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The map label for this gene is yjgF [H]

Identifier: 37681106

GI number: 37681106

Start: 2981311

End: 2981733

Strand: Direct

Name: yjgF [H]

Synonym: VV2922

Alternate gene names: 37681106

Gene position: 2981311-2981733 (Clockwise)

Preceding gene: 37681105

Following gene: 37681110

Centisome position: 88.87

GC content: 49.41

Gene sequence:

>423_bases
TTGTTTTCCTTGCAATCAAGACGGAACATAATAATGACTAAAGTACTTCATACAGACTCAGCACCTGCTGCAATCGGCCC
ATACATCCAAGGCGTAGACCTAGGCAATATGGTACTGACCTCTGGCCAAATCCCAGTAAACCCAGCAACAGGCGAAGTGC
CAGCAGACATCGCAGCGCAAGCTCGCCAGTCGCTCGACAACGTCAAAGCGGTGGTAGAAGCCTCAGGCCTAACTGTAGGC
GACATCGTGAAAATGACGGTATTCGTCAAAGATCTCAACGATTTTGGCACAGTAAATGAAGTGTATGGTAACTTCTTCGA
CGAGCACAACGTCGCGCACTACCCAGCACGTTCATGTGTGGAAGTGGCTCGTCTACCAAAAGACGTGGGCATCGAAATCG
AAGCGATCGCGGTTCGTAAATAA

Upstream 100 bases:

>100_bases
CCGAGAGATCGTCACTGAGCGTTAATCGATACGATCCCCGCCTACCTAGCGGGGATTTTTTCTTTACCAATCATTTCTTT
CACGGCACACTGAACGCTCT

Downstream 100 bases:

>100_bases
TCGCCAATCCAACCGATTTTAAAGGGTGACATCAGGTCACCCTTTTTTATGGGTGCTCGCTACACCAAACGGTTGAGCGT
TTCACCTCGCCAATAGGCGT

Product: putative translation initiation inhibitor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MFSLQSRRNIIMTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVG
DIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVRK

Sequences:

>Translated_140_residues
MFSLQSRRNIIMTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVG
DIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVRK
>Mature_140_residues
MFSLQSRRNIIMTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQARQSLDNVKAVVEASGLTVG
DIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCVEVARLPKDVGIEIEAIAVRK

Specific function: May have a phosphotransferase activity [H]

COG id: COG0251

COG function: function code J; Putative translation initiation inhibitor, yjgF family

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Homo sapiens, GI5032215, Length=130, Percent_Identity=40.7692307692308, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87082396, Length=129, Percent_Identity=79.8449612403101, Blast_Score=214, Evalue=2e-57,
Organism=Escherichia coli, GI87082213, Length=128, Percent_Identity=71.875, Blast_Score=196, Evalue=4e-52,
Organism=Escherichia coli, GI1787245, Length=116, Percent_Identity=28.448275862069, Blast_Score=61, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI25148896, Length=128, Percent_Identity=40.625, Blast_Score=108, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71982075, Length=128, Percent_Identity=40.625, Blast_Score=108, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71982068, Length=128, Percent_Identity=40.625, Blast_Score=108, Evalue=1e-24,
Organism=Saccharomyces cerevisiae, GI6322138, Length=134, Percent_Identity=40.2985074626866, Blast_Score=98, Evalue=5e-22,
Organism=Saccharomyces cerevisiae, GI6320899, Length=107, Percent_Identity=42.9906542056075, Blast_Score=92, Evalue=4e-20,
Organism=Drosophila melanogaster, GI19921376, Length=129, Percent_Identity=41.8604651162791, Blast_Score=97, Evalue=4e-21,

Paralogues:

None

Copy number: 1320 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR006056
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 15036; Mature: 15036

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: PS01094 UPF0076

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSLQSRRNIIMTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQ
CCCCCCCCCEEEHEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
ARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHH
EVARLPKDVGIEIEAIAVRK
HHHHCCCCCCEEEEEEEECC
>Mature Secondary Structure
MFSLQSRRNIIMTKVLHTDSAPAAIGPYIQGVDLGNMVLTSGQIPVNPATGEVPADIAAQ
CCCCCCCCCEEEHEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHH
ARQSLDNVKAVVEASGLTVGDIVKMTVFVKDLNDFGTVNEVYGNFFDEHNVAHYPARSCV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHH
EVARLPKDVGIEIEAIAVRK
HHHHCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]