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The map label for this gene is yhcM [H]

Identifier: 37678777

GI number: 37678777

Start: 578491

End: 579618

Strand: Direct

Name: yhcM [H]

Synonym: VV0593

Alternate gene names: 37678777

Gene position: 578491-579618 (Clockwise)

Preceding gene: 37678773

Following gene: 37678778

Centisome position: 17.25

GC content: 44.86

Gene sequence:

>1128_bases
ATGCCCTGTTTTGGTATGAGAACAATGAGCCCATTAGAAAAATACGAACACGACCTCGCGCACAACGGATTCCAGAAAGA
CGCTGCTCAGTACAATGCGGTGCGAGCACTAGATAGGCTTTTTCATCAATATCTCGATTATTGTGCCCAGCCTCAACCGC
AACAAACGCGTTGGCAAAAATTATTAGGCAAACAGCCGCCAGCCAAATTACCACCTCAAGGACTCTATTTTTGGGGTGGT
GTTGGGCGTGGAAAAACGTATCTCATGGATACTTTTTTTGAGGCTTTGCCAACTCAACGCAAAATGCGCGTCCATTTTCA
TCGCTTTATGTATCGAGTTCACGATGAACTGAAACGGTTAGGTGATGTAGAAAATCCACTGGAAAAAGTGGCTAATGTGT
TTAAGAAAGAGGCGGATATTGTCTGCTTTGATGAGTTTTTTGTTTCGGATATTACCGATGCGATGATTCTCGGCACGCTG
ATGCAGGCGATGTTTAGGCGTCAAATGATACTGGTGGCGACGTCGAACATTGTACCTCAAGAGCTATATCGTAATGGATT
ACAGAGAGCGCGCTTTTTGCCTGCTATCGCTTTGATTGAGCAACACTGTGAAGTGCTCAATGTGGATAGTGGCATTGACT
ATCGTCTACGAACGTTAGAGCAAGCAGAGATCTATCATTATCCATTGGATGAGCAGGCAAATCTCAATCTAAATCTCTAC
TATCAGCAGTTAGTTGGAGAGGGCAAAGCCAAATTACACAGTGTTGACATCAATCATCGCCAAATAGCCGTTATAGAGGC
CAGTGATGGGGTACTGCATGCTACGTTCGCCCAGCTATGCCAAACCGCACGCAGTCAAAATGACTATATTGAACTGTCCA
AAATCTATCACACGGTGTTGTTGGCGGATGTGCCACAAATGGACAATAAGATCGATGATGCCGCGCGGCGATTTATCGCC
CTCGTGGATGAGTTTTACGAGCGACACGTTAAATTGATTATTTCGGCGGAAGTCGCACTAGAACAACTCTATCTGCAAGG
GCAATTGGAGTTTGAGTTTAAGCGTTGTCAATCTCGTTTAGTGGAAATGCAAAGTCATGAGTACTTAGCGAGAGAACATC
TGGCTTAG

Upstream 100 bases:

>100_bases
CTGCTTAGTTACACGTATTGCGCCACCATGTTACTATGGGAGCAGTAGTCAATAAAGCAAAATAGCAACGACACAATCTC
AAGTTTGATAACGGGATTTT

Downstream 100 bases:

>100_bases
ATTGTTTATTGGGAGAAAGACGTGACGAAAAAATTAGTGATTGAGTGCAAAAAAAGGTGATTTTTTCTTCGCTCTTCTCT
ATAATCCTGCGACCCACCGT

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 375; Mature: 374

Protein sequence:

>375_residues
MPCFGMRTMSPLEKYEHDLAHNGFQKDAAQYNAVRALDRLFHQYLDYCAQPQPQQTRWQKLLGKQPPAKLPPQGLYFWGG
VGRGKTYLMDTFFEALPTQRKMRVHFHRFMYRVHDELKRLGDVENPLEKVANVFKKEADIVCFDEFFVSDITDAMILGTL
MQAMFRRQMILVATSNIVPQELYRNGLQRARFLPAIALIEQHCEVLNVDSGIDYRLRTLEQAEIYHYPLDEQANLNLNLY
YQQLVGEGKAKLHSVDINHRQIAVIEASDGVLHATFAQLCQTARSQNDYIELSKIYHTVLLADVPQMDNKIDDAARRFIA
LVDEFYERHVKLIISAEVALEQLYLQGQLEFEFKRCQSRLVEMQSHEYLAREHLA

Sequences:

>Translated_375_residues
MPCFGMRTMSPLEKYEHDLAHNGFQKDAAQYNAVRALDRLFHQYLDYCAQPQPQQTRWQKLLGKQPPAKLPPQGLYFWGG
VGRGKTYLMDTFFEALPTQRKMRVHFHRFMYRVHDELKRLGDVENPLEKVANVFKKEADIVCFDEFFVSDITDAMILGTL
MQAMFRRQMILVATSNIVPQELYRNGLQRARFLPAIALIEQHCEVLNVDSGIDYRLRTLEQAEIYHYPLDEQANLNLNLY
YQQLVGEGKAKLHSVDINHRQIAVIEASDGVLHATFAQLCQTARSQNDYIELSKIYHTVLLADVPQMDNKIDDAARRFIA
LVDEFYERHVKLIISAEVALEQLYLQGQLEFEFKRCQSRLVEMQSHEYLAREHLA
>Mature_374_residues
PCFGMRTMSPLEKYEHDLAHNGFQKDAAQYNAVRALDRLFHQYLDYCAQPQPQQTRWQKLLGKQPPAKLPPQGLYFWGGV
GRGKTYLMDTFFEALPTQRKMRVHFHRFMYRVHDELKRLGDVENPLEKVANVFKKEADIVCFDEFFVSDITDAMILGTLM
QAMFRRQMILVATSNIVPQELYRNGLQRARFLPAIALIEQHCEVLNVDSGIDYRLRTLEQAEIYHYPLDEQANLNLNLYY
QQLVGEGKAKLHSVDINHRQIAVIEASDGVLHATFAQLCQTARSQNDYIELSKIYHTVLLADVPQMDNKIDDAARRFIAL
VDEFYERHVKLIISAEVALEQLYLQGQLEFEFKRCQSRLVEMQSHEYLAREHLA

Specific function: Unknown

COG id: COG1485

COG function: function code R; Predicted ATPase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the AFG1 ATPase family [H]

Homologues:

Organism=Homo sapiens, GI21918872, Length=406, Percent_Identity=32.0197044334975, Blast_Score=214, Evalue=9e-56,
Organism=Escherichia coli, GI1789627, Length=375, Percent_Identity=52.8, Blast_Score=399, Evalue=1e-112,
Organism=Caenorhabditis elegans, GI17505769, Length=351, Percent_Identity=33.048433048433, Blast_Score=212, Evalue=2e-55,
Organism=Saccharomyces cerevisiae, GI6320783, Length=405, Percent_Identity=27.4074074074074, Blast_Score=153, Evalue=5e-38,
Organism=Drosophila melanogaster, GI20129913, Length=429, Percent_Identity=33.1002331002331, Blast_Score=217, Evalue=1e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005654 [H]

Pfam domain/function: PF03969 AFG1_ATPase [H]

EC number: NA

Molecular weight: Translated: 43689; Mature: 43558

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPCFGMRTMSPLEKYEHDLAHNGFQKDAAQYNAVRALDRLFHQYLDYCAQPQPQQTRWQK
CCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LLGKQPPAKLPPQGLYFWGGVGRGKTYLMDTFFEALPTQRKMRVHFHRFMYRVHDELKRL
HHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
GDVENPLEKVANVFKKEADIVCFDEFFVSDITDAMILGTLMQAMFRRQMILVATSNIVPQ
CCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEECCCCHH
ELYRNGLQRARFLPAIALIEQHCEVLNVDSGIDYRLRTLEQAEIYHYPLDEQANLNLNLY
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHEECCCCCCCCCCCEEH
YQQLVGEGKAKLHSVDINHRQIAVIEASDGVLHATFAQLCQTARSQNDYIELSKIYHTVL
HHHHHCCCCHHEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LADVPQMDNKIDDAARRFIALVDEFYERHVKLIISAEVALEQLYLQGQLEFEFKRCQSRL
HHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VEMQSHEYLAREHLA
HHHHHHHHHHHHCCC
>Mature Secondary Structure 
PCFGMRTMSPLEKYEHDLAHNGFQKDAAQYNAVRALDRLFHQYLDYCAQPQPQQTRWQK
CCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
LLGKQPPAKLPPQGLYFWGGVGRGKTYLMDTFFEALPTQRKMRVHFHRFMYRVHDELKRL
HHCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
GDVENPLEKVANVFKKEADIVCFDEFFVSDITDAMILGTLMQAMFRRQMILVATSNIVPQ
CCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEECCCCHH
ELYRNGLQRARFLPAIALIEQHCEVLNVDSGIDYRLRTLEQAEIYHYPLDEQANLNLNLY
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHEECCCCCCCCCCCEEH
YQQLVGEGKAKLHSVDINHRQIAVIEASDGVLHATFAQLCQTARSQNDYIELSKIYHTVL
HHHHHCCCCHHEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LADVPQMDNKIDDAARRFIALVDEFYERHVKLIISAEVALEQLYLQGQLEFEFKRCQSRL
HHCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
VEMQSHEYLAREHLA
HHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]