| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
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The map label for this gene is yagK [H]
Identifier: 37678985
GI number: 37678985
Start: 806984
End: 807628
Strand: Direct
Name: yagK [H]
Synonym: VV0801
Alternate gene names: 37678985
Gene position: 806984-807628 (Clockwise)
Preceding gene: 37678984
Following gene: 161486651
Centisome position: 24.06
GC content: 39.38
Gene sequence:
>645_bases ATGAGCTTCAGAACCAAAAAACTCAAAACGACGACAAGTGATACATTTAACGGATTACCAATCCTGACACATAAAGGCGA TTTAGTTCTTAACTATCTCGATAGATTGTACGACACGATTGATAAAGCCGTTACACAATACCCTCGAACGACAGCGATTA GAGTCGACTTACATTTATCGAACCTACAACCAGATGGCTCTAGTGTCATAAAGAACTTTATTGCTTCGTTGGACGCTCAG ATTCAAGCAGATCTCAGCCGGAAAAAAAGACGAGGTCAGACGGTGCGTAGTTGTAAGGTACGATATGTTTGGTGCAAGGA AAAAGGGACATTATTGAATCGTCACCATTATCATCTCGTTTTGTTGTTGAACAAAGACGTATACCACTCCCTTGGACGGT ATGAACAAAAAGGTAACTTATCAGACATGATAAAAAAAGCTTGGTGTCGAACATTGGGTATTTATGCCGATGAAGGTGAT ACCTTAGTTCACTTTCCTGACAACCCAACCTATTGGTTAGATTTTAATTCAGATAAATTTGACCAACAAATAAATGAACT ATTTAAACGGGTCAGCTACTTAGCTAAAGTCGAGACCAAGTGTTCTGAGGATAGGTACCGAAGTTTTGGGTGTTCTCGAA CTTAA
Upstream 100 bases:
>100_bases ACCACAACACATCATCACACATTAGGTAGACGTTACACACCTTAAAAATTAACTACACCTAACCATCCTATACCAGACAC ATTGACTAACAGGTATAGCG
Downstream 100 bases:
>100_bases ATAAGAGGGGGGCGATCCCCTCTCTATTCGTTATGATTAGTTAGCAGGCACTATGGGCAGTTCTTCACACATACCCATAT GAGCCACATCCACTAGAGTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MSFRTKKLKTTTSDTFNGLPILTHKGDLVLNYLDRLYDTIDKAVTQYPRTTAIRVDLHLSNLQPDGSSVIKNFIASLDAQ IQADLSRKKRRGQTVRSCKVRYVWCKEKGTLLNRHHYHLVLLLNKDVYHSLGRYEQKGNLSDMIKKAWCRTLGIYADEGD TLVHFPDNPTYWLDFNSDKFDQQINELFKRVSYLAKVETKCSEDRYRSFGCSRT
Sequences:
>Translated_214_residues MSFRTKKLKTTTSDTFNGLPILTHKGDLVLNYLDRLYDTIDKAVTQYPRTTAIRVDLHLSNLQPDGSSVIKNFIASLDAQ IQADLSRKKRRGQTVRSCKVRYVWCKEKGTLLNRHHYHLVLLLNKDVYHSLGRYEQKGNLSDMIKKAWCRTLGIYADEGD TLVHFPDNPTYWLDFNSDKFDQQINELFKRVSYLAKVETKCSEDRYRSFGCSRT >Mature_213_residues SFRTKKLKTTTSDTFNGLPILTHKGDLVLNYLDRLYDTIDKAVTQYPRTTAIRVDLHLSNLQPDGSSVIKNFIASLDAQI QADLSRKKRRGQTVRSCKVRYVWCKEKGTLLNRHHYHLVLLLNKDVYHSLGRYEQKGNLSDMIKKAWCRTLGIYADEGDT LVHFPDNPTYWLDFNSDKFDQQINELFKRVSYLAKVETKCSEDRYRSFGCSRT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfjJ [H]
Homologues:
Organism=Escherichia coli, GI1786473, Length=201, Percent_Identity=37.8109452736318, Blast_Score=126, Evalue=8e-31, Organism=Escherichia coli, GI1788979, Length=201, Percent_Identity=36.318407960199, Blast_Score=110, Evalue=5e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR021723 [H]
Pfam domain/function: PF11726 DUF3296 [H]
EC number: NA
Molecular weight: Translated: 24921; Mature: 24790
Theoretical pI: Translated: 9.79; Mature: 9.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSFRTKKLKTTTSDTFNGLPILTHKGDLVLNYLDRLYDTIDKAVTQYPRTTAIRVDLHLS CCCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC NLQPDGSSVIKNFIASLDAQIQADLSRKKRRGQTVRSCKVRYVWCKEKGTLLNRHHYHLV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEEEECCCCCEECCCCEEEE LLLNKDVYHSLGRYEQKGNLSDMIKKAWCRTLGIYADEGDTLVHFPDNPTYWLDFNSDKF EEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEECCCCEEEECCCCCEEEEECCCCHH DQQINELFKRVSYLAKVETKCSEDRYRSFGCSRT HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure SFRTKKLKTTTSDTFNGLPILTHKGDLVLNYLDRLYDTIDKAVTQYPRTTAIRVDLHLS CCCCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEC NLQPDGSSVIKNFIASLDAQIQADLSRKKRRGQTVRSCKVRYVWCKEKGTLLNRHHYHLV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCEEEEEEECCCCCEECCCCEEEE LLLNKDVYHSLGRYEQKGNLSDMIKKAWCRTLGIYADEGDTLVHFPDNPTYWLDFNSDKF EEECCHHHHHHHHHCCCCCHHHHHHHHHHHHHCEEECCCCEEEECCCCCEEEEECCCCHH DQQINELFKRVSYLAKVETKCSEDRYRSFGCSRT HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]