Click here to switch to the map view.

The map label for this gene is agaD [H]

Identifier: 37678723

GI number: 37678723

Start: 527148

End: 528032

Strand: Direct

Name: agaD [H]

Synonym: VV0539

Alternate gene names: 37678723

Gene position: 527148-528032 (Clockwise)

Preceding gene: 37678722

Following gene: 37678724

Centisome position: 15.71

GC content: 42.82

Gene sequence:

>885_bases
ATGAACTCTAATGCAGAAATGACAATGAACCCTGATCAGTACCATGAAGATGCGGTATCTTCAGTAATCAGCAATACTGA
TAGTTACAGTGATCAGGCAGTAAAGAAAGTAATTACGAAGCAAGACCTGTGGAAAATTGGCTTCCGTGGTCTATTGATGG
AAGGTAACTTTAACTTTAACCGTATGCAGGCGGGTGGTTTCTGTTACTCAATCAGCCCAGCATTGAAAAAGATCCACCAA
AATCCAGAAGACCTTAAGAAGGCGTTAAAGAACAATTTACAGTTCTACAATGCAAACCCTAAGATGTTTACCTTGCCTCT
AGGTCTAGCGATTGCGATGGAAGAGAGCAAAGAAAAACCATCAACAATTGCGTCGGTAAAAGCGGCGACAATGGGTTCAG
TATCGGGTGTGGGTGATGCACTAGACCACTCGGTGATGCTACCGCTAACACTTGCTATTGGTAGTTCGATTGCTTTGCAG
GGCAACCCATTAGGTGTTTTGGTCTTCTTTGTCCTTTACCAAGCATACCGTATTCCAATGTACTTCTGGTTGCTATTCCT
TGGGTACAACGCAGGTGTATCTGCGCTTGAGAAACTGTCTGACCAAGCTGAAAAACTAGGTCGCGCTGCAAACATCGTCG
GTCTTGGCGTTATTGGTTCGATGGTTGCAAAATATGTAAAAGTGTCAACGGTGATTGAGCTTGAAGCGGGCGCTGCTGAT
ATTAGTTTACAAACAGGCATGCTAGATAAATTAATGCCTAACCTACTGCCAATGGCACTTGTATGGTTGATGTACTACCT
AGTGAAAAAAGGTAAATCTCCAACAGCACTTATTTTCGGTATCCTATTTGCTGGTGTAAGTGGTCATTTGGTCGGTATTT
TCTAA

Upstream 100 bases:

>100_bases
GGTACAGCACTTGTGTTTACGTGTGTAGCTATCTTGGATTACATGAACAATAAAAAGTCTGACACTCCTCAAGCAACGAC
TCAAACGCAGGTATTTGACG

Downstream 100 bases:

>100_bases
TAAAGGTTTATTATGATTGGTATTATTGTTTCCGGGCATATTAATTTCGCAACTGGCATGCAATCTGCTGTTGAAGCAAT
TGTTGGTGAGCAAGATTCTT

Product: phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID

Products: NA

Alternate protein names: EIID-Aga; PTS system N-acetylgalactosamine-specific EIID component [H]

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MNSNAEMTMNPDQYHEDAVSSVISNTDSYSDQAVKKVITKQDLWKIGFRGLLMEGNFNFNRMQAGGFCYSISPALKKIHQ
NPEDLKKALKNNLQFYNANPKMFTLPLGLAIAMEESKEKPSTIASVKAATMGSVSGVGDALDHSVMLPLTLAIGSSIALQ
GNPLGVLVFFVLYQAYRIPMYFWLLFLGYNAGVSALEKLSDQAEKLGRAANIVGLGVIGSMVAKYVKVSTVIELEAGAAD
ISLQTGMLDKLMPNLLPMALVWLMYYLVKKGKSPTALIFGILFAGVSGHLVGIF

Sequences:

>Translated_294_residues
MNSNAEMTMNPDQYHEDAVSSVISNTDSYSDQAVKKVITKQDLWKIGFRGLLMEGNFNFNRMQAGGFCYSISPALKKIHQ
NPEDLKKALKNNLQFYNANPKMFTLPLGLAIAMEESKEKPSTIASVKAATMGSVSGVGDALDHSVMLPLTLAIGSSIALQ
GNPLGVLVFFVLYQAYRIPMYFWLLFLGYNAGVSALEKLSDQAEKLGRAANIVGLGVIGSMVAKYVKVSTVIELEAGAAD
ISLQTGMLDKLMPNLLPMALVWLMYYLVKKGKSPTALIFGILFAGVSGHLVGIF
>Mature_294_residues
MNSNAEMTMNPDQYHEDAVSSVISNTDSYSDQAVKKVITKQDLWKIGFRGLLMEGNFNFNRMQAGGFCYSISPALKKIHQ
NPEDLKKALKNNLQFYNANPKMFTLPLGLAIAMEESKEKPSTIASVKAATMGSVSGVGDALDHSVMLPLTLAIGSSIALQ
GNPLGVLVFFVLYQAYRIPMYFWLLFLGYNAGVSALEKLSDQAEKLGRAANIVGLGVIGSMVAKYVKVSTVIELEAGAAD
ISLQTGMLDKLMPNLLPMALVWLMYYLVKKGKSPTALIFGILFAGVSGHLVGIF

Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. This system i

COG id: COG3716

COG function: function code G; Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PTS EIID domain [H]

Homologues:

Organism=Escherichia coli, GI1789529, Length=248, Percent_Identity=38.3064516129032, Blast_Score=186, Evalue=2e-48,
Organism=Escherichia coli, GI1788122, Length=276, Percent_Identity=30.4347826086957, Blast_Score=153, Evalue=1e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004704
- InterPro:   IPR018405 [H]

Pfam domain/function: PF03613 EIID-AGA [H]

EC number: NA

Molecular weight: Translated: 31902; Mature: 31902

Theoretical pI: Translated: 9.11; Mature: 9.11

Prosite motif: PS51108 PTS_EIID

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSNAEMTMNPDQYHEDAVSSVISNTDSYSDQAVKKVITKQDLWKIGFRGLLMEGNFNFN
CCCCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
RMQAGGFCYSISPALKKIHQNPEDLKKALKNNLQFYNANPKMFTLPLGLAIAMEESKEKP
EEECCCEEEECCHHHHHHHCCHHHHHHHHHCCCEEEECCCCEEEECCCEEEEEHHCCCCC
STIASVKAATMGSVSGVGDALDHSVMLPLTLAIGSSIALQGNPLGVLVFFVLYQAYRIPM
HHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
YFWLLFLGYNAGVSALEKLSDQAEKLGRAANIVGLGVIGSMVAKYVKVSTVIELEAGAAD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
ISLQTGMLDKLMPNLLPMALVWLMYYLVKKGKSPTALIFGILFAGVSGHLVGIF
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEC
>Mature Secondary Structure
MNSNAEMTMNPDQYHEDAVSSVISNTDSYSDQAVKKVITKQDLWKIGFRGLLMEGNFNFN
CCCCCCEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC
RMQAGGFCYSISPALKKIHQNPEDLKKALKNNLQFYNANPKMFTLPLGLAIAMEESKEKP
EEECCCEEEECCHHHHHHHCCHHHHHHHHHCCCEEEECCCCEEEECCCEEEEEHHCCCCC
STIASVKAATMGSVSGVGDALDHSVMLPLTLAIGSSIALQGNPLGVLVFFVLYQAYRIPM
HHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHH
YFWLLFLGYNAGVSALEKLSDQAEKLGRAANIVGLGVIGSMVAKYVKVSTVIELEAGAAD
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
ISLQTGMLDKLMPNLLPMALVWLMYYLVKKGKSPTALIFGILFAGVSGHLVGIF
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10931310; 9278503; 8932697 [H]