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The map label for this gene is yrdA [C]

Identifier: 38232750

GI number: 38232750

Start: 101238

End: 101792

Strand: Direct

Name: yrdA [C]

Synonym: DIP0122

Alternate gene names: 38232750

Gene position: 101238-101792 (Clockwise)

Preceding gene: 38232749

Following gene: 38232752

Centisome position: 4.07

GC content: 55.32

Gene sequence:

>555_bases
ATGACTGGTCCACTTATTCTGCCGTTTAATGGCAAGGTTCCGCGTGTTCATGAGACTGCATTTATTGCTCCGAATGCCAC
TTTGATTGGTGATGTGACGATTGGGCCCTATGCTTCGGTGTTTTATGGCTGTGTGTTGCGGGCGGATATTAATTCGATTG
TTGTGGGGGCGCGTACGAATATCCAGGATAATTCGGTGTTGCATGTTGATCGTGACGCTGCCTGTGTGCTGGGTGACGAT
GTCACGGTGGGGCACATGGCGTTGGTGCATGGTTCCACTGTGGGTGATGGCACGTTGGTGGGCATGCATGCCGCGTTGTT
GTCGCGTTCGGTGGTAGGTGCTGGCAGTTTGATTGCTGCTGGTGCGGTGGTGCTGGAGGGGCAGGTGATTCCTGTGAAGT
CGTTGGCTGCTGGGGTGCCGGCGAAGGTGCGTCGTGAGTTATCTGATGAGCAGTCGGCTGGGTTTATTCCCCATGCTGGC
CGGTATGTTGAGGTGGCGGTTCAGCATGGGGAGTTGGGTGCTCCGCTGAGTGTGGAGGATGTTCGCTTCCGTTAA

Upstream 100 bases:

>100_bases
GCAGCTAGGGGTAGTTGTTTTAAGTTGTTTCGAGTTGTTTTAACTTGTTGTTGCGTGCCTACTGGGTTGATCGAGGGCTT
CTCGGCATAGTGTTGTAGCT

Downstream 100 bases:

>100_bases
CAGGATGCGAGGATGCGCTTTGCCAGTCCGAGTGGGTCTTCGATGAGGTGATCGAGGGCTACTGCTCGGGCGGCGGCGCG
TGCGTTGTCCAGGTGGGTGG

Product: putative siderophore binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 184; Mature: 183

Protein sequence:

>184_residues
MTGPLILPFNGKVPRVHETAFIAPNATLIGDVTIGPYASVFYGCVLRADINSIVVGARTNIQDNSVLHVDRDAACVLGDD
VTVGHMALVHGSTVGDGTLVGMHAALLSRSVVGAGSLIAAGAVVLEGQVIPVKSLAAGVPAKVRRELSDEQSAGFIPHAG
RYVEVAVQHGELGAPLSVEDVRFR

Sequences:

>Translated_184_residues
MTGPLILPFNGKVPRVHETAFIAPNATLIGDVTIGPYASVFYGCVLRADINSIVVGARTNIQDNSVLHVDRDAACVLGDD
VTVGHMALVHGSTVGDGTLVGMHAALLSRSVVGAGSLIAAGAVVLEGQVIPVKSLAAGVPAKVRRELSDEQSAGFIPHAG
RYVEVAVQHGELGAPLSVEDVRFR
>Mature_183_residues
TGPLILPFNGKVPRVHETAFIAPNATLIGDVTIGPYASVFYGCVLRADINSIVVGARTNIQDNSVLHVDRDAACVLGDDV
TVGHMALVHGSTVGDGTLVGMHAALLSRSVVGAGSLIAAGAVVLEGQVIPVKSLAAGVPAKVRRELSDEQSAGFIPHAGR
YVEVAVQHGELGAPLSVEDVRFR

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=176, Percent_Identity=33.5227272727273, Blast_Score=104, Evalue=4e-24,
Organism=Escherichia coli, GI1787667, Length=148, Percent_Identity=39.1891891891892, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI87081681, Length=145, Percent_Identity=37.9310344827586, Blast_Score=96, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001451
- InterPro:   IPR011004 [H]

Pfam domain/function: PF00132 Hexapep [H]

EC number: NA

Molecular weight: Translated: 19008; Mature: 18877

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGPLILPFNGKVPRVHETAFIAPNATLIGDVTIGPYASVFYGCVLRADINSIVVGARTN
CCCCEEEECCCCCCCEECEEEECCCCEEEEECCCCHHHHHHHHHHHEECCCEEEEECCCC
IQDNSVLHVDRDAACVLGDDVTVGHMALVHGSTVGDGTLVGMHAALLSRSVVGAGSLIAA
CCCCCEEEECCCCEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHC
GAVVLEGQVIPVKSLAAGVPAKVRRELSDEQSAGFIPHAGRYVEVAVQHGELGAPLSVED
CEEEECCCEECHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
VRFR
CCCC
>Mature Secondary Structure 
TGPLILPFNGKVPRVHETAFIAPNATLIGDVTIGPYASVFYGCVLRADINSIVVGARTN
CCCEEEECCCCCCCEECEEEECCCCEEEEECCCCHHHHHHHHHHHEECCCEEEEECCCC
IQDNSVLHVDRDAACVLGDDVTVGHMALVHGSTVGDGTLVGMHAALLSRSVVGAGSLIAA
CCCCCEEEECCCCEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHC
GAVVLEGQVIPVKSLAAGVPAKVRRELSDEQSAGFIPHAGRYVEVAVQHGELGAPLSVED
CEEEECCCEECHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCC
VRFR
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]