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The map label for this gene is ygdD [C]

Identifier: 37679064

GI number: 37679064

Start: 881168

End: 881566

Strand: Direct

Name: ygdD [C]

Synonym: VV0880

Alternate gene names: 37679064

Gene position: 881168-881566 (Clockwise)

Preceding gene: 37679063

Following gene: 229047215

Centisome position: 26.27

GC content: 47.62

Gene sequence:

>399_bases
ATGAAAAGTAAGTGGCTGCTCACTTTTGTTGGTTTCTCAGGCGCATCGGCGGTTGCACTTGGCGCGTTTGCTGCTCACGG
ACTCAAAAGTCAATTGTCGCCGTATTTGTTAGGTGTGTTTGAGACGGGCGTGATGTACCAGTTTTGGCATACCCTCGCCA
TCGCCCTGTGCGCCGTTCTGCTGTCTTTGCCGACTGGAGAGAAAGCGCAAAAATATTTTTTCCGCGCGGCAATTTGTTTT
ATCATCGGCATCTTTTGCTTTAGCGGCAGCTTATACGCCCTCGCATTAACTGGCATAAAATGGTTTGGCCCCATAACTCC
TATGGGAGGCTTGCTGTTTATTATTGGTTGGATAATGTTGATGTTGGCAGCTTTAAAAACGAACGAGGTATCTCAGTGA

Upstream 100 bases:

>100_bases
GATCATAGTTTTAAACCGAGAAAAAGTTCTGGCCATACAGAAGCAGGCAATGTGCAGTTGGCGATTGAGCAGCTGTGCGC
TTTTATAAAAGGGGGGGACG

Downstream 100 bases:

>100_bases
AACAATTAATGCTCTATTGTCGTCAGGGCTTTGAAAAAGAGTGTGCTGGTGAAATTCAGGACAAAGCGACTCAGTTAGAG
GTTTATGGTTTTCCACGTGT

Product: uncharacterized small membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MKSKWLLTFVGFSGASAVALGAFAAHGLKSQLSPYLLGVFETGVMYQFWHTLAIALCAVLLSLPTGEKAQKYFFRAAICF
IIGIFCFSGSLYALALTGIKWFGPITPMGGLLFIIGWIMLMLAALKTNEVSQ

Sequences:

>Translated_132_residues
MKSKWLLTFVGFSGASAVALGAFAAHGLKSQLSPYLLGVFETGVMYQFWHTLAIALCAVLLSLPTGEKAQKYFFRAAICF
IIGIFCFSGSLYALALTGIKWFGPITPMGGLLFIIGWIMLMLAALKTNEVSQ
>Mature_132_residues
MKSKWLLTFVGFSGASAVALGAFAAHGLKSQLSPYLLGVFETGVMYQFWHTLAIALCAVLLSLPTGEKAQKYFFRAAICF
IIGIFCFSGSLYALALTGIKWFGPITPMGGLLFIIGWIMLMLAALKTNEVSQ

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=129, Percent_Identity=35.6589147286822, Blast_Score=79, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 14294; Mature: 14294

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSKWLLTFVGFSGASAVALGAFAAHGLKSQLSPYLLGVFETGVMYQFWHTLAIALCAVL
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLPTGEKAQKYFFRAAICFIIGIFCFSGSLYALALTGIKWFGPITPMGGLLFIIGWIML
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MLAALKTNEVSQ
HHHHHHHCCCCC
>Mature Secondary Structure
MKSKWLLTFVGFSGASAVALGAFAAHGLKSQLSPYLLGVFETGVMYQFWHTLAIALCAVL
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSLPTGEKAQKYFFRAAICFIIGIFCFSGSLYALALTGIKWFGPITPMGGLLFIIGWIML
HHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
MLAALKTNEVSQ
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA