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The map label for this gene is opuBD [H]

Identifier: 38232726

GI number: 38232726

Start: 79095

End: 79736

Strand: Reverse

Name: opuBD [H]

Synonym: DIP0096

Alternate gene names: 38232726

Gene position: 79736-79095 (Counterclockwise)

Preceding gene: 38232727

Following gene: 38232725

Centisome position: 3.2

GC content: 60.75

Gene sequence:

>642_bases
ATGTGGCTAATGCATGCCTGGCCAGAAGTGCTGGATCTACTGCGCGCGCACGTGCTGCTCAGTGTTCCCGCCATCGTGAT
CAGCGTGCTGGTGGCAGTTCCTGTGGGTCTGTTTGCCGCACGCCATCCGCGGGTGGGTAACACGGTGGTGCAGGTGACGT
CGTTAGCCTATACGATCCCAGCGCTTCCCATGCTGGTCATCGTGCCTTTTATCGTGGCTGTGCCGCTGCGCTCGCAGATC
AATGTGATCATTGCGCTGTGCGTGTACGGCATTGCTTTGATCGTGCGCACCGCCACCGACGCGTTTCGCTCGGTACCGGA
GGAAGTCCGCACCGCCGCGGTGGCCCAAGGTATGAGCCCGAGCCAGATCGCATGGAAGGTAGATATGCCGCTGGCAATCC
CCGTGTTGATCTCTGGCCTGCGCGTGCTGTGCGTTTCCACCGTCGGGCTTGTCACCATCGGCGCGCTGATTGGTGTATCC
AGCTTAGGCAGCCTGTTTACCGACGGTTTTCAACGCAACATCACCGCCGAGGTAGTGGTGGGCATCGTGGCCGTTGTGCT
CCTCGCCGTGCTTTTCGACGTCGCTTGCCTCATCCTGCAACGCCTTTGCACCCCATGGACTCGCCCAGGAAAGGCACGGT
AA

Upstream 100 bases:

>100_bases
ACCAGGAAAATCGCAGCCTGCACACCGAGCTTATCGACGGCCACACCGTAGTCGTTGACACCTTCGGCAGGCCGCTTGGA
ACCCTAGGTGATGGTGCCAC

Downstream 100 bases:

>100_bases
CCCCACATGACTTGGTTTGGTGATCTCCTCTCCTATCTCACCACTGCCGCGCACTGGTGGGGCTCGCAAGGCTTTCTTGC
CCGTCTTCTAGAACACGTTG

Product: choline transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 213

Protein sequence:

>213_residues
MWLMHAWPEVLDLLRAHVLLSVPAIVISVLVAVPVGLFAARHPRVGNTVVQVTSLAYTIPALPMLVIVPFIVAVPLRSQI
NVIIALCVYGIALIVRTATDAFRSVPEEVRTAAVAQGMSPSQIAWKVDMPLAIPVLISGLRVLCVSTVGLVTIGALIGVS
SLGSLFTDGFQRNITAEVVVGIVAVVLLAVLFDVACLILQRLCTPWTRPGKAR

Sequences:

>Translated_213_residues
MWLMHAWPEVLDLLRAHVLLSVPAIVISVLVAVPVGLFAARHPRVGNTVVQVTSLAYTIPALPMLVIVPFIVAVPLRSQI
NVIIALCVYGIALIVRTATDAFRSVPEEVRTAAVAQGMSPSQIAWKVDMPLAIPVLISGLRVLCVSTVGLVTIGALIGVS
SLGSLFTDGFQRNITAEVVVGIVAVVLLAVLFDVACLILQRLCTPWTRPGKAR
>Mature_213_residues
MWLMHAWPEVLDLLRAHVLLSVPAIVISVLVAVPVGLFAARHPRVGNTVVQVTSLAYTIPALPMLVIVPFIVAVPLRSQI
NVIIALCVYGIALIVRTATDAFRSVPEEVRTAAVAQGMSPSQIAWKVDMPLAIPVLISGLRVLCVSTVGLVTIGALIGVS
SLGSLFTDGFQRNITAEVVVGIVAVVLLAVLFDVACLILQRLCTPWTRPGKAR

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for glycine betaine, carnitine and choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788451, Length=195, Percent_Identity=30.7692307692308, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789033, Length=165, Percent_Identity=25.4545454545455, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22668; Mature: 22668

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWLMHAWPEVLDLLRAHVLLSVPAIVISVLVAVPVGLFAARHPRVGNTVVQVTSLAYTIP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALPMLVIVPFIVAVPLRSQINVIIALCVYGIALIVRTATDAFRSVPEEVRTAAVAQGMSP
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SQIAWKVDMPLAIPVLISGLRVLCVSTVGLVTIGALIGVSSLGSLFTDGFQRNITAEVVV
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
GIVAVVLLAVLFDVACLILQRLCTPWTRPGKAR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MWLMHAWPEVLDLLRAHVLLSVPAIVISVLVAVPVGLFAARHPRVGNTVVQVTSLAYTIP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
ALPMLVIVPFIVAVPLRSQINVIIALCVYGIALIVRTATDAFRSVPEEVRTAAVAQGMSP
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
SQIAWKVDMPLAIPVLISGLRVLCVSTVGLVTIGALIGVSSLGSLFTDGFQRNITAEVVV
CCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
GIVAVVLLAVLFDVACLILQRLCTPWTRPGKAR
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10216873; 9384377 [H]