| Definition | Vibrio vulnificus YJ016 chromosome I, complete sequence. |
|---|---|
| Accession | NC_005139 |
| Length | 3,354,505 |
Click here to switch to the map view.
The map label for this gene is tgt
Identifier: 37678930
GI number: 37678930
Start: 752770
End: 754071
Strand: Direct
Name: tgt
Synonym: VV0746
Alternate gene names: 37678930
Gene position: 752770-754071 (Clockwise)
Preceding gene: 37678929
Following gene: 37678931
Centisome position: 22.44
GC content: 47.24
Gene sequence:
>1302_bases GTGGTGCAGATCGGGATAATCTTGGCTGCATGCAAAACGAGTGCTAGCAGCAGGCTAGAGGGATGGATTCACTCCATTTT TTCGCAAGGAAAACGCGACCGCTCTGGTGGGACGGAAACGTCCGTGACAATACCGTCAGACTGTTTCTCTGACGTTGGAG GCTTCGTGAAATTAAAATTTGATCTTAAAAAGAAAAATGGCAATGCCCGTCGTGGTCAATTGACATTTGAACGTGGAACT GTGCAAACCCCGGCGTTTATGCCTGTAGGTACTTACGGTACCGTCAAAGGTATGACACCAGAAGAAGTAAAAGAGACGGG TGCAGAAATTCTACTAGGCAACACATTCCACTTATGGCTACGTCCTGGCCAAGAAGTGATGAAAATGCACGGCGATCTGC ACGATTTCATGAACTGGCAAGGTCCTATCTTGACTGACTCAGGCGGTTTCCAAGTATTCAGCCTTGGTGATATTCGTAAA ATTACCGAAGAAGGCGTGCATTTCCGCAACCCAGTAAACGGTGACAAGATTTTCATGGATGCTGAGAAATCGATGGAAAT TCAAAAAGACCTCGGTTCTGACATCGTAATGATTTTCGATGAGTGTACGCCTTACCCTGCGACTCACGCTGAAGCGAAAA AGTCGATGGAAATGTCTCTGCGTTGGGCACAACGCTCGCGTGACCATTTCGATAAGCTCGAAAACCCGAACAACCTGTTT GGTATTGTTCAAGGCGGTGTCTACGAAGATCTTCGTGATGTCTCAGTTAAAGGCCTAACAGAGATTGGTTTTGATGGCTA TGCGGTCGGTGGTCTTGCGGTTGGCGAACCTAAAGAAGACATGCATCGCGTACTTGAGCACACCTGTCCTCAGTTACCAG AAGATAAACCGCGTTACCTGATGGGCGTGGGCAAACCAGAAGACTTGGTTGAAGGGGTTCGTCGCGGTATCGATATGTTT GACTGTGTAATGCCAACGCGAAATGCGCGTAATGGACACCTATTTGTGACTGGTGGTGTGATCAAGATCCGTAATGCGAC ACATAAAACGGATACAACCCCTCTCGATCCGCACTGTGACTGTTACACTTGCAAAAATTACTCTAAGTCGTATCTGCACC ACTTGGACCGTTGTAATGAAATCCTTGGTGCTCGCTTAAACACTATCCATAACCTGCGTTATTACCAACGTCTCATGGAA AGCATTCGTAAAGCGATTGATGAAGATCGCTTCGAGCAGTTTGTGGAAGAGTTCTACGCTCGACGCAATCGCGAAGTGCC ACCACTCGGTAAACAGGCATAA
Upstream 100 bases:
>100_bases CTTTTTCTCTTACGGGGATGCGATGTTCATTGAGAAGAAAACGCAATAAGCAATAAAAAGCGCAACAAATGTTATCTAAA GTGAAGTAAGTTTCATTTTA
Downstream 100 bases:
>100_bases GTTCGCAATAGTAAAAAAGTGTTACGCCATCTTGTTTTTGTGAGTGAACTCGCTTGAAAATGAGGTGGCGTTACCCAATT TATTGGATTATTAATAAAAA
Product: queuine tRNA-ribosyltransferase
Products: NA
Alternate protein names: Guanine insertion enzyme; tRNA-guanine transglycosylase [H]
Number of amino acids: Translated: 433; Mature: 433
Protein sequence:
>433_residues MVQIGIILAACKTSASSRLEGWIHSIFSQGKRDRSGGTETSVTIPSDCFSDVGGFVKLKFDLKKKNGNARRGQLTFERGT VQTPAFMPVGTYGTVKGMTPEEVKETGAEILLGNTFHLWLRPGQEVMKMHGDLHDFMNWQGPILTDSGGFQVFSLGDIRK ITEEGVHFRNPVNGDKIFMDAEKSMEIQKDLGSDIVMIFDECTPYPATHAEAKKSMEMSLRWAQRSRDHFDKLENPNNLF GIVQGGVYEDLRDVSVKGLTEIGFDGYAVGGLAVGEPKEDMHRVLEHTCPQLPEDKPRYLMGVGKPEDLVEGVRRGIDMF DCVMPTRNARNGHLFVTGGVIKIRNATHKTDTTPLDPHCDCYTCKNYSKSYLHHLDRCNEILGARLNTIHNLRYYQRLME SIRKAIDEDRFEQFVEEFYARRNREVPPLGKQA
Sequences:
>Translated_433_residues MVQIGIILAACKTSASSRLEGWIHSIFSQGKRDRSGGTETSVTIPSDCFSDVGGFVKLKFDLKKKNGNARRGQLTFERGT VQTPAFMPVGTYGTVKGMTPEEVKETGAEILLGNTFHLWLRPGQEVMKMHGDLHDFMNWQGPILTDSGGFQVFSLGDIRK ITEEGVHFRNPVNGDKIFMDAEKSMEIQKDLGSDIVMIFDECTPYPATHAEAKKSMEMSLRWAQRSRDHFDKLENPNNLF GIVQGGVYEDLRDVSVKGLTEIGFDGYAVGGLAVGEPKEDMHRVLEHTCPQLPEDKPRYLMGVGKPEDLVEGVRRGIDMF DCVMPTRNARNGHLFVTGGVIKIRNATHKTDTTPLDPHCDCYTCKNYSKSYLHHLDRCNEILGARLNTIHNLRYYQRLME SIRKAIDEDRFEQFVEEFYARRNREVPPLGKQA >Mature_433_residues MVQIGIILAACKTSASSRLEGWIHSIFSQGKRDRSGGTETSVTIPSDCFSDVGGFVKLKFDLKKKNGNARRGQLTFERGT VQTPAFMPVGTYGTVKGMTPEEVKETGAEILLGNTFHLWLRPGQEVMKMHGDLHDFMNWQGPILTDSGGFQVFSLGDIRK ITEEGVHFRNPVNGDKIFMDAEKSMEIQKDLGSDIVMIFDECTPYPATHAEAKKSMEMSLRWAQRSRDHFDKLENPNNLF GIVQGGVYEDLRDVSVKGLTEIGFDGYAVGGLAVGEPKEDMHRVLEHTCPQLPEDKPRYLMGVGKPEDLVEGVRRGIDMF DCVMPTRNARNGHLFVTGGVIKIRNATHKTDTTPLDPHCDCYTCKNYSKSYLHHLDRCNEILGARLNTIHNLRYYQRLME SIRKAIDEDRFEQFVEEFYARRNREVPPLGKQA
Specific function: Exchanges the guanine residue with 7-aminomethyl-7- deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). After this exchange, a cyclopentendiol moiety is attached to the 7-aminomethyl group of 7-deazaguanine, resulting in the hyper
COG id: COG0343
COG function: function code J; Queuine/archaeosine tRNA-ribosyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the queuine tRNA-ribosyltransferase family [H]
Homologues:
Organism=Homo sapiens, GI13654276, Length=350, Percent_Identity=44, Blast_Score=311, Evalue=7e-85, Organism=Escherichia coli, GI1786607, Length=372, Percent_Identity=80.6451612903226, Blast_Score=652, Evalue=0.0, Organism=Caenorhabditis elegans, GI17544680, Length=362, Percent_Identity=41.7127071823204, Blast_Score=290, Evalue=1e-78, Organism=Caenorhabditis elegans, GI25146502, Length=163, Percent_Identity=33.7423312883436, Blast_Score=88, Evalue=9e-18, Organism=Drosophila melanogaster, GI19920510, Length=361, Percent_Identity=45.983379501385, Blast_Score=322, Evalue=2e-88, Organism=Drosophila melanogaster, GI21355311, Length=257, Percent_Identity=28.7937743190661, Blast_Score=104, Evalue=2e-22,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004803 - InterPro: IPR002616 [H]
Pfam domain/function: PF01702 TGT [H]
EC number: =2.4.2.29 [H]
Molecular weight: Translated: 48856; Mature: 48856
Theoretical pI: Translated: 6.91; Mature: 6.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVQIGIILAACKTSASSRLEGWIHSIFSQGKRDRSGGTETSVTIPSDCFSDVGGFVKLKF CEEEEEEEEEHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHCCCCEEEEEE DLKKKNGNARRGQLTFERGTVQTPAFMPVGTYGTVKGMTPEEVKETGAEILLGNTFHLWL EEEECCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHCCCEEEECCEEEEEE RPGQEVMKMHGDLHDFMNWQGPILTDSGGFQVFSLGDIRKITEEGVHFRNPVNGDKIFMD CCCHHHHHHHCCHHHHHCCCCCEEECCCCEEEEECCHHHHHHHCCCCCCCCCCCCEEEEE AEKSMEIQKDLGSDIVMIFDECTPYPATHAEAKKSMEMSLRWAQRSRDHFDKLENPNNLF CHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE GIVQGGVYEDLRDVSVKGLTEIGFDGYAVGGLAVGEPKEDMHRVLEHTCPQLPEDKPRYL EEECCCHHHHHHHCCCCCHHHCCCCCEEECCEECCCCHHHHHHHHHHHCCCCCCCCCCEE MGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTGGVIKIRNATHKTDTTPLDPHCD EECCCHHHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCC CYTCKNYSKSYLHHLDRCNEILGARLNTIHNLRYYQRLMESIRKAIDEDRFEQFVEEFYA CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH RRNREVPPLGKQA HCCCCCCCCCCCC >Mature Secondary Structure MVQIGIILAACKTSASSRLEGWIHSIFSQGKRDRSGGTETSVTIPSDCFSDVGGFVKLKF CEEEEEEEEEHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCHHHHHCCCCEEEEEE DLKKKNGNARRGQLTFERGTVQTPAFMPVGTYGTVKGMTPEEVKETGAEILLGNTFHLWL EEEECCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHCCCEEEECCEEEEEE RPGQEVMKMHGDLHDFMNWQGPILTDSGGFQVFSLGDIRKITEEGVHFRNPVNGDKIFMD CCCHHHHHHHCCHHHHHCCCCCEEECCCCEEEEECCHHHHHHHCCCCCCCCCCCCEEEEE AEKSMEIQKDLGSDIVMIFDECTPYPATHAEAKKSMEMSLRWAQRSRDHFDKLENPNNLF CHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEE GIVQGGVYEDLRDVSVKGLTEIGFDGYAVGGLAVGEPKEDMHRVLEHTCPQLPEDKPRYL EEECCCHHHHHHHCCCCCHHHCCCCCEEECCEECCCCHHHHHHHHHHHCCCCCCCCCCEE MGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGHLFVTGGVIKIRNATHKTDTTPLDPHCD EECCCHHHHHHHHHHCCHHHHHHCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCC CYTCKNYSKSYLHHLDRCNEILGARLNTIHNLRYYQRLMESIRKAIDEDRFEQFVEEFYA CEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH RRNREVPPLGKQA HCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA