| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37679703
Identifier: 37679703
GI number: 37679703
Start: 1554272
End: 1554931
Strand: Direct
Name: 37679703
Synonym: VV1519
Alternate gene names: NA
Gene position: 1554272-1554931 (Clockwise)
Preceding gene: 37679702
Following gene: 37679704
Centisome position: 46.33
GC content: 43.79
Gene sequence:
>660_bases ATGAAACGGATTTGCTTATTGACGATATTGTTCTCATTCTTTCATGGTCAAACACTGGCATTTGAGCTGTTCCCTATGGT GCAGTTTTTGGACGATGCCGGTAAAGGAACCACAGTTTTTTTCAAAATCACCAATACCTCTCTTGCTCCACTACCAGTGG AACTCATTCCAATCAAAAGAGAAGTCTCGCTCAACAACAATGAAACCTTGTCAGAAACCGATGAGCTAATGGTGTTTCCA CCACAAGTGCTGATCGAACCTGGCAAATCGCAGAGCATTAAAGTGCAATACATTGGGGAGCCTAAGCTAAGTGCGGCGTC CTATCGTTTAATTGCCAGCCAACTGCCACTAAAAAATGAATCCAGTAACGACAGCATTCAAATGCTTTTCCGCATTGGTG CACTGATTTTTGTCTCACCTCAGGATGCTCGAGCTGACTATTCAAGCCATTTGACTCAAGGTGAGAATGACGCGGCGCAG TTAACCATTCGTAATGAAGGCACCAGTGTGCTTGAGCTGACCAAACTGAGCCACGAAGTCACTTGGCACAATCAGAAGAT GAACTGGTCTTGGGTTGAGTTAGAAGCGTTATTGCCAATGCAATATTTGGTTCCAAATCAAAGTGTTGTCGTTAATGTGC AATCTTTGCTGGTCAAGTAA
Upstream 100 bases:
>100_bases GCTCGTTGGGGTAAATACGAAGGCTACATGTGGGTATCGCTCTACCATATGTAATTCACTTTGTGGGGGGCGACATGTCC CCCTTTAATTGAGGTGTCGT
Downstream 100 bases:
>100_bases TCACGGCCTTAGGGGCCAAGTAGGTCGATCATGCGGCGATGGTGGTATGCATTCCTATTTCTCTGTTTATGCCCGGTGAG CGGGTTTTGCACGGAGTATC
Product: P pilus assembly protein, chaperone PapD
Products: NA
Alternate protein names: Fimbrial Assembly Protein
Number of amino acids: Translated: 219; Mature: 219
Protein sequence:
>219_residues MKRICLLTILFSFFHGQTLAFELFPMVQFLDDAGKGTTVFFKITNTSLAPLPVELIPIKREVSLNNNETLSETDELMVFP PQVLIEPGKSQSIKVQYIGEPKLSAASYRLIASQLPLKNESSNDSIQMLFRIGALIFVSPQDARADYSSHLTQGENDAAQ LTIRNEGTSVLELTKLSHEVTWHNQKMNWSWVELEALLPMQYLVPNQSVVVNVQSLLVK
Sequences:
>Translated_219_residues MKRICLLTILFSFFHGQTLAFELFPMVQFLDDAGKGTTVFFKITNTSLAPLPVELIPIKREVSLNNNETLSETDELMVFP PQVLIEPGKSQSIKVQYIGEPKLSAASYRLIASQLPLKNESSNDSIQMLFRIGALIFVSPQDARADYSSHLTQGENDAAQ LTIRNEGTSVLELTKLSHEVTWHNQKMNWSWVELEALLPMQYLVPNQSVVVNVQSLLVK >Mature_219_residues MKRICLLTILFSFFHGQTLAFELFPMVQFLDDAGKGTTVFFKITNTSLAPLPVELIPIKREVSLNNNETLSETDELMVFP PQVLIEPGKSQSIKVQYIGEPKLSAASYRLIASQLPLKNESSNDSIQMLFRIGALIFVSPQDARADYSSHLTQGENDAAQ LTIRNEGTSVLELTKLSHEVTWHNQKMNWSWVELEALLPMQYLVPNQSVVVNVQSLLVK
Specific function: Unknown
COG id: COG3121
COG function: function code NU; P pilus assembly protein, chaperone PapD
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24622; Mature: 24622
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRICLLTILFSFFHGQTLAFELFPMVQFLDDAGKGTTVFFKITNTSLAPLPVELIPIKR CCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEE EVSLNNNETLSETDELMVFPPQVLIEPGKSQSIKVQYIGEPKLSAASYRLIASQLPLKNE EEECCCCCCCCCCCCEEEECCHHEECCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCC SSNDSIQMLFRIGALIFVSPQDARADYSSHLTQGENDAAQLTIRNEGTSVLELTKLSHEV CCCHHHHHHHHHCEEEEECCCHHCCCHHHHCCCCCCCEEEEEECCCCCCEEEEEHHHEEE TWHNQKMNWSWVELEALLPMQYLVPNQSVVVNVQSLLVK EECCCCCCCEEEEEEECCCEEHCCCCCEEEEEHHHHHCC >Mature Secondary Structure MKRICLLTILFSFFHGQTLAFELFPMVQFLDDAGKGTTVFFKITNTSLAPLPVELIPIKR CCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCEEEEEEEE EVSLNNNETLSETDELMVFPPQVLIEPGKSQSIKVQYIGEPKLSAASYRLIASQLPLKNE EEECCCCCCCCCCCCEEEECCHHEECCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCC SSNDSIQMLFRIGALIFVSPQDARADYSSHLTQGENDAAQLTIRNEGTSVLELTKLSHEV CCCHHHHHHHHHCEEEEECCCHHCCCHHHHCCCCCCCEEEEEECCCCCCEEEEEHHHEEE TWHNQKMNWSWVELEALLPMQYLVPNQSVVVNVQSLLVK EECCCCCCCEEEEEEECCCEEHCCCCCEEEEEHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA