| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is 37679616
Identifier: 37679616
GI number: 37679616
Start: 1460306
End: 1462759
Strand: Direct
Name: 37679616
Synonym: VV1432
Alternate gene names: NA
Gene position: 1460306-1462759 (Clockwise)
Preceding gene: 37679615
Following gene: 37679617
Centisome position: 43.53
GC content: 46.78
Gene sequence:
>2454_bases ATGTTATGGCCCGTAGTTAAGGCACTACTCGGTCACTACAGACGTTACCCGCTACAAATATTATTGGTGTGGCTTGGCCT CACGTTAGGCGTGTCTTTATTGGTTGGCGTCACAGCCATCAATCACCATGCGCAAGAAAGCTATCAAAACGGCGAGAAAC TCTTCAATAACCCTTTGCCATATCGCATTCGTCCAAAACACAGCGCCAATAAGATTCCCCAAGGTTTTTATATTCAATTA CGCCGAGCCGGTTTTCAGCAATGCACGCCATTTGATATGCACCATATCAAAACGGCAGATGGTATGGGGTTGATGTTGAT TGGTATGGATCCGGTTGCCATGCTGCAGTTGGAGAAAGAGACCTCTTTAAATCGCGCCACCTCACTGGCGTTAATGAACC CGCCTTATCCCATTCTTATTAGCCAAGATCTTGCTGAGCACATGGCGTGGCAAGATGGCGACTTTATTGCTTTAGAAGAT GGCAGCCAGCTGGGGCCTTTACGTGTTGACCGTGAACAACGCTTAAATGGCAGCCGTATGGTCGCTGACATTTCATTGTT ACGTATGCTAAAGCGCAGCTCAGGTTTATCGGTGATCGCTTGTGCAGAAATGCCGCCAGAGAAGCTAGAACATCTTAAAC GTTATTTGCCCAATGGTTTGACGCTGGTTCGAAACAGCCAAGATGAACTGGAATCATTGACCAAAGCATTTCACCTTAAT CTGACTGCAATGGGGATGCTTTCTTTCCTCGTTGGCTTATTTATTTTCTATCAAGCGATGTCGTTATCGCTTATCCAGCG TCAACCGCTTGTTGGTATTATGCGACAAACGGGTGTGACTGGCATGCAGCTAGCCAAAGCTTTGTTACTCGAGTTGACCA TTTTGGTTTTGGTTGCTTGGGCTTGTGGCAATGTTTTAGGGTTGTTTTTGGCAAATGAATTGATCCCTGCTGTTTCTGCT AGTTTAGGGGATTTGTACGATGCCAACGTAGGCTTGTCGATTGGCTGGAGTTGGGAGTCGAGCTTATACAGTTTGCTTCT GGCGGTACTTGGCGCATTGATATCGTGTTTGTGGCCGCTCATTCGCTTGTTGAAATCTCAGCCCATTCGTTTGTCCGCTA AGTTATCGTTGGTGCGTTTTGCAGGCAAAGAGTTCGCTTGGCAAGCTCTCGCTGCTTGTGGTTTCGCCGTAGCGGCGATT GCCGTTTATCAAGCACCGAAGACGCCAGAATCGGGCTTTACAATCATTGCATTGATGTTGATGAGTGTGGCGCTGTTCAT GCCTTTTTTAATGTGGAAGGTATTTAACAGCTTCTCTTATACTTTGCGCTGGGTGAATTTACGTTGGTTTTTCGCCGATA TGGCTGCCAGTATGAGTTATCGTGGTGTTGCCATGATGGCGTTTATGTTGGCGTTGGCGGCCAACATTGGTGTCGAAACC ATGGTCGGCAGTTTTAGAGACACCACCGATAAGTGGTTAACCCAGCGTTTAGCTGCGGATCTTTACATTTATCCAACCAA CAATTCTGCGGCGAGATTGAGTAACTGGCTTGAAGCCCAACCGGAAGTGGATGAAGTTTGGTGGCGTTGGGAGAAAGAAC TGGCGGATGAGCGTGATATCGTTCAAGTGGTCAGTACTGGCCCAAGCGACGGCGAGTTGGAAGCACTAACTGTAAAATTA GGTGTGCCTAATTATTGGTATCATTTACATCACAGTAAAAGCGTCATGATCAGTGAATCGATGGCGTTAAAACTCGATAT CCGACCAGGCGATTATCTCGATCTTGCTGCGCCATTAGGTGGAGGCTGGCTGGTCGTTGGGGTGTATTACGATTACGGCA ATCCTTACAATCAAGTGTTGCTGTCTCACCGCAACTGGCTGTATGCGTTTGCAGGCTCTGGCAACGTGGGCTTAGGCGTG TTGCTCAAAGACAACGTCAATGGCGAGGGCCTCAAGCATCGCTTGGAAAACATCTTTAGACTGACGTCTGAACGAGTGTT TGATAACAACAACATTTATAGTCAAGCGATGCGAGTCTTTGATCATACCTTCGCTATTGCAGATACCTTAGGAAATATCA CGCTGGTGATCGCCGTTTTTGGCCTTTTCTTCGCGACGTTAGCAGGAGAGATGAGCCGTCAAAAGAATATTTCTATTTTG AGATGTCTGGGTGTTTCGGGTAAAGAACTCATTATTCTTGGTGGTTTACAGTTATTTGTGTTCGGCGTGATTTCCGCTCT TATCGCGGTTCCACTCGGTATGGCGCTTGCCACGTTGGTGGTGGATATAGTGATTAAGCAGTCGTTTGGTTGGTCTTTGC AATTGCAAATCGATGTGATTGAGTACGGAGAGACCATTCTTTGGGCGATGATTGCGATTATGCTTGCTGGCGCATTACCC GTTATCCGTCTGGTTAAGAACACGCCAATGAAATCATTAAGGGATTCATTCTAG
Upstream 100 bases:
>100_bases CTTACCCGTCAGCTAGACTGCACCTTATTGTTGGTAACACACAGTGAAAAAGTGGCCAAACACATGGAAGGGATGATTCG CCTGCAAGGGGGACAACTGC
Downstream 100 bases:
>100_bases ATGAAGTGGTTAGCTGGAAAATCCAATAATCTTGCATTAATGCTCACTTTTCTTTTAGCGGCTATGGTGACAGCTGCGAT GGGCTTTTATTGGTCTCAAT
Product: peptide ABC transporter permease
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 817; Mature: 817
Protein sequence:
>817_residues MLWPVVKALLGHYRRYPLQILLVWLGLTLGVSLLVGVTAINHHAQESYQNGEKLFNNPLPYRIRPKHSANKIPQGFYIQL RRAGFQQCTPFDMHHIKTADGMGLMLIGMDPVAMLQLEKETSLNRATSLALMNPPYPILISQDLAEHMAWQDGDFIALED GSQLGPLRVDREQRLNGSRMVADISLLRMLKRSSGLSVIACAEMPPEKLEHLKRYLPNGLTLVRNSQDELESLTKAFHLN LTAMGMLSFLVGLFIFYQAMSLSLIQRQPLVGIMRQTGVTGMQLAKALLLELTILVLVAWACGNVLGLFLANELIPAVSA SLGDLYDANVGLSIGWSWESSLYSLLLAVLGALISCLWPLIRLLKSQPIRLSAKLSLVRFAGKEFAWQALAACGFAVAAI AVYQAPKTPESGFTIIALMLMSVALFMPFLMWKVFNSFSYTLRWVNLRWFFADMAASMSYRGVAMMAFMLALAANIGVET MVGSFRDTTDKWLTQRLAADLYIYPTNNSAARLSNWLEAQPEVDEVWWRWEKELADERDIVQVVSTGPSDGELEALTVKL GVPNYWYHLHHSKSVMISESMALKLDIRPGDYLDLAAPLGGGWLVVGVYYDYGNPYNQVLLSHRNWLYAFAGSGNVGLGV LLKDNVNGEGLKHRLENIFRLTSERVFDNNNIYSQAMRVFDHTFAIADTLGNITLVIAVFGLFFATLAGEMSRQKNISIL RCLGVSGKELIILGGLQLFVFGVISALIAVPLGMALATLVVDIVIKQSFGWSLQLQIDVIEYGETILWAMIAIMLAGALP VIRLVKNTPMKSLRDSF
Sequences:
>Translated_817_residues MLWPVVKALLGHYRRYPLQILLVWLGLTLGVSLLVGVTAINHHAQESYQNGEKLFNNPLPYRIRPKHSANKIPQGFYIQL RRAGFQQCTPFDMHHIKTADGMGLMLIGMDPVAMLQLEKETSLNRATSLALMNPPYPILISQDLAEHMAWQDGDFIALED GSQLGPLRVDREQRLNGSRMVADISLLRMLKRSSGLSVIACAEMPPEKLEHLKRYLPNGLTLVRNSQDELESLTKAFHLN LTAMGMLSFLVGLFIFYQAMSLSLIQRQPLVGIMRQTGVTGMQLAKALLLELTILVLVAWACGNVLGLFLANELIPAVSA SLGDLYDANVGLSIGWSWESSLYSLLLAVLGALISCLWPLIRLLKSQPIRLSAKLSLVRFAGKEFAWQALAACGFAVAAI AVYQAPKTPESGFTIIALMLMSVALFMPFLMWKVFNSFSYTLRWVNLRWFFADMAASMSYRGVAMMAFMLALAANIGVET MVGSFRDTTDKWLTQRLAADLYIYPTNNSAARLSNWLEAQPEVDEVWWRWEKELADERDIVQVVSTGPSDGELEALTVKL GVPNYWYHLHHSKSVMISESMALKLDIRPGDYLDLAAPLGGGWLVVGVYYDYGNPYNQVLLSHRNWLYAFAGSGNVGLGV LLKDNVNGEGLKHRLENIFRLTSERVFDNNNIYSQAMRVFDHTFAIADTLGNITLVIAVFGLFFATLAGEMSRQKNISIL RCLGVSGKELIILGGLQLFVFGVISALIAVPLGMALATLVVDIVIKQSFGWSLQLQIDVIEYGETILWAMIAIMLAGALP VIRLVKNTPMKSLRDSF >Mature_817_residues MLWPVVKALLGHYRRYPLQILLVWLGLTLGVSLLVGVTAINHHAQESYQNGEKLFNNPLPYRIRPKHSANKIPQGFYIQL RRAGFQQCTPFDMHHIKTADGMGLMLIGMDPVAMLQLEKETSLNRATSLALMNPPYPILISQDLAEHMAWQDGDFIALED GSQLGPLRVDREQRLNGSRMVADISLLRMLKRSSGLSVIACAEMPPEKLEHLKRYLPNGLTLVRNSQDELESLTKAFHLN LTAMGMLSFLVGLFIFYQAMSLSLIQRQPLVGIMRQTGVTGMQLAKALLLELTILVLVAWACGNVLGLFLANELIPAVSA SLGDLYDANVGLSIGWSWESSLYSLLLAVLGALISCLWPLIRLLKSQPIRLSAKLSLVRFAGKEFAWQALAACGFAVAAI AVYQAPKTPESGFTIIALMLMSVALFMPFLMWKVFNSFSYTLRWVNLRWFFADMAASMSYRGVAMMAFMLALAANIGVET MVGSFRDTTDKWLTQRLAADLYIYPTNNSAARLSNWLEAQPEVDEVWWRWEKELADERDIVQVVSTGPSDGELEALTVKL GVPNYWYHLHHSKSVMISESMALKLDIRPGDYLDLAAPLGGGWLVVGVYYDYGNPYNQVLLSHRNWLYAFAGSGNVGLGV LLKDNVNGEGLKHRLENIFRLTSERVFDNNNIYSQAMRVFDHTFAIADTLGNITLVIAVFGLFFATLAGEMSRQKNISIL RCLGVSGKELIILGGLQLFVFGVISALIAVPLGMALATLVVDIVIKQSFGWSLQLQIDVIEYGETILWAMIAIMLAGALP VIRLVKNTPMKSLRDSF
Specific function: Unknown
COG id: COG0577
COG function: function code V; ABC-type antimicrobial peptide transport system, permease component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 90833; Mature: 90833
Theoretical pI: Translated: 7.90; Mature: 7.90
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.2 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLWPVVKALLGHYRRYPLQILLVWLGLTLGVSLLVGVTAINHHAQESYQNGEKLFNNPLP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC YRIRPKHSANKIPQGFYIQLRRAGFQQCTPFDMHHIKTADGMGLMLIGMDPVAMLQLEKE EEECCCCCCCCCCCCHHHHEECCCCCCCCCCCHHHEECCCCCEEEEECCCCHHHEEEHHH TSLNRATSLALMNPPYPILISQDLAEHMAWQDGDFIALEDGSQLGPLRVDREQRLNGSRM HCHHHHHEEEEECCCCCEEECHHHHHHHCCCCCCEEEECCCCCCCCEECCHHHCCCCCHH VADISLLRMLKRSSGLSVIACAEMPPEKLEHLKRYLPNGLTLVRNSQDELESLTKAFHLN HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCC LTAMGMLSFLVGLFIFYQAMSLSLIQRQPLVGIMRQTGVTGMQLAKALLLELTILVLVAW HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH ACGNVLGLFLANELIPAVSASLGDLYDANVGLSIGWSWESSLYSLLLAVLGALISCLWPL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH IRLLKSQPIRLSAKLSLVRFAGKEFAWQALAACGFAVAAIAVYQAPKTPESGFTIIALML HHHHCCCCCEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH MSVALFMPFLMWKVFNSFSYTLRWVNLRWFFADMAASMSYRGVAMMAFMLALAANIGVET HHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHH MVGSFRDTTDKWLTQRLAADLYIYPTNNSAARLSNWLEAQPEVDEVWWRWEKELADERDI HHHHHCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHH VQVVSTGPSDGELEALTVKLGVPNYWYHLHHSKSVMISESMALKLDIRPGDYLDLAAPLG HHHHHCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEECCEEEEEECCCCCCEEECCCCC GGWLVVGVYYDYGNPYNQVLLSHRNWLYAFAGSGNVGLGVLLKDNVNGEGLKHRLENIFR CCEEEEEEEECCCCCHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHH LTSERVFDNNNIYSQAMRVFDHTFAIADTLGNITLVIAVFGLFFATLAGEMSRQKNISIL HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE RCLGVSGKELIILGGLQLFVFGVISALIAVPLGMALATLVVDIVIKQSFGWSLQLQIDVI EEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEH EYGETILWAMIAIMLAGALPVIRLVKNTPMKSLRDSF HHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC >Mature Secondary Structure MLWPVVKALLGHYRRYPLQILLVWLGLTLGVSLLVGVTAINHHAQESYQNGEKLFNNPLP CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCC YRIRPKHSANKIPQGFYIQLRRAGFQQCTPFDMHHIKTADGMGLMLIGMDPVAMLQLEKE EEECCCCCCCCCCCCHHHHEECCCCCCCCCCCHHHEECCCCCEEEEECCCCHHHEEEHHH TSLNRATSLALMNPPYPILISQDLAEHMAWQDGDFIALEDGSQLGPLRVDREQRLNGSRM HCHHHHHEEEEECCCCCEEECHHHHHHHCCCCCCEEEECCCCCCCCEECCHHHCCCCCHH VADISLLRMLKRSSGLSVIACAEMPPEKLEHLKRYLPNGLTLVRNSQDELESLTKAFHLN HHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHCC LTAMGMLSFLVGLFIFYQAMSLSLIQRQPLVGIMRQTGVTGMQLAKALLLELTILVLVAW HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH ACGNVLGLFLANELIPAVSASLGDLYDANVGLSIGWSWESSLYSLLLAVLGALISCLWPL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHH IRLLKSQPIRLSAKLSLVRFAGKEFAWQALAACGFAVAAIAVYQAPKTPESGFTIIALML HHHHCCCCCEEEHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH MSVALFMPFLMWKVFNSFSYTLRWVNLRWFFADMAASMSYRGVAMMAFMLALAANIGVET HHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHH MVGSFRDTTDKWLTQRLAADLYIYPTNNSAARLSNWLEAQPEVDEVWWRWEKELADERDI HHHHHCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHH VQVVSTGPSDGELEALTVKLGVPNYWYHLHHSKSVMISESMALKLDIRPGDYLDLAAPLG HHHHHCCCCCCCEEEEEEEECCCCEEEEEECCCEEEEECCEEEEEECCCCCCEEECCCCC GGWLVVGVYYDYGNPYNQVLLSHRNWLYAFAGSGNVGLGVLLKDNVNGEGLKHRLENIFR CCEEEEEEEECCCCCHHHHHHHCCCEEEEEECCCCCEEEEEEECCCCCHHHHHHHHHHHH LTSERVFDNNNIYSQAMRVFDHTFAIADTLGNITLVIAVFGLFFATLAGEMSRQKNISIL HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCEEE RCLGVSGKELIILGGLQLFVFGVISALIAVPLGMALATLVVDIVIKQSFGWSLQLQIDVI EEECCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEH EYGETILWAMIAIMLAGALPVIRLVKNTPMKSLRDSF HHCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA