| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is hemK [H]
Identifier: 37679116
GI number: 37679116
Start: 932448
End: 933323
Strand: Direct
Name: hemK [H]
Synonym: VV0932
Alternate gene names: 37679116
Gene position: 932448-933323 (Clockwise)
Preceding gene: 37679115
Following gene: 37679117
Centisome position: 27.8
GC content: 49.2
Gene sequence:
>876_bases ATGTCTGAGTTGATGACACTAGATGCCGCTGTTAAACAGGCGGCATCTCGCTTTTCTGAGTTAGGCAATGATTCGCCGTC TTTAGACGCCGCGGTATTGCTTTGCCATGTACTGGATAAGCCGCGTAGCTATCTGTTTACCTGGCCAGATAAAATACTCA CCGAACAAGAGCAGCAGCAGTTTGAAGCCTTAGTGGCGCGTCGACTGTCTGGCGAACCGGTGGCTTACATCATCGGTGAA CGAGAGTTTTGGTCTTTGCCTTTTAAAGTCGCGCCATCGACGTTAATTCCTCGCCCCGATACCGAGCGTTTAGTGGAGTT GGCGCTAGAAAAAACTGCGACGCAAACGGGCTCTATCCTCGACTTAGGCACAGGCACGGGAGCGATTGCCATTGCACTGG CGTCTGAACTGCCACATCGCACTGTGATGGGCGTGGATTTGCAGCAGGAAGCGAAGCTGCTTGCTGAGTCGAATGCGTTG GCATTGAATATCAAAAATGTGACCTTTAAACAGGGCAGCTGGTTTGAACCTGTGGTTCAAGGCACAAAGTTTGCTTTAAT CGTTTCCAATCCTCCTTATATTGATGAGAATGATCCCCATCTTAATCAAGGAGATGTGCGATTTGAGCCGAAAAGTGCTC TGGTTGCCGAAGAGTCTGGCCTGGCTGATATCCGTTATATCGCGCAACAGGCACGTGACTATCTTGAGCCTCATGGCTGG CTGATGTTTGAACATGGCTACGACCAAGGTATCGCTGTTCGAGAAATCCTAGATACGTTGGGATATCAAGAGGTAGCAAC CGAAAAGGATTACGGTGGCAATGATCGAGTGACTTTGGGTTACTTCGTTGCTTTACCAGAAAACACGGATCACTAG
Upstream 100 bases:
>100_bases TCTGAAGTGATGGAAGGCGATCTTCAGTCTTTGATCGATCCTGTGATTCAGGAACACCAAGCGGACCAATTGGCTGCTTT GGCGGAAAACAACTGATCCC
Downstream 100 bases:
>100_bases ATCCAGATATCAAAGAGAACACTATGTACGAAGCTCTGAAATACTTTCATTTACTCACCATTGTCATCAGCGCGTTGCTG CTTTCCGTTCGCTATGCATT
Product: methylase of polypeptide chain release factor
Products: NA
Alternate protein names: M.VchAHemK2P [H]
Number of amino acids: Translated: 291; Mature: 290
Protein sequence:
>291_residues MSELMTLDAAVKQAASRFSELGNDSPSLDAAVLLCHVLDKPRSYLFTWPDKILTEQEQQQFEALVARRLSGEPVAYIIGE REFWSLPFKVAPSTLIPRPDTERLVELALEKTATQTGSILDLGTGTGAIAIALASELPHRTVMGVDLQQEAKLLAESNAL ALNIKNVTFKQGSWFEPVVQGTKFALIVSNPPYIDENDPHLNQGDVRFEPKSALVAEESGLADIRYIAQQARDYLEPHGW LMFEHGYDQGIAVREILDTLGYQEVATEKDYGGNDRVTLGYFVALPENTDH
Sequences:
>Translated_291_residues MSELMTLDAAVKQAASRFSELGNDSPSLDAAVLLCHVLDKPRSYLFTWPDKILTEQEQQQFEALVARRLSGEPVAYIIGE REFWSLPFKVAPSTLIPRPDTERLVELALEKTATQTGSILDLGTGTGAIAIALASELPHRTVMGVDLQQEAKLLAESNAL ALNIKNVTFKQGSWFEPVVQGTKFALIVSNPPYIDENDPHLNQGDVRFEPKSALVAEESGLADIRYIAQQARDYLEPHGW LMFEHGYDQGIAVREILDTLGYQEVATEKDYGGNDRVTLGYFVALPENTDH >Mature_290_residues SELMTLDAAVKQAASRFSELGNDSPSLDAAVLLCHVLDKPRSYLFTWPDKILTEQEQQQFEALVARRLSGEPVAYIIGER EFWSLPFKVAPSTLIPRPDTERLVELALEKTATQTGSILDLGTGTGAIAIALASELPHRTVMGVDLQQEAKLLAESNALA LNIKNVTFKQGSWFEPVVQGTKFALIVSNPPYIDENDPHLNQGDVRFEPKSALVAEESGLADIRYIAQQARDYLEPHGWL MFEHGYDQGIAVREILDTLGYQEVATEKDYGGNDRVTLGYFVALPENTDH
Specific function: Probable protein methyltransferase. May methylate a Gln residue in target proteins [H]
COG id: COG2890
COG function: function code J; Methylase of polypeptide chain release factors
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the hemK family [H]
Homologues:
Organism=Homo sapiens, GI7705409, Length=266, Percent_Identity=33.0827067669173, Blast_Score=92, Evalue=6e-19, Organism=Escherichia coli, GI1787463, Length=261, Percent_Identity=53.2567049808429, Blast_Score=276, Evalue=1e-75, Organism=Escherichia coli, GI87082085, Length=255, Percent_Identity=31.3725490196078, Blast_Score=91, Evalue=8e-20, Organism=Drosophila melanogaster, GI24582226, Length=258, Percent_Identity=27.5193798449612, Blast_Score=100, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002052 - InterPro: IPR004556 - InterPro: IPR019874 - InterPro: IPR007848 [H]
Pfam domain/function: PF05175 MTS [H]
EC number: 2.1.1.-
Molecular weight: Translated: 32230; Mature: 32098
Theoretical pI: Translated: 4.39; Mature: 4.39
Prosite motif: PS00092 N6_MTASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELMTLDAAVKQAASRFSELGNDSPSLDAAVLLCHVLDKPRSYLFTWPDKILTEQEQQQ CCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHCHHHHHH FEALVARRLSGEPVAYIIGEREFWSLPFKVAPSTLIPRPDTERLVELALEKTATQTGSIL HHHHHHHHCCCCCEEEEECCCHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEE DLGTGTGAIAIALASELPHRTVMGVDLQQEAKLLAESNALALNIKNVTFKQGSWFEPVVQ EECCCCCCEEEEEHHHCCCCEEECCCHHHHHHHHHCCCEEEEEEECEEECCCCCCHHHHC GTKFALIVSNPPYIDENDPHLNQGDVRFEPKSALVAEESGLADIRYIAQQARDYLEPHGW CCEEEEEECCCCCCCCCCCCCCCCCEEECCCHHEEECCCCCHHHHHHHHHHHHHHCCCCE LMFEHGYDQGIAVREILDTLGYQEVATEKDYGGNDRVTLGYFVALPENTDH EEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCEEEEEEEEEECCCCCC >Mature Secondary Structure SELMTLDAAVKQAASRFSELGNDSPSLDAAVLLCHVLDKPRSYLFTWPDKILTEQEQQQ CCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCEEEECCHHHHCHHHHHH FEALVARRLSGEPVAYIIGEREFWSLPFKVAPSTLIPRPDTERLVELALEKTATQTGSIL HHHHHHHHCCCCCEEEEECCCHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHHCCCCCEE DLGTGTGAIAIALASELPHRTVMGVDLQQEAKLLAESNALALNIKNVTFKQGSWFEPVVQ EECCCCCCEEEEEHHHCCCCEEECCCHHHHHHHHHCCCEEEEEEECEEECCCCCCHHHHC GTKFALIVSNPPYIDENDPHLNQGDVRFEPKSALVAEESGLADIRYIAQQARDYLEPHGW CCEEEEEECCCCCCCCCCCCCCCCCEEECCCHHEEECCCCCHHHHHHHHHHHHHHCCCCE LMFEHGYDQGIAVREILDTLGYQEVATEKDYGGNDRVTLGYFVALPENTDH EEEECCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCEEEEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]