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The map label for this gene is cdaR [H]

Identifier: 37680934

GI number: 37680934

Start: 2798147

End: 2799415

Strand: Direct

Name: cdaR [H]

Synonym: VV2749

Alternate gene names: 37680934

Gene position: 2798147-2799415 (Clockwise)

Preceding gene: 37680927

Following gene: 37680935

Centisome position: 83.41

GC content: 44.76

Gene sequence:

>1269_bases
ATGTTTTTCTCTATTGATAACGAGATCAGGTACTATTATCGACAAATTCCCACTTGGACTCCACTCTCAAGCATGAAACT
GAACGAAACTATTGCACGGCAAATTGTCGAACGCACCATGAAGATCATCCCCTATTCGGTCAATGTGATGGACGATCAAG
GGAGGATTATTGGTTCGGGGGATCCATCGCGACTGCAACAAAAACATGAAGGTGCCGTGCTCGCAATTACGGAGTGTCGA
GTGGTTGAGATCGATAAAGCCACCGCTAGCCATCTTAAAGGGGTTAAACCTGGGATCAACTTACCGATCCTTTTTCTAGA
ACAAGTCATTGGCGTCATTGGCGTATCCGGCGCACCAGACGAAGTGAAGCATTATGGCGAACTGGTTAAGATGACCGCAG
AGCTCATCGTTGAGCAAGCAGCCCTCATGTCTCAAGTGCAATGGAATAAGCGACACAGGGAAGAACTAGTTCTGCAGCTT
ATCTCTGGCGCGACGCTGAATGACAACCAGTTGAATTCCATCGCTGAGCGACTTGGCTTAAATTTGAGTGAGCCGAGAAT
AGCTGCTGTGGTCAAGGTTTTTCCTGATAAACAAACCTCACTCTCGTTGGAGCATTTACAACAGATCGTTCACCTACTTG
AGTATCCTGAACGTGACAATCTCGTTGGTATTTTATCTGTCTCTAATAACGAAGTGGTGGTGTTAAAACCGATAAGCCTC
ACCGACAACGGCTGGTCCAAAGAGGTGGAAACCAAGCGCATCAACCAGTTGCTAAAGCGGGTAAGTAAAGAAGGGAACTT
CTCAATCAAAATTGCGCTCGGAGACTACTTTGAGGGATTGGCAGGATTAGCCCAATCTTTTGAAACTGCCAAACTCACCA
TGCAATTGATGGCTGAGCAATCTGGCACGGTTTTCTTCTACCAAGATCATAAGCTACCTGTGTTGATGAGCGATCTCCTT
TCACAACCTTGGAAAGCCGAACAATTGCAGGCTCCATTACTGAAACTGCAAAAAAAAGACAGCAAAGGCGTGCTACTCAA
AACCCTCACCGCGTATTTTGCTCAGAACTGTGATGCATGTCGAACTTGCCAAGCGCTTCATATCCATCGTAATACCCTCC
GCTATCGAATTGAAAAGATTGAAGATATAACATCATTAAATTTCAATAACTTAAATAACACCTTCCAACTCTATATCGCG
CTAGAGTTGTTCTCCTCAAAACAAATAAATTGTGCAGATGCACAAAAAACAAAGCAGTCAGCTGGGTGA

Upstream 100 bases:

>100_bases
GCCGATTTCTTCTTGAACCCAACGGCCAACAATTTCATGGTCCATTGAGCAATGGCAGTAATAGTGACCATCTAGGATGT
TTTTCTTAAATTCGTAATCC

Downstream 100 bases:

>100_bases
AATTTGTTGTAACGGCTAAAGACCCGATCAGATTCCATCTCTATATTCGAGCAAAAAATACTCTTATCAATAATATGGAA
ATGGAACATGATTGAAGTCT

Product: sugar diacid utilization regulator

Products: NA

Alternate protein names: Sugar diacid regulator [H]

Number of amino acids: Translated: 422; Mature: 422

Protein sequence:

>422_residues
MFFSIDNEIRYYYRQIPTWTPLSSMKLNETIARQIVERTMKIIPYSVNVMDDQGRIIGSGDPSRLQQKHEGAVLAITECR
VVEIDKATASHLKGVKPGINLPILFLEQVIGVIGVSGAPDEVKHYGELVKMTAELIVEQAALMSQVQWNKRHREELVLQL
ISGATLNDNQLNSIAERLGLNLSEPRIAAVVKVFPDKQTSLSLEHLQQIVHLLEYPERDNLVGILSVSNNEVVVLKPISL
TDNGWSKEVETKRINQLLKRVSKEGNFSIKIALGDYFEGLAGLAQSFETAKLTMQLMAEQSGTVFFYQDHKLPVLMSDLL
SQPWKAEQLQAPLLKLQKKDSKGVLLKTLTAYFAQNCDACRTCQALHIHRNTLRYRIEKIEDITSLNFNNLNNTFQLYIA
LELFSSKQINCADAQKTKQSAG

Sequences:

>Translated_422_residues
MFFSIDNEIRYYYRQIPTWTPLSSMKLNETIARQIVERTMKIIPYSVNVMDDQGRIIGSGDPSRLQQKHEGAVLAITECR
VVEIDKATASHLKGVKPGINLPILFLEQVIGVIGVSGAPDEVKHYGELVKMTAELIVEQAALMSQVQWNKRHREELVLQL
ISGATLNDNQLNSIAERLGLNLSEPRIAAVVKVFPDKQTSLSLEHLQQIVHLLEYPERDNLVGILSVSNNEVVVLKPISL
TDNGWSKEVETKRINQLLKRVSKEGNFSIKIALGDYFEGLAGLAQSFETAKLTMQLMAEQSGTVFFYQDHKLPVLMSDLL
SQPWKAEQLQAPLLKLQKKDSKGVLLKTLTAYFAQNCDACRTCQALHIHRNTLRYRIEKIEDITSLNFNNLNNTFQLYIA
LELFSSKQINCADAQKTKQSAG
>Mature_422_residues
MFFSIDNEIRYYYRQIPTWTPLSSMKLNETIARQIVERTMKIIPYSVNVMDDQGRIIGSGDPSRLQQKHEGAVLAITECR
VVEIDKATASHLKGVKPGINLPILFLEQVIGVIGVSGAPDEVKHYGELVKMTAELIVEQAALMSQVQWNKRHREELVLQL
ISGATLNDNQLNSIAERLGLNLSEPRIAAVVKVFPDKQTSLSLEHLQQIVHLLEYPERDNLVGILSVSNNEVVVLKPISL
TDNGWSKEVETKRINQLLKRVSKEGNFSIKIALGDYFEGLAGLAQSFETAKLTMQLMAEQSGTVFFYQDHKLPVLMSDLL
SQPWKAEQLQAPLLKLQKKDSKGVLLKTLTAYFAQNCDACRTCQALHIHRNTLRYRIEKIEDITSLNFNNLNNTFQLYIA
LELFSSKQINCADAQKTKQSAG

Specific function: Seems to regulate the expression of the operons for the enzymes involved in D-galactarate, D-glucarate and D-glycerate utilization [H]

COG id: COG3835

COG function: function code KT; Sugar diacid utilization regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CdaR family [H]

Homologues:

Organism=Escherichia coli, GI87081694, Length=387, Percent_Identity=43.4108527131783, Blast_Score=313, Evalue=9e-87,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008599 [H]

Pfam domain/function: PF05651 Diacid_rec [H]

EC number: NA

Molecular weight: Translated: 47549; Mature: 47549

Theoretical pI: Translated: 7.92; Mature: 7.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFSIDNEIRYYYRQIPTWTPLSSMKLNETIARQIVERTMKIIPYSVNVMDDQGRIIGSG
CEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEECCC
DPSRLQQKHEGAVLAITECRVVEIDKATASHLKGVKPGINLPILFLEQVIGVIGVSGAPD
CHHHHHHHHCCCEEEEECEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHH
EVKHYGELVKMTAELIVEQAALMSQVQWNKRHREELVLQLISGATLNDNQLNSIAERLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
NLSEPRIAAVVKVFPDKQTSLSLEHLQQIVHLLEYPERDNLVGILSVSNNEVVVLKPISL
CCCCCHHEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEE
TDNGWSKEVETKRINQLLKRVSKEGNFSIKIALGDYFEGLAGLAQSFETAKLTMQLMAEQ
CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC
SGTVFFYQDHKLPVLMSDLLSQPWKAEQLQAPLLKLQKKDSKGVLLKTLTAYFAQNCDAC
CCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH
RTCQALHIHRNTLRYRIEKIEDITSLNFNNLNNTFQLYIALELFSSKQINCADAQKTKQS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHC
AG
CC
>Mature Secondary Structure
MFFSIDNEIRYYYRQIPTWTPLSSMKLNETIARQIVERTMKIIPYSVNVMDDQGRIIGSG
CEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEECCC
DPSRLQQKHEGAVLAITECRVVEIDKATASHLKGVKPGINLPILFLEQVIGVIGVSGAPD
CHHHHHHHHCCCEEEEECEEEEEECHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCHH
EVKHYGELVKMTAELIVEQAALMSQVQWNKRHREELVLQLISGATLNDNQLNSIAERLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCC
NLSEPRIAAVVKVFPDKQTSLSLEHLQQIVHLLEYPERDNLVGILSVSNNEVVVLKPISL
CCCCCHHEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCEEEEEEEEE
TDNGWSKEVETKRINQLLKRVSKEGNFSIKIALGDYFEGLAGLAQSFETAKLTMQLMAEQ
CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHCC
SGTVFFYQDHKLPVLMSDLLSQPWKAEQLQAPLLKLQKKDSKGVLLKTLTAYFAQNCDAC
CCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHH
RTCQALHIHRNTLRYRIEKIEDITSLNFNNLNNTFQLYIALELFSSKQINCADAQKTKQS
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCHHHHHHHHC
AG
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8202364; 9278503; 10762278 [H]