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The map label for this gene is oppA [H]

Identifier: 37679387

GI number: 37679387

Start: 1218034

End: 1219716

Strand: Direct

Name: oppA [H]

Synonym: VV1203

Alternate gene names: 37679387

Gene position: 1218034-1219716 (Clockwise)

Preceding gene: 37679386

Following gene: 37679388

Centisome position: 36.31

GC content: 45.69

Gene sequence:

>1683_bases
GTGTTTTGGCAAAGAAGTCATGGATGCAAATATAAAACTTGGAGTTTATGCATGTATAAGAACAAAATCACCCAAGCACT
TCTTCTTGGTGCTGGTCTAACACTCGCAACTACCTCTCTTTCTGCTCTTGCCGCAGACGTACCAGCTGGAACTAAATTAG
CAGCAAAACAAGAACTCGTTCGTGGTAACGGTACTGAGGTTGCTACTATCGACCCGCACAAATCTCAAGGCGTGCCAGAG
TCACATGTGATTCGTGACCTATTGGAAGGTCTAGTAAACCAAGATGCAGACGGCAACACCATCCCTGGTGTCGCAACGAG
CTGGGAAACGACGGACAACAAGACCTTTACTTTCCACCTACGTAAAGATGCAAAATGGTCTAACGGCGACCCTGTTACCG
CGCAAGATTTCGTATACAGCTGGCAACGTGCTGTCGATCCAGCAACAGCATCGCCATACTCTTGGTATATGGAATACACC
AAGATGAAAAACGCGAAAGACATTGTTGCAGGTAAGAAAGACAAGTCTGAGCTTGGTGTAAAAGCGGCTGACGATTACAC
GCTAGTGATTGAGCTTGAAACGGCGGTTCCTTACTTTGTGATGATGACTGGCCACACCACCATGAAACCAGTACACAAAG
CAACGGTAGAGAAGTTTGGTGATCAATGGACTAAGCCAGAAAACTTCGTTGGTAACGGTGCGTTTGTTGTAGACAAATGG
GTTGTTAACGAACGTTTAGAAATGGTTCGTAACACCAAGTACTGGGATGACTCTAAGACAGTGATCAACAAAGTCACTTT
CCTACCAATCGAAAACGCGGTTGCAGAAATGAACCGTTTCCTTTCGGGTGAAATTGACTTTACATCAACTCTACCAACTG
AACACTTCAAGCGTCTGAAAAAAGAACACCCAGAATCGGTTTCTGTTGAAGGCAGCCTATGTACTTACTACTATTCTTTC
AACACGAAGAAAAAGCCGTTTGATGACGTACGTGTACGTAAAGCGATCTCTTACGCGATTGACCGTGACATCGTAGCAAA
CGCGATCTTAGGTCAGGGTCAGAAGCCAGCGTATTTCCTAACGCCAGAGATCACTGCAAACTTCAACCCAGAACTTCCTG
AGTACGGTAAAATGTCTCAGAAAGAGCGTAACGCAGAAGCGGCTCGCCTACTTGAAGAAGCGGGTTACGGCAAAGGCAAC
CCTCTGAAGTTTACTTTGCTTTACAACACCAACGAAAACCACAAGAAGATCGCCGTTGCGCTCGGTTCTATGTGGAAGAA
AACACTTGGTCTAGATGTTAATCTTGAAAACCAAGAGTGGAAAACTTACCTATCTACTAAAGATCAAGGTGATTTCGAAG
TGGCACGCGCCGGTTGGTGTGGCGACTACAACGAAGCATCTTCGTTCCTAACTCTGATGGTGAGCGCGAATACAACGGGT
GGTCAGCACTGGGGTAATGCAGAGTATGATGCTCTGATCGACAAAGCGCTGAAGTCAACATCTGAAGCAGAGCGTACTGC
GCTGTACTTGGATGCTGAAAATCTGATGGCAAAAGATATGCCTATCGCACCAATCTACCAATATGTACGTTCGCGTCTAC
TAAATCCACGTGTTGGTGGTTTCCCATCAAACAACGCGGAAGAGAAGATCTACTCAAAAGATCTCTACATCATCGCGAAG
TAA

Upstream 100 bases:

>100_bases
TACTTCAATGATTGCTAATGTGTGCCGCAATCTTTGCAATGCTTTTAGTTGTTTTGTTTTCTAAAACGCAGCTAAAAAGT
TCTAAAACACTGCCGTTCTG

Downstream 100 bases:

>100_bases
TCACCTAAGCTGATAACTATAAAAAATAGAGACACTGCATGTGGTATGGCCGCATGCAGCGTCTAATTTCATTTAAACTG
TCACAGACTGAAAGAGTGAG

Product: ABC-type oligopeptide transport system, periplasmic component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MFWQRSHGCKYKTWSLCMYKNKITQALLLGAGLTLATTSLSALAADVPAGTKLAAKQELVRGNGTEVATIDPHKSQGVPE
SHVIRDLLEGLVNQDADGNTIPGVATSWETTDNKTFTFHLRKDAKWSNGDPVTAQDFVYSWQRAVDPATASPYSWYMEYT
KMKNAKDIVAGKKDKSELGVKAADDYTLVIELETAVPYFVMMTGHTTMKPVHKATVEKFGDQWTKPENFVGNGAFVVDKW
VVNERLEMVRNTKYWDDSKTVINKVTFLPIENAVAEMNRFLSGEIDFTSTLPTEHFKRLKKEHPESVSVEGSLCTYYYSF
NTKKKPFDDVRVRKAISYAIDRDIVANAILGQGQKPAYFLTPEITANFNPELPEYGKMSQKERNAEAARLLEEAGYGKGN
PLKFTLLYNTNENHKKIAVALGSMWKKTLGLDVNLENQEWKTYLSTKDQGDFEVARAGWCGDYNEASSFLTLMVSANTTG
GQHWGNAEYDALIDKALKSTSEAERTALYLDAENLMAKDMPIAPIYQYVRSRLLNPRVGGFPSNNAEEKIYSKDLYIIAK

Sequences:

>Translated_560_residues
MFWQRSHGCKYKTWSLCMYKNKITQALLLGAGLTLATTSLSALAADVPAGTKLAAKQELVRGNGTEVATIDPHKSQGVPE
SHVIRDLLEGLVNQDADGNTIPGVATSWETTDNKTFTFHLRKDAKWSNGDPVTAQDFVYSWQRAVDPATASPYSWYMEYT
KMKNAKDIVAGKKDKSELGVKAADDYTLVIELETAVPYFVMMTGHTTMKPVHKATVEKFGDQWTKPENFVGNGAFVVDKW
VVNERLEMVRNTKYWDDSKTVINKVTFLPIENAVAEMNRFLSGEIDFTSTLPTEHFKRLKKEHPESVSVEGSLCTYYYSF
NTKKKPFDDVRVRKAISYAIDRDIVANAILGQGQKPAYFLTPEITANFNPELPEYGKMSQKERNAEAARLLEEAGYGKGN
PLKFTLLYNTNENHKKIAVALGSMWKKTLGLDVNLENQEWKTYLSTKDQGDFEVARAGWCGDYNEASSFLTLMVSANTTG
GQHWGNAEYDALIDKALKSTSEAERTALYLDAENLMAKDMPIAPIYQYVRSRLLNPRVGGFPSNNAEEKIYSKDLYIIAK
>Mature_560_residues
MFWQRSHGCKYKTWSLCMYKNKITQALLLGAGLTLATTSLSALAADVPAGTKLAAKQELVRGNGTEVATIDPHKSQGVPE
SHVIRDLLEGLVNQDADGNTIPGVATSWETTDNKTFTFHLRKDAKWSNGDPVTAQDFVYSWQRAVDPATASPYSWYMEYT
KMKNAKDIVAGKKDKSELGVKAADDYTLVIELETAVPYFVMMTGHTTMKPVHKATVEKFGDQWTKPENFVGNGAFVVDKW
VVNERLEMVRNTKYWDDSKTVINKVTFLPIENAVAEMNRFLSGEIDFTSTLPTEHFKRLKKEHPESVSVEGSLCTYYYSF
NTKKKPFDDVRVRKAISYAIDRDIVANAILGQGQKPAYFLTPEITANFNPELPEYGKMSQKERNAEAARLLEEAGYGKGN
PLKFTLLYNTNENHKKIAVALGSMWKKTLGLDVNLENQEWKTYLSTKDQGDFEVARAGWCGDYNEASSFLTLMVSANTTG
GQHWGNAEYDALIDKALKSTSEAERTALYLDAENLMAKDMPIAPIYQYVRSRLLNPRVGGFPSNNAEEKIYSKDLYIIAK

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=538, Percent_Identity=51.8587360594795, Blast_Score=580, Evalue=1e-167,
Organism=Escherichia coli, GI87081878, Length=528, Percent_Identity=50.3787878787879, Blast_Score=549, Evalue=1e-157,
Organism=Escherichia coli, GI1789397, Length=517, Percent_Identity=43.9071566731141, Blast_Score=441, Evalue=1e-125,
Organism=Escherichia coli, GI1787762, Length=528, Percent_Identity=24.4318181818182, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1789966, Length=467, Percent_Identity=24.4111349036403, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1789887, Length=542, Percent_Identity=25.4612546125461, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1787052, Length=497, Percent_Identity=24.1448692152917, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI1787551, Length=518, Percent_Identity=22.5868725868726, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 62818; Mature: 62818

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFWQRSHGCKYKTWSLCMYKNKITQALLLGAGLTLATTSLSALAADVPAGTKLAAKQELV
CCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RGNGTEVATIDPHKSQGVPESHVIRDLLEGLVNQDADGNTIPGVATSWETTDNKTFTFHL
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEE
RKDAKWSNGDPVTAQDFVYSWQRAVDPATASPYSWYMEYTKMKNAKDIVAGKKDKSELGV
ECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHCCC
KAADDYTLVIELETAVPYFVMMTGHTTMKPVHKATVEKFGDQWTKPENFVGNGAFVVDKW
EECCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHH
VVNERLEMVRNTKYWDDSKTVINKVTFLPIENAVAEMNRFLSGEIDFTSTLPTEHFKRLK
HHHHHHHHHHCCCCCCCCHHHHHEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KEHPESVSVEGSLCTYYYSFNTKKKPFDDVRVRKAISYAIDRDIVANAILGQGQKPAYFL
HHCCCCEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
TPEITANFNPELPEYGKMSQKERNAEAARLLEEAGYGKGNPLKFTLLYNTNENHKKIAVA
CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEHH
LGSMWKKTLGLDVNLENQEWKTYLSTKDQGDFEVARAGWCGDYNEASSFLTLMVSANTTG
HHHHHHHHHCCEEEECCHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCEEEEEEECCCCC
GQHWGNAEYDALIDKALKSTSEAERTALYLDAENLMAKDMPIAPIYQYVRSRLLNPRVGG
CCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
FPSNNAEEKIYSKDLYIIAK
CCCCCCHHHHCCCCEEEEEC
>Mature Secondary Structure
MFWQRSHGCKYKTWSLCMYKNKITQALLLGAGLTLATTSLSALAADVPAGTKLAAKQELV
CCCCCCCCCCCEEEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
RGNGTEVATIDPHKSQGVPESHVIRDLLEGLVNQDADGNTIPGVATSWETTDNKTFTFHL
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEE
RKDAKWSNGDPVTAQDFVYSWQRAVDPATASPYSWYMEYTKMKNAKDIVAGKKDKSELGV
ECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHCCCCCHHHCCC
KAADDYTLVIELETAVPYFVMMTGHTTMKPVHKATVEKFGDQWTKPENFVGNGAFVVDKW
EECCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEHH
VVNERLEMVRNTKYWDDSKTVINKVTFLPIENAVAEMNRFLSGEIDFTSTLPTEHFKRLK
HHHHHHHHHHCCCCCCCCHHHHHEEEEEEHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
KEHPESVSVEGSLCTYYYSFNTKKKPFDDVRVRKAISYAIDRDIVANAILGQGQKPAYFL
HHCCCCEEECCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
TPEITANFNPELPEYGKMSQKERNAEAARLLEEAGYGKGNPLKFTLLYNTNENHKKIAVA
CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEHH
LGSMWKKTLGLDVNLENQEWKTYLSTKDQGDFEVARAGWCGDYNEASSFLTLMVSANTTG
HHHHHHHHHCCEEEECCHHHHHHHCCCCCCCEEEEECCCCCCHHHCCCEEEEEEECCCCC
GQHWGNAEYDALIDKALKSTSEAERTALYLDAENLMAKDMPIAPIYQYVRSRLLNPRVGG
CCCCCCCHHHHHHHHHHHCCCCHHHEEEEEEHHHHHHCCCCCHHHHHHHHHHHCCCCCCC
FPSNNAEEKIYSKDLYIIAK
CCCCCCHHHHCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2821267; 3525163; 11677609; 8202710; 8747465; 10422831; 10438628 [H]