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The map label for this gene is opuBB [H]

Identifier: 38232725

GI number: 38232725

Start: 78414

End: 79088

Strand: Reverse

Name: opuBB [H]

Synonym: DIP0095

Alternate gene names: 38232725

Gene position: 79088-78414 (Counterclockwise)

Preceding gene: 38232726

Following gene: 38232724

Centisome position: 3.18

GC content: 60.15

Gene sequence:

>675_bases
ATGACTTGGTTTGGTGATCTCCTCTCCTATCTCACCACTGCCGCGCACTGGTGGGGCTCGCAAGGCTTTCTTGCCCGTCT
TCTAGAACACGTTGGAATCAGCCTGGCTGCGGTCGCCATTGCCGCACTGCTCGCCCTTCCGGCCGGTGTTCTGATCGGCC
ATACTGGCCGCGGCGCCGGCCTTGTTGGTGGTGTCAGCGGTGCTGCCCGCGCGCTGCCAACCTTGGGCTTGCTCACGATC
TTTGGGCTGGCTTTTGGCATTGGACTTACGGCACCGATGCTGGCGCTGATTATTTTGGCGATCCCATCACTGCTGGCTGG
TGCTTATTCCGGCGTGGCCGCCGTAGATCGCGCGACCATCGACGCCGCCTACGCCATGGGTTTTACCCACCGCCAAGTAA
TCAGTTCCATTGAGCTACCACTATCTGCAGCCGTGCTGGTGGGTGGCATTCGCGCCGCAGTGTTGCAGGTGACCGCTACG
GCCACACTTGCTGCATATACCGCAGATGTGGGGTTGGGCCGATTTATTTTCCACGGCCTCAAAACGAGGGATTACATCGA
GATGTTGGCGGCCTCCGTGCTGGTGATCGCACTCGCGTTGCTTTTCGACGCCCTACTCGGGGGCGCGCAAAAACTGATCT
CTCAACGCACCCGCACCGCTACGCCTGCTCCTTAA

Upstream 100 bases:

>100_bases
GGCCGTTGTGCTCCTCGCCGTGCTTTTCGACGTCGCTTGCCTCATCCTGCAACGCCTTTGCACCCCATGGACTCGCCCAG
GAAAGGCACGGTAACCCCAC

Downstream 100 bases:

>100_bases
GAAGCAAATCGTAGACGGGGTCGAGGACCACACGTACATTGTTGGTAATCTTGCCACCGCAATCATAAAAGCGCAGCACG
CGATTGTATAAAATCCCACG

Product: choline transport system permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MTWFGDLLSYLTTAAHWWGSQGFLARLLEHVGISLAAVAIAALLALPAGVLIGHTGRGAGLVGGVSGAARALPTLGLLTI
FGLAFGIGLTAPMLALIILAIPSLLAGAYSGVAAVDRATIDAAYAMGFTHRQVISSIELPLSAAVLVGGIRAAVLQVTAT
ATLAAYTADVGLGRFIFHGLKTRDYIEMLAASVLVIALALLFDALLGGAQKLISQRTRTATPAP

Sequences:

>Translated_224_residues
MTWFGDLLSYLTTAAHWWGSQGFLARLLEHVGISLAAVAIAALLALPAGVLIGHTGRGAGLVGGVSGAARALPTLGLLTI
FGLAFGIGLTAPMLALIILAIPSLLAGAYSGVAAVDRATIDAAYAMGFTHRQVISSIELPLSAAVLVGGIRAAVLQVTAT
ATLAAYTADVGLGRFIFHGLKTRDYIEMLAASVLVIALALLFDALLGGAQKLISQRTRTATPAP
>Mature_223_residues
TWFGDLLSYLTTAAHWWGSQGFLARLLEHVGISLAAVAIAALLALPAGVLIGHTGRGAGLVGGVSGAARALPTLGLLTIF
GLAFGIGLTAPMLALIILAIPSLLAGAYSGVAAVDRATIDAAYAMGFTHRQVISSIELPLSAAVLVGGIRAAVLQVTATA
TLAAYTADVGLGRFIFHGLKTRDYIEMLAASVLVIALALLFDALLGGAQKLISQRTRTATPAP

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=158, Percent_Identity=27.8481012658228, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 22811; Mature: 22680

Theoretical pI: Translated: 9.86; Mature: 9.86

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWFGDLLSYLTTAAHWWGSQGFLARLLEHVGISLAAVAIAALLALPAGVLIGHTGRGAG
CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEECCCCCCC
LVGGVSGAARALPTLGLLTIFGLAFGIGLTAPMLALIILAIPSLLAGAYSGVAAVDRATI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAAYAMGFTHRQVISSIELPLSAAVLVGGIRAAVLQVTATATLAAYTADVGLGRFIFHGL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KTRDYIEMLAASVLVIALALLFDALLGGAQKLISQRTRTATPAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TWFGDLLSYLTTAAHWWGSQGFLARLLEHVGISLAAVAIAALLALPAGVLIGHTGRGAG
CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHEECCCCCCC
LVGGVSGAARALPTLGLLTIFGLAFGIGLTAPMLALIILAIPSLLAGAYSGVAAVDRATI
HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DAAYAMGFTHRQVISSIELPLSAAVLVGGIRAAVLQVTATATLAAYTADVGLGRFIFHGL
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
KTRDYIEMLAASVLVIALALLFDALLGGAQKLISQRTRTATPAP
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]