| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is ylaK [H]
Identifier: 37681110
GI number: 37681110
Start: 2987229
End: 2988608
Strand: Direct
Name: ylaK [H]
Synonym: VV2926
Alternate gene names: 37681110
Gene position: 2987229-2988608 (Clockwise)
Preceding gene: 37681106
Following gene: 37681138
Centisome position: 89.05
GC content: 50.0
Gene sequence:
>1380_bases ATGGGCGATACCGATCGGAAACTGTTTGTACTTGATACCAACATACTGCTGCACGAACCCTTCGCAATTTATTCCTTTAA AGAGCATGACGTCGTCATCCCTATGACGGTGCTTGAAGAACTCGACAGAATCAAAGACAGCAAGCGAGATGTGGCTCGTG ATGCACGCGTGGCCATTCGGGCGTTGGAAGATCTTTTCAAAGACGCAACACCTGATGAAATTTCAGAAGGTATTCCTGTT TCGAAAGAGGGCGAAGGCCGCGGCACCATTTCTATTCTGGCCGATTTTGAACTGCAAGAAACCGTCAAAGCATTCGCAGA TAAAGCGGGTGACAACCGTATCCTCAATGCTGTGCTCTACCTACAAAACAAGCGTGCCCCACGCGAAGTGGTGTTGGTCA CTAAAGACATCAACATGCGCCTACGTGCCAAAGGCGCAGGGGTGCGGTATGTGGAAGATTACCGCACTGACCAATTGATT GATGACATTCAATACCTCACTAAAGGCTACCAAGTGCGAGAAGGTGAGTTCTGGAGCCAAGTCGATCAGGTTGAAAGCTA CGCGTTAGAAGGACGCACTTTCCATAAGCTGGATCGAGCGCCGTTTGATCCGACGTTTATCAATCAATACGTAGTGGATG CTGAGGAAAGTGATTTCGTTGGCCGCGTCGAGACCATCGATGGTGACAAATTGACGTTGCTCGATCTCAGCCGTGAGCGC CTGATGCACCGCAAAGCATGGGACATCACACCGAAAAATATCTACCAAGCGATGGCATTGGACGCCTTGCTCGATCCTGA TATCGATCTTGTGATTCTTACTGGTGCGGCGGGCAGCGGTAAAACCTTACTGGCACTTGCGGCTGCGCTTGAACAAACCA TTGAAAAAGGCATGTTCGATAAGATCATCGTCACGCGAAACACCCCAGACATTGGCGAGTCAATCGGCTTCTTACCGGGG ACGGAAGAAGAAAAAATGATGCCTTGGCTGGCAGCGGTCACCGATACCTTAGAAGCACTGCACAAGCACGATCACTGCAC CGAAGGCTCGCTGAAATACATTGTCGACAAAGCCAACATTCAGTTTAAGTCGATCAACTTTATGCGCGGCCGCTCGATCC AAAATGCGTTTGTTCTGCTCGATGAGTGTCAAAACCTCACCGCCTCGCAGATCAAAACCATTATTACTCGCTGCGGCGAA GGGACGAAGATCGTCTGTTCCGGTAACCTTGCGCAGATCGATTCTCACTACCTCACCCCAGTTACCTCAGGATTAACTTA CATGGTTGAGCGCTTTAAAAACTTTGAAGGCAGCGCCAACGTCCACCTCAATGGCGTGGTGCGCAGTCGCTTGGCTGAGT TTGCCGAGGAGAATTTGTAG
Upstream 100 bases:
>100_bases AATGCTCACGACCTCTTCTGCAGGCAAGATGCTAAGCAGGAAGCGCATTCTTCCGCTTAGTGTACTTTGAGCAAAGCCGG CTTTACGGCAAGGAGACGCT
Downstream 100 bases:
>100_bases TGGAGAAAGAGAGGAACTAGGAGCTAGGAGCTAGGAACTAGAAACTAGGAACTAGGAACTAGGAACTAGGAACTAGGAAC TAGGAACTAGGAACTAGGAA
Product: ATPase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 459; Mature: 458
Protein sequence:
>459_residues MGDTDRKLFVLDTNILLHEPFAIYSFKEHDVVIPMTVLEELDRIKDSKRDVARDARVAIRALEDLFKDATPDEISEGIPV SKEGEGRGTISILADFELQETVKAFADKAGDNRILNAVLYLQNKRAPREVVLVTKDINMRLRAKGAGVRYVEDYRTDQLI DDIQYLTKGYQVREGEFWSQVDQVESYALEGRTFHKLDRAPFDPTFINQYVVDAEESDFVGRVETIDGDKLTLLDLSRER LMHRKAWDITPKNIYQAMALDALLDPDIDLVILTGAAGSGKTLLALAAALEQTIEKGMFDKIIVTRNTPDIGESIGFLPG TEEEKMMPWLAAVTDTLEALHKHDHCTEGSLKYIVDKANIQFKSINFMRGRSIQNAFVLLDECQNLTASQIKTIITRCGE GTKIVCSGNLAQIDSHYLTPVTSGLTYMVERFKNFEGSANVHLNGVVRSRLAEFAEENL
Sequences:
>Translated_459_residues MGDTDRKLFVLDTNILLHEPFAIYSFKEHDVVIPMTVLEELDRIKDSKRDVARDARVAIRALEDLFKDATPDEISEGIPV SKEGEGRGTISILADFELQETVKAFADKAGDNRILNAVLYLQNKRAPREVVLVTKDINMRLRAKGAGVRYVEDYRTDQLI DDIQYLTKGYQVREGEFWSQVDQVESYALEGRTFHKLDRAPFDPTFINQYVVDAEESDFVGRVETIDGDKLTLLDLSRER LMHRKAWDITPKNIYQAMALDALLDPDIDLVILTGAAGSGKTLLALAAALEQTIEKGMFDKIIVTRNTPDIGESIGFLPG TEEEKMMPWLAAVTDTLEALHKHDHCTEGSLKYIVDKANIQFKSINFMRGRSIQNAFVLLDECQNLTASQIKTIITRCGE GTKIVCSGNLAQIDSHYLTPVTSGLTYMVERFKNFEGSANVHLNGVVRSRLAEFAEENL >Mature_458_residues GDTDRKLFVLDTNILLHEPFAIYSFKEHDVVIPMTVLEELDRIKDSKRDVARDARVAIRALEDLFKDATPDEISEGIPVS KEGEGRGTISILADFELQETVKAFADKAGDNRILNAVLYLQNKRAPREVVLVTKDINMRLRAKGAGVRYVEDYRTDQLID DIQYLTKGYQVREGEFWSQVDQVESYALEGRTFHKLDRAPFDPTFINQYVVDAEESDFVGRVETIDGDKLTLLDLSRERL MHRKAWDITPKNIYQAMALDALLDPDIDLVILTGAAGSGKTLLALAAALEQTIEKGMFDKIIVTRNTPDIGESIGFLPGT EEEKMMPWLAAVTDTLEALHKHDHCTEGSLKYIVDKANIQFKSINFMRGRSIQNAFVLLDECQNLTASQIKTIITRCGEG TKIVCSGNLAQIDSHYLTPVTSGLTYMVERFKNFEGSANVHLNGVVRSRLAEFAEENL
Specific function: Unknown
COG id: COG1875
COG function: function code T; Predicted ATPase related to phosphate starvation-inducible protein PhoH
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PINc domain [H]
Homologues:
Organism=Escherichia coli, GI1787257, Length=212, Percent_Identity=34.9056603773585, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI145693103, Length=188, Percent_Identity=34.5744680851064, Blast_Score=96, Evalue=4e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 - InterPro: IPR006596 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 51612; Mature: 51481
Theoretical pI: Translated: 4.76; Mature: 4.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGDTDRKLFVLDTNILLHEPFAIYSFKEHDVVIPMTVLEELDRIKDSKRDVARDARVAIR CCCCCCEEEEEECCEEEECCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH ALEDLFKDATPDEISEGIPVSKEGEGRGTISILADFELQETVKAFADKAGDNRILNAVLY HHHHHHCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHE LQNKRAPREVVLVTKDINMRLRAKGAGVRYVEDYRTDQLIDDIQYLTKGYQVREGEFWSQ EECCCCCCEEEEEEECCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCEEECCHHHHH VDQVESYALEGRTFHKLDRAPFDPTFINQYVVDAEESDFVGRVETIDGDKLTLLDLSRER HHHHHHHHHCCCHHHHHCCCCCCHHHHHHEEECCCCCCCCCEEEECCCCEEEEEECHHHH LMHRKAWDITPKNIYQAMALDALLDPDIDLVILTGAAGSGKTLLALAAALEQTIEKGMFD HHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC KIIVTRNTPDIGESIGFLPGTEEEKMMPWLAAVTDTLEALHKHDHCTEGSLKYIVDKANI EEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCE QFKSINFMRGRSIQNAFVLLDECQNLTASQIKTIITRCGEGTKIVCSGNLAQIDSHYLTP EEEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCH VTSGLTYMVERFKNFEGSANVHLNGVVRSRLAEFAEENL HHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCC >Mature Secondary Structure GDTDRKLFVLDTNILLHEPFAIYSFKEHDVVIPMTVLEELDRIKDSKRDVARDARVAIR CCCCCEEEEEECCEEEECCEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH ALEDLFKDATPDEISEGIPVSKEGEGRGTISILADFELQETVKAFADKAGDNRILNAVLY HHHHHHCCCCHHHHHCCCCCCCCCCCCEEEEEEECCCHHHHHHHHHHCCCCHHHHHHHHE LQNKRAPREVVLVTKDINMRLRAKGAGVRYVEDYRTDQLIDDIQYLTKGYQVREGEFWSQ EECCCCCCEEEEEEECCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHCCCEEECCHHHHH VDQVESYALEGRTFHKLDRAPFDPTFINQYVVDAEESDFVGRVETIDGDKLTLLDLSRER HHHHHHHHHCCCHHHHHCCCCCCHHHHHHEEECCCCCCCCCEEEECCCCEEEEEECHHHH LMHRKAWDITPKNIYQAMALDALLDPDIDLVILTGAAGSGKTLLALAAALEQTIEKGMFD HHHHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCC KIIVTRNTPDIGESIGFLPGTEEEKMMPWLAAVTDTLEALHKHDHCTEGSLKYIVDKANI EEEEECCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCE QFKSINFMRGRSIQNAFVLLDECQNLTASQIKTIITRCGEGTKIVCSGNLAQIDSHYLTP EEEEEEECCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCH VTSGLTYMVERFKNFEGSANVHLNGVVRSRLAEFAEENL HHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]