| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is pgl [H]
Identifier: 37679790
GI number: 37679790
Start: 1652004
End: 1652786
Strand: Direct
Name: pgl [H]
Synonym: VV1606
Alternate gene names: 37679790
Gene position: 1652004-1652786 (Clockwise)
Preceding gene: 37679789
Following gene: 37679791
Centisome position: 49.25
GC content: 47.51
Gene sequence:
>783_bases GTGGCGTTTCCCATGCAAAAACCTAACAGATACGGACTACTGCGAACTATGATCAATCACAAGATCTACCAAACAGCAGA GCAGGTAGTAGAAAGCCTAGCAAACGACATGAAAGCGTTTAGCGAAATGGGCCGACCTGTTCATATCTCACTTTCTGGTG GCAGCACGCCTAAAATGCTGTTTAAGCTTTTGGCATCAGAAACGTACGCAACCTCCATTCAGTGGCAAAATCTTCATTTT TGGTGGGGTGATGAACGTTGCGTGGCACCAGACGATGCTGAGAGCAACTACGGTGAAGCGAATGCTCTTTTGTTCTCAAA ACTAAGAGAATTGAGCCAAGTGAGCATTCCTGCGGAAAACATTCACCGCATCCGTGGTGAAGAGCAACCAGAAGTGGAAG CGGCACGTTTCGCAAAAGAAATGGCAGACGTGATTCCAACCGATAACGGCACACCTGTGTTCGATTGGATTTTGCTTGGT GTTGGCGCAGATGGTCACACGGCGTCGCTTTTCCCAGGTCAAACGAATTATGACGATGAGAACCTGTCAGTATTGGCTTC TCATCCGGAATCTGGACAAATTCGCGTTTCGAAAACGGCACGTGTACTGGAAGCGGCTAAACGCATTAGCTACTTAGTAC TGGGTGCAGGTAAAGCGGACATTGTTGAAGAGATCAACAGCAATCCAGCGGAAGAACTTCCTTACCCGGCAGCAAAAATT CATGCGAAAGCAGGGCTGACGGAATGGTATTTAGATTTAGACGCAGCAGCGAAAATCGCTTAA
Upstream 100 bases:
>100_bases TCCTCGATTTCAAACAAGATCCACAAGCACTCTTTGGTTATGCCTGCGGCACTTGGGGGCCAAAAGAGTCAGACGATTTG CTGCAGCGTGACGATCGCGC
Downstream 100 bases:
>100_bases CCGTCGCAGAAAGAAATATATTGGAGAGAAACAATGAAAGGTGATATCGGTGTAATTGGCCTAGCAGTAATGGGTCAAAA CCTTATCCTGAACATGAACG
Product: 6-phosphogluconolactonase
Products: NA
Alternate protein names: 6PGL [H]
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MAFPMQKPNRYGLLRTMINHKIYQTAEQVVESLANDMKAFSEMGRPVHISLSGGSTPKMLFKLLASETYATSIQWQNLHF WWGDERCVAPDDAESNYGEANALLFSKLRELSQVSIPAENIHRIRGEEQPEVEAARFAKEMADVIPTDNGTPVFDWILLG VGADGHTASLFPGQTNYDDENLSVLASHPESGQIRVSKTARVLEAAKRISYLVLGAGKADIVEEINSNPAEELPYPAAKI HAKAGLTEWYLDLDAAAKIA
Sequences:
>Translated_260_residues MAFPMQKPNRYGLLRTMINHKIYQTAEQVVESLANDMKAFSEMGRPVHISLSGGSTPKMLFKLLASETYATSIQWQNLHF WWGDERCVAPDDAESNYGEANALLFSKLRELSQVSIPAENIHRIRGEEQPEVEAARFAKEMADVIPTDNGTPVFDWILLG VGADGHTASLFPGQTNYDDENLSVLASHPESGQIRVSKTARVLEAAKRISYLVLGAGKADIVEEINSNPAEELPYPAAKI HAKAGLTEWYLDLDAAAKIA >Mature_259_residues AFPMQKPNRYGLLRTMINHKIYQTAEQVVESLANDMKAFSEMGRPVHISLSGGSTPKMLFKLLASETYATSIQWQNLHFW WGDERCVAPDDAESNYGEANALLFSKLRELSQVSIPAENIHRIRGEEQPEVEAARFAKEMADVIPTDNGTPVFDWILLGV GADGHTASLFPGQTNYDDENLSVLASHPESGQIRVSKTARVLEAAKRISYLVLGAGKADIVEEINSNPAEELPYPAAKIH AKAGLTEWYLDLDAAAKIA
Specific function: Hydrolysis of 6-phosphogluconolactone to 6- phosphogluconate [H]
COG id: COG0363
COG function: function code G; 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glucosamine/galactosamine-6-phosphate isomerase family. 6-phosphogluconolactonase subfamily [H]
Homologues:
Organism=Homo sapiens, GI52145310, Length=268, Percent_Identity=33.955223880597, Blast_Score=129, Evalue=2e-30, Organism=Homo sapiens, GI6912586, Length=216, Percent_Identity=33.7962962962963, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI115533058, Length=219, Percent_Identity=31.0502283105023, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI115533060, Length=219, Percent_Identity=31.0502283105023, Blast_Score=93, Evalue=2e-19, Organism=Saccharomyces cerevisiae, GI6321957, Length=218, Percent_Identity=30.2752293577982, Blast_Score=94, Evalue=2e-20, Organism=Saccharomyces cerevisiae, GI6321687, Length=263, Percent_Identity=28.5171102661597, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6324362, Length=214, Percent_Identity=30.8411214953271, Blast_Score=80, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6319918, Length=221, Percent_Identity=28.9592760180996, Blast_Score=76, Evalue=7e-15, Organism=Drosophila melanogaster, GI24641119, Length=240, Percent_Identity=27.9166666666667, Blast_Score=79, Evalue=4e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005900 - InterPro: IPR006148 [H]
Pfam domain/function: PF01182 Glucosamine_iso [H]
EC number: =3.1.1.31 [H]
Molecular weight: Translated: 28685; Mature: 28553
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFPMQKPNRYGLLRTMINHKIYQTAEQVVESLANDMKAFSEMGRPVHISLSGGSTPKML CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH FKLLASETYATSIQWQNLHFWWGDERCVAPDDAESNYGEANALLFSKLRELSQVSIPAEN HHHHHHHHHHCEEEECCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH IHRIRGEEQPEVEAARFAKEMADVIPTDNGTPVFDWILLGVGADGHTASLFPGQTNYDDE HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHEEECCCCCCEEEECCCCCCCCCC NLSVLASHPESGQIRVSKTARVLEAAKRISYLVLGAGKADIVEEINSNPAEELPYPAAKI CCEEEECCCCCCCEEEHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCCHHHCCCCHHHH HAKAGLTEWYLDLDAAAKIA HHHCCCHHHHEEHHHHHCCC >Mature Secondary Structure AFPMQKPNRYGLLRTMINHKIYQTAEQVVESLANDMKAFSEMGRPVHISLSGGSTPKML CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHH FKLLASETYATSIQWQNLHFWWGDERCVAPDDAESNYGEANALLFSKLRELSQVSIPAEN HHHHHHHHHHCEEEECCEEEEECCCEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHH IHRIRGEEQPEVEAARFAKEMADVIPTDNGTPVFDWILLGVGADGHTASLFPGQTNYDDE HHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHEEECCCCCCEEEECCCCCCCCCC NLSVLASHPESGQIRVSKTARVLEAAKRISYLVLGAGKADIVEEINSNPAEELPYPAAKI CCEEEECCCCCCCEEEHHHHHHHHHHHHHEEEEEECCHHHHHHHHCCCCHHHCCCCHHHH HAKAGLTEWYLDLDAAAKIA HHHCCCHHHHEEHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9020051 [H]