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The map label for this gene is ydjA [H]

Identifier: 37679338

GI number: 37679338

Start: 1167488

End: 1168033

Strand: Direct

Name: ydjA [H]

Synonym: VV1154

Alternate gene names: 37679338

Gene position: 1167488-1168033 (Clockwise)

Preceding gene: 37679337

Following gene: 37679339

Centisome position: 34.8

GC content: 51.47

Gene sequence:

>546_bases
ATGGACGCTCTCGATCTTCTACTTAATCGTCGTTCTATTGGTAAATTGGCCGCTCCAGCCCCAGAAGGCAAAGCACTTGA
AAATATCATTCGTGCGGGATTAAGAGCCCCAGATCACGGCGCGCTGACGCCTTGGCGCTTTGTCATCGCGCAAGGCTCTG
GCCTGCATAAGTTGTCAGACATCCTAGTGAAGGCGGCACAGGCCAAAGGCAGTGAATCGGTGGTGGAAAAAGTGAAAAAT
GCCCCATTTCGTGCGCCGATGGTGATCACCGTGATTGCGAAAGTGACCGAGAGTGAAAAAGTCCCGGCATTTGAACAGCA
TCTTTCCGCGGGTTGTGCTGTGCAAGCAATGCAAATGGCGGCTGTGGCTCAAGGATTCCAAGGTTTTTGGCGTTCGGGTG
AATGGATGTTCGATACGGAAGTGAGACAAGCGTTTGGCTTACAGGGAGACGATGCCATTGTGGGCTTCCTCTACTTGGGC
AGCGCAGAATGTTCCGCGATGAAAGTGCCAGAGCGTGATCTGGCTAAATTTGTTGAGTATCTATAA

Upstream 100 bases:

>100_bases
TGCGTAAATCGTGAATTTCCACAATAAACAGGCGGTTATATGGCGTAGTGAACTATGCTAAAGTGTAAACGCAAATCGAT
ACCACTATAAGGATTCTTGG

Downstream 100 bases:

>100_bases
CTGTCTATACATACAGTTTTTGTTGATTTTTAAGGGCCACATCCGCTAATGTGGCCCTTTGTTTGTTGAGCTCGAAAAAT
TTGTTATGACCCGTCTGTTT

Product: nitroreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MDALDLLLNRRSIGKLAAPAPEGKALENIIRAGLRAPDHGALTPWRFVIAQGSGLHKLSDILVKAAQAKGSESVVEKVKN
APFRAPMVITVIAKVTESEKVPAFEQHLSAGCAVQAMQMAAVAQGFQGFWRSGEWMFDTEVRQAFGLQGDDAIVGFLYLG
SAECSAMKVPERDLAKFVEYL

Sequences:

>Translated_181_residues
MDALDLLLNRRSIGKLAAPAPEGKALENIIRAGLRAPDHGALTPWRFVIAQGSGLHKLSDILVKAAQAKGSESVVEKVKN
APFRAPMVITVIAKVTESEKVPAFEQHLSAGCAVQAMQMAAVAQGFQGFWRSGEWMFDTEVRQAFGLQGDDAIVGFLYLG
SAECSAMKVPERDLAKFVEYL
>Mature_181_residues
MDALDLLLNRRSIGKLAAPAPEGKALENIIRAGLRAPDHGALTPWRFVIAQGSGLHKLSDILVKAAQAKGSESVVEKVKN
APFRAPMVITVIAKVTESEKVPAFEQHLSAGCAVQAMQMAAVAQGFQGFWRSGEWMFDTEVRQAFGLQGDDAIVGFLYLG
SAECSAMKVPERDLAKFVEYL

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family [H]

Homologues:

Organism=Escherichia coli, GI1788063, Length=185, Percent_Identity=53.5135135135135, Blast_Score=199, Evalue=8e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: NA

Molecular weight: Translated: 19557; Mature: 19557

Theoretical pI: Translated: 7.51; Mature: 7.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDALDLLLNRRSIGKLAAPAPEGKALENIIRAGLRAPDHGALTPWRFVIAQGSGLHKLSD
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCHHHHHH
ILVKAAQAKGSESVVEKVKNAPFRAPMVITVIAKVTESEKVPAFEQHLSAGCAVQAMQMA
HHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHH
AVAQGFQGFWRSGEWMFDTEVRQAFGLQGDDAIVGFLYLGSAECSAMKVPERDLAKFVEY
HHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
L
C
>Mature Secondary Structure
MDALDLLLNRRSIGKLAAPAPEGKALENIIRAGLRAPDHGALTPWRFVIAQGSGLHKLSD
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHEEECCCCHHHHHH
ILVKAAQAKGSESVVEKVKNAPFRAPMVITVIAKVTESEKVPAFEQHLSAGCAVQAMQMA
HHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHH
AVAQGFQGFWRSGEWMFDTEVRQAFGLQGDDAIVGFLYLGSAECSAMKVPERDLAKFVEY
HHHHHHHHHHCCCCEEEHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHH
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]