQIPRCDLLVNNAGGALGLDPIAQANLEDWQWMYNTNVLGTLRVTRA
EEECCCCHHHHHHHHCCCEEEEEECCCCCCCCCCHHHCCCCCCEEEECCCCCHHHHHHHH
LLDALSSSNGLIINISSIAGIAPYAGGAGYNAAKFGVSAMDKVMRIEFQERGIRVAEINP
HHHHHCCCCCEEEEECCCCCCCCCCCCCCCCHHHHCHHHHHHHHHHHHHHCCEEEEEECC
GRVHTDFSLVRFKGDQQAANAVYEGKVNLTAGDIAETIRWVASLPTHVNIDRLVITPQDQ
CEEECCEEEEEEECCHHHHCEEEECEEEEEHHHHHHHHHHHHCCCCCCCCCEEEECCCCC
VI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]