| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
Click here to switch to the map view.
The map label for this gene is hutU [H]
Identifier: 37680135
GI number: 37680135
Start: 1939528
End: 1941225
Strand: Direct
Name: hutU [H]
Synonym: VV1951
Alternate gene names: 37680135
Gene position: 1939528-1941225 (Clockwise)
Preceding gene: 37680134
Following gene: 37680136
Centisome position: 57.82
GC content: 53.36
Gene sequence:
>1698_bases ATGACACAGAGCCAAGGACAAGATCCTCGCCTAGACACCAGCCGAACCATTCGCGCCCCTCATGGCACCACGCTAAGAGC CAAGTCATGGTTGACCGAAGCGCCATTGCGCATGCTGATGAACAATTTGGATCCTGATGTGGCTGAGCATCCGCACGCCT TAGTGGTGTATGGCGGCATTGGGCGTGCTGCACGCAATTGGGCATGCTTCGACAAGATTGTTGAAGTGCTTGAGCGCCTG GAAGACGACCAAACTTTGTTGGTTCAATCAGGTAAACCTGTGGGTGTCTTCCCTACGCATAAAAATGCACCACGCGTGCT GATCGCCAACTCTAACCTGGTTCCACACTGGGCAAACTGGGAACACTTCAATGAGCTCGATAAACAAGGCTTGATGATGT ATGGCCAAATGACCGCGGGCAGTTGGATCTACATCGGCTCTCAAGGCATCGTACAGGGTACCTACGAAACCTTCGTCGCT GTTGCAAAAAAACACTTCGCCGGTGAAGCAAAAGGTCGTTGGGTACTCACTGGTGGTCTTGGTGGCATGGGCGGCGCACA GCCACTGGCTGCAACCATGGCGGGCTTCTCGATGATTGCCGTTGAATGTGATGAATCGCGTATCGATTATCGCCTACGTA CGGGTTATGTCGATAAGAAAGCGACCACCCTAGACGAAGCGCTGGCCATCGTCAAAGAATCCGACACGCCTGTCTCTGTT GGCTTACTGGGTAACGCCGCCGATGTGTTCGCAGAATTGGTGGAGCGCAACATCACGCCCGATATCGTCACCGATCAAAC CTCGGCACATGACCCGTTGAATGGCTACTTACCGCAAGGCTGGAGTATGGCCTACGCAGCGGAAATGCGTCAGCAAGATG AAAGCGCTGTCGTCAAAGCCGCAAAACAGTCCATGGCGGTTCAAGTCAAAGCCATGCTTGCACTGCAAACTCGTGGAGCC GCCACGCTCGATTACGGCAACAACATTCGTCAAATGGCGCTAGAAGAAGGGGTCGAGAATGCATTTGATTTCCCGGGCTT CGTGCCAGCCTATATTCGACCTTTGTTCTGCGAAGGCATTGGCCCTTTCCGCTGGGCGGCGCTGTCGGGCGATCCTGAGG ACATTTACAAAACAGACCAAAAAGTGAAAGAGCTGATTCCTGACAATCCTCATTTGCACAATTGGTTGGACATGGCACGC GAGCGTATTCAATTCCAAGGTTTACCCGCACGCATTTGCTGGGTGGGTCTGAAAGATCGCGAGCGCCTAGGTCAGGCATT TAATGAAATGGTGAAAAATGGCGAATTAAAAGCGCCGATCGTGATTGGCCGAGATCATCTAGATTCGGGTTCCGTCGCCA GCCCAAACCGTGAAACGGAAGGCATGATGGACGGTTCAGACGCGGTTTCTGACTGGCCACTGCTCAATGCCCTCCTCAAT ACCGCCGGTGGTGCGACTTGGGTATCACTCCATCATGGTGGTGGTGTAGGCATGGGTTTCTCACAGCACTCTGGAATGGT AATTTGCTGTGACGGAACAGAAGATGCGTCCGCACGTATTGCCCGAGTGCTGCATAACGATCCCGCAACGGGGGTAATGC GCCACGCCGATGCGGGTTACGACATCGCCAAACAGTGCGCAGCGCAACAAGGTCTTGACCTACCGATGCTGAACGAAGAA TTGAGCAAGTTGAAGTAA
Upstream 100 bases:
>100_bases TTGCCAACGCCATGAACGACAAACTCGAACATCAATAAACAGAACAACAATCAGGTGAACCGATGAGTTCACCGCTACGT GAAATTAAAGGAGTCTTACA
Downstream 100 bases:
>100_bases GGAATATGGATATGTTAAATCTCACGCTAAAGCCCGGTTGTCTTAGCTTAAATCAACTGCGTCAAGTCAGTCGTTCGCCC ATCAACCTTTCCCTTGATGC
Product: urocanate hydratase
Products: NA
Alternate protein names: Urocanase; Imidazolonepropionate hydrolase [H]
Number of amino acids: Translated: 565; Mature: 564
Protein sequence:
>565_residues MTQSQGQDPRLDTSRTIRAPHGTTLRAKSWLTEAPLRMLMNNLDPDVAEHPHALVVYGGIGRAARNWACFDKIVEVLERL EDDQTLLVQSGKPVGVFPTHKNAPRVLIANSNLVPHWANWEHFNELDKQGLMMYGQMTAGSWIYIGSQGIVQGTYETFVA VAKKHFAGEAKGRWVLTGGLGGMGGAQPLAATMAGFSMIAVECDESRIDYRLRTGYVDKKATTLDEALAIVKESDTPVSV GLLGNAADVFAELVERNITPDIVTDQTSAHDPLNGYLPQGWSMAYAAEMRQQDESAVVKAAKQSMAVQVKAMLALQTRGA ATLDYGNNIRQMALEEGVENAFDFPGFVPAYIRPLFCEGIGPFRWAALSGDPEDIYKTDQKVKELIPDNPHLHNWLDMAR ERIQFQGLPARICWVGLKDRERLGQAFNEMVKNGELKAPIVIGRDHLDSGSVASPNRETEGMMDGSDAVSDWPLLNALLN TAGGATWVSLHHGGGVGMGFSQHSGMVICCDGTEDASARIARVLHNDPATGVMRHADAGYDIAKQCAAQQGLDLPMLNEE LSKLK
Sequences:
>Translated_565_residues MTQSQGQDPRLDTSRTIRAPHGTTLRAKSWLTEAPLRMLMNNLDPDVAEHPHALVVYGGIGRAARNWACFDKIVEVLERL EDDQTLLVQSGKPVGVFPTHKNAPRVLIANSNLVPHWANWEHFNELDKQGLMMYGQMTAGSWIYIGSQGIVQGTYETFVA VAKKHFAGEAKGRWVLTGGLGGMGGAQPLAATMAGFSMIAVECDESRIDYRLRTGYVDKKATTLDEALAIVKESDTPVSV GLLGNAADVFAELVERNITPDIVTDQTSAHDPLNGYLPQGWSMAYAAEMRQQDESAVVKAAKQSMAVQVKAMLALQTRGA ATLDYGNNIRQMALEEGVENAFDFPGFVPAYIRPLFCEGIGPFRWAALSGDPEDIYKTDQKVKELIPDNPHLHNWLDMAR ERIQFQGLPARICWVGLKDRERLGQAFNEMVKNGELKAPIVIGRDHLDSGSVASPNRETEGMMDGSDAVSDWPLLNALLN TAGGATWVSLHHGGGVGMGFSQHSGMVICCDGTEDASARIARVLHNDPATGVMRHADAGYDIAKQCAAQQGLDLPMLNEE LSKLK >Mature_564_residues TQSQGQDPRLDTSRTIRAPHGTTLRAKSWLTEAPLRMLMNNLDPDVAEHPHALVVYGGIGRAARNWACFDKIVEVLERLE DDQTLLVQSGKPVGVFPTHKNAPRVLIANSNLVPHWANWEHFNELDKQGLMMYGQMTAGSWIYIGSQGIVQGTYETFVAV AKKHFAGEAKGRWVLTGGLGGMGGAQPLAATMAGFSMIAVECDESRIDYRLRTGYVDKKATTLDEALAIVKESDTPVSVG LLGNAADVFAELVERNITPDIVTDQTSAHDPLNGYLPQGWSMAYAAEMRQQDESAVVKAAKQSMAVQVKAMLALQTRGAA TLDYGNNIRQMALEEGVENAFDFPGFVPAYIRPLFCEGIGPFRWAALSGDPEDIYKTDQKVKELIPDNPHLHNWLDMARE RIQFQGLPARICWVGLKDRERLGQAFNEMVKNGELKAPIVIGRDHLDSGSVASPNRETEGMMDGSDAVSDWPLLNALLNT AGGATWVSLHHGGGVGMGFSQHSGMVICCDGTEDASARIARVLHNDPATGVMRHADAGYDIAKQCAAQQGLDLPMLNEEL SKLK
Specific function: Unknown
COG id: COG2987
COG function: function code E; Urocanate hydratase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the urocanase family [H]
Homologues:
Organism=Homo sapiens, GI21389467, Length=548, Percent_Identity=34.4890510948905, Blast_Score=302, Evalue=6e-82, Organism=Homo sapiens, GI260306182, Length=196, Percent_Identity=40.8163265306122, Blast_Score=160, Evalue=2e-39, Organism=Caenorhabditis elegans, GI71997891, Length=583, Percent_Identity=34.3053173241852, Blast_Score=313, Evalue=2e-85,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000193 [H]
Pfam domain/function: PF01175 Urocanase [H]
EC number: =4.2.1.49 [H]
Molecular weight: Translated: 61603; Mature: 61471
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS01233 UROCANASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQSQGQDPRLDTSRTIRAPHGTTLRAKSWLTEAPLRMLMNNLDPDVAEHPHALVVYGGI CCCCCCCCCCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEECCC GRAARNWACFDKIVEVLERLEDDQTLLVQSGKPVGVFPTHKNAPRVLIANSNLVPHWANW CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCEEEEECCCCCCCCCCC EHFNELDKQGLMMYGQMTAGSWIYIGSQGIVQGTYETFVAVAKKHFAGEAKGRWVLTGGL HHHHHHHHCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCC GGMGGAQPLAATMAGFSMIAVECDESRIDYRLRTGYVDKKATTLDEALAIVKESDTPVSV CCCCCCHHHHHHHHCCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE GLLGNAADVFAELVERNITPDIVTDQTSAHDPLNGYLPQGWSMAYAAEMRQQDESAVVKA EECCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AKQSMAVQVKAMLALQTRGAATLDYGNNIRQMALEEGVENAFDFPGFVPAYIRPLFCEGI HHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC GPFRWAALSGDPEDIYKTDQKVKELIPDNPHLHNWLDMARERIQFQGLPARICWVGLKDR CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCH ERLGQAFNEMVKNGELKAPIVIGRDHLDSGSVASPNRETEGMMDGSDAVSDWPLLNALLN HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH TAGGATWVSLHHGGGVGMGFSQHSGMVICCDGTEDASARIARVLHNDPATGVMRHADAGY CCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHCCCCH DIAKQCAAQQGLDLPMLNEELSKLK HHHHHHHHHCCCCCCHHHHHHHHCC >Mature Secondary Structure TQSQGQDPRLDTSRTIRAPHGTTLRAKSWLTEAPLRMLMNNLDPDVAEHPHALVVYGGI CCCCCCCCCCCCCCEEECCCCCEEHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEECCC GRAARNWACFDKIVEVLERLEDDQTLLVQSGKPVGVFPTHKNAPRVLIANSNLVPHWANW CHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEECCCCCCCCEEEEECCCCCCCCCCC EHFNELDKQGLMMYGQMTAGSWIYIGSQGIVQGTYETFVAVAKKHFAGEAKGRWVLTGGL HHHHHHHHCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCC GGMGGAQPLAATMAGFSMIAVECDESRIDYRLRTGYVDKKATTLDEALAIVKESDTPVSV CCCCCCHHHHHHHHCCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCEEE GLLGNAADVFAELVERNITPDIVTDQTSAHDPLNGYLPQGWSMAYAAEMRQQDESAVVKA EECCCHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AKQSMAVQVKAMLALQTRGAATLDYGNNIRQMALEEGVENAFDFPGFVPAYIRPLFCEGI HHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCC GPFRWAALSGDPEDIYKTDQKVKELIPDNPHLHNWLDMARERIQFQGLPARICWVGLKDR CCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCH ERLGQAFNEMVKNGELKAPIVIGRDHLDSGSVASPNRETEGMMDGSDAVSDWPLLNALLN HHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH TAGGATWVSLHHGGGVGMGFSQHSGMVICCDGTEDASARIARVLHNDPATGVMRHADAGY CCCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHCCCCH DIAKQCAAQQGLDLPMLNEELSKLK HHHHHHHHHCCCCCCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA