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The map label for this gene is yidZ [H]

Identifier: 37681384

GI number: 37681384

Start: 3286809

End: 3287750

Strand: Direct

Name: yidZ [H]

Synonym: VV3199

Alternate gene names: 37681384

Gene position: 3286809-3287750 (Clockwise)

Preceding gene: 37681381

Following gene: 37681385

Centisome position: 97.98

GC content: 49.89

Gene sequence:

>942_bases
ATGAACATCGAAAAACTCTCCCGCCTCGACCTTAATCTCCTAGTCTGCTTGAAAGTGCTGTTCGAGGAACTCAATGTGAC
TCGCACTGCGCATCGACTTTGTTTAAGTCAATCAGCGGTGAGTAAAGCGCTGGCAAAACTGCGCCAACAGTTCGATGATC
CCTTATTCGTTCGACATTCACACGGGCTTACTCCGACAGCGCGAGCGCTGTTTCTCAAACCGAAACTGGATCTGTTGATC
AATCAGTTAGAGCATCTTACTTTGCCGGAAGAGTTTCACCCTGAAAGCAGCGAATACCGCTTTCGTATTGCCGCAGTGGA
AAGTGTGTATCCCCTGATCTTGCCGCACTTTCTGCCATCGATTTTCCAGCAAGCGCCCAACGTCACCATCAGCACTCATT
CATGGTCAGAACAGACCTTCAAAATGTTGCAGCGCGGTGAACTGGATTTGGGTATGACTGGCAAAGACATCGACATCAAC
GATGCCAAGCTCACCATGCTGCCGCCGTTTGATATTTGTGAGCAGGAAATTTATCGCGACAATCAGATGTGCGTAGTGCG
AAAAAACCACCCAGCGCTGCAGCAGCCTTGGCATTTGGAAAACTACTTATCGCTGCGCCACGTGCAAGTACGCTGTGACG
GCAATGAACGCTGGCTGTTAGATTATCGCCTCGCAGATATTGGCCGTGAGCGCGATATCGCCATCACCGTACCCGACTTC
AATAGTGCCGCGAACCTCTGTTCTTACACCGACTTTGTCTTCACCGCACCCAGCCACTTTGTCTTGCTCGCCGCCAAACA
ACTCGATTTACAGGTGCTGCCTTTGCCGATCGAATTTCCACCGATGGCATACACTCTGTTTTGGCACAAAGACAGAGAAA
ATGACCCAGCCTTAAGTTGGCTACGCAACATGATCACACAGAAAACCCTGCATCTTAGGTAA

Upstream 100 bases:

>100_bases
CTCCAAATTGAACAAGAACTTTGATGAGAGTTTAACCGCCTCGTGATATGAACGGAAATGATGTATATTCATCGCTGATA
TTCTTATTGGGAAATTCAGA

Downstream 100 bases:

>100_bases
AAATTTCGCCAATTGATTGCGCTGTTGGGCTAAAATGAGTAGCTTAACCGCCGATAGTCCTCCGGGCTCATCTATGGTCT
GTGGTCCTTACATGGAAGAT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MNIEKLSRLDLNLLVCLKVLFEELNVTRTAHRLCLSQSAVSKALAKLRQQFDDPLFVRHSHGLTPTARALFLKPKLDLLI
NQLEHLTLPEEFHPESSEYRFRIAAVESVYPLILPHFLPSIFQQAPNVTISTHSWSEQTFKMLQRGELDLGMTGKDIDIN
DAKLTMLPPFDICEQEIYRDNQMCVVRKNHPALQQPWHLENYLSLRHVQVRCDGNERWLLDYRLADIGRERDIAITVPDF
NSAANLCSYTDFVFTAPSHFVLLAAKQLDLQVLPLPIEFPPMAYTLFWHKDRENDPALSWLRNMITQKTLHLR

Sequences:

>Translated_313_residues
MNIEKLSRLDLNLLVCLKVLFEELNVTRTAHRLCLSQSAVSKALAKLRQQFDDPLFVRHSHGLTPTARALFLKPKLDLLI
NQLEHLTLPEEFHPESSEYRFRIAAVESVYPLILPHFLPSIFQQAPNVTISTHSWSEQTFKMLQRGELDLGMTGKDIDIN
DAKLTMLPPFDICEQEIYRDNQMCVVRKNHPALQQPWHLENYLSLRHVQVRCDGNERWLLDYRLADIGRERDIAITVPDF
NSAANLCSYTDFVFTAPSHFVLLAAKQLDLQVLPLPIEFPPMAYTLFWHKDRENDPALSWLRNMITQKTLHLR
>Mature_313_residues
MNIEKLSRLDLNLLVCLKVLFEELNVTRTAHRLCLSQSAVSKALAKLRQQFDDPLFVRHSHGLTPTARALFLKPKLDLLI
NQLEHLTLPEEFHPESSEYRFRIAAVESVYPLILPHFLPSIFQQAPNVTISTHSWSEQTFKMLQRGELDLGMTGKDIDIN
DAKLTMLPPFDICEQEIYRDNQMCVVRKNHPALQQPWHLENYLSLRHVQVRCDGNERWLLDYRLADIGRERDIAITVPDF
NSAANLCSYTDFVFTAPSHFVLLAAKQLDLQVLPLPIEFPPMAYTLFWHKDRENDPALSWLRNMITQKTLHLR

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=296, Percent_Identity=32.7702702702703, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI87081684, Length=311, Percent_Identity=29.2604501607717, Blast_Score=113, Evalue=1e-26,
Organism=Escherichia coli, GI87081766, Length=302, Percent_Identity=24.8344370860927, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786820, Length=84, Percent_Identity=39.2857142857143, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 36347; Mature: 36347

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIEKLSRLDLNLLVCLKVLFEELNVTRTAHRLCLSQSAVSKALAKLRQQFDDPLFVRHS
CCHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
HGLTPTARALFLKPKLDLLINQLEHLTLPEEFHPESSEYRFRIAAVESVYPLILPHFLPS
CCCCHHHHEEEECCHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHH
IFQQAPNVTISTHSWSEQTFKMLQRGELDLGMTGKDIDINDAKLTMLPPFDICEQEIYRD
HHHHCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCC
NQMCVVRKNHPALQQPWHLENYLSLRHVQVRCDGNERWLLDYRLADIGRERDIAITVPDF
CCEEEEECCCCCCCCCCCHHHHHEEEEEEEEECCCCEEEEEEEHHHCCCCCCEEEECCCC
NSAANLCSYTDFVFTAPSHFVLLAAKQLDLQVLPLPIEFPPMAYTLFWHKDRENDPALSW
CCHHHHHHHCCEEEECCCCEEEEEEECCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHH
LRNMITQKTLHLR
HHHHHHHHHHCCC
>Mature Secondary Structure
MNIEKLSRLDLNLLVCLKVLFEELNVTRTAHRLCLSQSAVSKALAKLRQQFDDPLFVRHS
CCHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEC
HGLTPTARALFLKPKLDLLINQLEHLTLPEEFHPESSEYRFRIAAVESVYPLILPHFLPS
CCCCHHHHEEEECCHHHHHHHHHHHCCCCHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHH
IFQQAPNVTISTHSWSEQTFKMLQRGELDLGMTGKDIDINDAKLTMLPPFDICEQEIYRD
HHHHCCCCEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHCC
NQMCVVRKNHPALQQPWHLENYLSLRHVQVRCDGNERWLLDYRLADIGRERDIAITVPDF
CCEEEEECCCCCCCCCCCHHHHHEEEEEEEEECCCCEEEEEEEHHHCCCCCCEEEECCCC
NSAANLCSYTDFVFTAPSHFVLLAAKQLDLQVLPLPIEFPPMAYTLFWHKDRENDPALSW
CCHHHHHHHCCEEEECCCCEEEEEEECCCEEEEECCCCCCCCEEEEEEECCCCCCHHHHH
LRNMITQKTLHLR
HHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA