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The map label for this gene is rraA [C]

Identifier: 37678832

GI number: 37678832

Start: 643660

End: 644172

Strand: Direct

Name: rraA [C]

Synonym: VV0648

Alternate gene names: 37678832

Gene position: 643660-644172 (Clockwise)

Preceding gene: 37678831

Following gene: 229047217

Centisome position: 19.19

GC content: 43.27

Gene sequence:

>513_bases
ATGTGGCAAAAATTTTCTCAAGGAGGATATATGAAGGACATTACCCCGGATATCTGTGATCAACATGAAGACAAAGTCAC
TTTACTCAATTTGCCATTACAGAATTTTGGTCAGAAAGCGGCATTCTTCGGAGAGATTGTGACCGTTCGCTGTTATCACG
ATAACTCGAAAGTGCGAGATGTTTTGAGTGAAAATGGTAAAGGTAAAGTGTTGGTTGTGGATGGGCATGGTTCCTGCCAA
AAAGCATTACTTGGCGATCAATTAGCGATATTGGCCATTGAAAATGATTGGGAAGGGGTGATTGTGTTTGGTGCCGTGCG
CGACGTCGCCCAGATGTCACAGATGGAACTGGGGATTAAAGCATTGGGTACGTCACCATTCAAAACGGAAAAACGAGGGG
CCGGTGAAGTCAATGTTACCTTAACCATGCACAACCAAATGGTGCAGCCAAAGGATTACATCTACGCCGATTGGAATGGA
ATTCTTATTTCCAAAGAGTTGCTTCAATTCTAA

Upstream 100 bases:

>100_bases
CTTTTTTTAGTGTCTTGCTTGAGTGATGAAAGGAAAGAATCACTGGGGCCGTTTGACCAGCGCATCAGATAAGAAATTTT
GAATTCGAGCCGCATGTTTG

Downstream 100 bases:

>100_bases
AAGCGGAAACCTAAACCAAACTCAATACCTTGTTGCCACTCTTGCAGGTCGAGAGTGGCATGCAAATCCAGTTGTTCGCT
AATTTTGACTCGGCTTGTCA

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 170

Protein sequence:

>170_residues
MWQKFSQGGYMKDITPDICDQHEDKVTLLNLPLQNFGQKAAFFGEIVTVRCYHDNSKVRDVLSENGKGKVLVVDGHGSCQ
KALLGDQLAILAIENDWEGVIVFGAVRDVAQMSQMELGIKALGTSPFKTEKRGAGEVNVTLTMHNQMVQPKDYIYADWNG
ILISKELLQF

Sequences:

>Translated_170_residues
MWQKFSQGGYMKDITPDICDQHEDKVTLLNLPLQNFGQKAAFFGEIVTVRCYHDNSKVRDVLSENGKGKVLVVDGHGSCQ
KALLGDQLAILAIENDWEGVIVFGAVRDVAQMSQMELGIKALGTSPFKTEKRGAGEVNVTLTMHNQMVQPKDYIYADWNG
ILISKELLQF
>Mature_170_residues
MWQKFSQGGYMKDITPDICDQHEDKVTLLNLPLQNFGQKAAFFGEIVTVRCYHDNSKVRDVLSENGKGKVLVVDGHGSCQ
KALLGDQLAILAIENDWEGVIVFGAVRDVAQMSQMELGIKALGTSPFKTEKRGAGEVNVTLTMHNQMVQPKDYIYADWNG
ILISKELLQF

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=158, Percent_Identity=39.2405063291139, Blast_Score=136, Evalue=6e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 18948; Mature: 18948

Theoretical pI: Translated: 5.64; Mature: 5.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWQKFSQGGYMKDITPDICDQHEDKVTLLNLPLQNFGQKAAFFGEIVTVRCYHDNSKVRD
CCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCHHHCCCHHHEEEEEEEEEEECCCHHHHH
VLSENGKGKVLVVDGHGSCQKALLGDQLAILAIENDWEGVIVFGAVRDVAQMSQMELGIK
HHHCCCCCEEEEEECCCCHHHHHCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHCCHH
ALGTSPFKTEKRGAGEVNVTLTMHNQMVQPKDYIYADWNGILISKELLQF
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCEEEEEHHHHCC
>Mature Secondary Structure
MWQKFSQGGYMKDITPDICDQHEDKVTLLNLPLQNFGQKAAFFGEIVTVRCYHDNSKVRD
CCCCCCCCCCCCCCCHHHHCCCCCCEEEEECCHHHCCCHHHEEEEEEEEEEECCCHHHHH
VLSENGKGKVLVVDGHGSCQKALLGDQLAILAIENDWEGVIVFGAVRDVAQMSQMELGIK
HHHCCCCCEEEEEECCCCHHHHHCCCCEEEEEEECCCCEEEEEECHHHHHHHHHHHCCHH
ALGTSPFKTEKRGAGEVNVTLTMHNQMVQPKDYIYADWNGILISKELLQF
CCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCEEEECCCEEEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA